data_6MVG # _model_server_result.job_id yIqOE6Qs6SEkwKJyEj2HwA _model_server_result.datetime_utc '2024-10-19 11:30:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mvg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":801}' # _entry.id 6MVG # _exptl.entry_id 6MVG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.49 _cell.angle_gamma 90 _cell.entry_id 6MVG _cell.length_a 236.028 _cell.length_b 127.078 _cell.length_c 88.819 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MVG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J 1 1 B,F,G,K 2 1 C,H,I,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 64 A ASP 41 1_555 E CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc2 A OD1 ASP 67 A ASP 44 1_555 E CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc3 A O GLY 68 A GLY 45 1_555 E CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc4 A OD1 ASP 71 A ASP 48 1_555 E CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc5 A OD1 ASP 544 A ASP 521 1_555 E CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc6 A OD2 ASP 544 A ASP 521 1_555 E CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? metalc ? metalc7 B O ASP 64 B ASP 41 1_555 G CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc8 B OD1 ASP 67 B ASP 44 1_555 G CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc9 B O GLY 68 B GLY 45 1_555 G CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc10 B OD1 ASP 71 B ASP 48 1_555 G CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc11 B OD1 ASP 544 B ASP 521 1_555 G CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc12 B OD2 ASP 544 B ASP 521 1_555 G CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc13 C O ASP 64 C ASP 41 1_555 I CA CA . C CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc14 C OD1 ASP 67 C ASP 44 1_555 I CA CA . C CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc15 C O GLY 68 C GLY 45 1_555 I CA CA . C CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc16 C OD1 ASP 71 C ASP 48 1_555 I CA CA . C CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc17 C OD1 ASP 544 C ASP 521 1_555 I CA CA . C CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc18 C OD2 ASP 544 C ASP 521 1_555 I CA CA . C CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 6MVG _atom_sites.fract_transf_matrix[1][1] 0.004237 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000632 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007869 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011384 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FMN A 1 801 4 FMN FMN . E 3 CA A 1 802 1 CA CA . F 2 FMN B 1 801 5 FMN FMN . G 3 CA B 1 802 3 CA CA . H 2 FMN C 1 801 6 FMN FMN . I 3 CA C 1 802 2 CA CA . J 4 HOH A 1 901 81 HOH HOH . J 4 HOH A 2 902 101 HOH HOH . J 4 HOH A 3 903 9 HOH HOH . J 4 HOH A 4 904 70 HOH HOH . J 4 HOH A 5 905 68 HOH HOH . J 4 HOH A 6 906 25 HOH HOH . J 4 HOH A 7 907 92 HOH HOH . J 4 HOH A 8 908 108 HOH HOH . J 4 HOH A 9 909 66 HOH HOH . J 4 HOH A 10 910 47 HOH HOH . J 4 HOH A 11 911 94 HOH HOH . J 4 HOH A 12 912 35 HOH HOH . J 4 HOH A 13 913 61 HOH HOH . J 4 HOH A 14 914 89 HOH HOH . J 4 HOH A 15 915 45 HOH HOH . J 4 HOH A 16 916 58 HOH HOH . J 4 HOH A 17 917 22 HOH HOH . J 4 HOH A 18 918 20 HOH HOH . J 4 HOH A 19 919 10 HOH HOH . J 4 HOH A 20 920 46 HOH HOH . J 4 HOH A 21 921 19 HOH HOH . J 4 HOH A 22 922 60 HOH HOH . J 4 HOH A 23 923 6 HOH HOH . J 4 HOH A 24 924 27 HOH HOH . J 4 HOH A 25 925 37 HOH HOH . J 4 HOH A 26 926 31 HOH HOH . J 4 HOH A 27 927 11 HOH HOH . K 4 HOH B 1 901 4 HOH HOH . K 4 HOH B 2 902 93 HOH HOH . K 4 HOH B 3 903 12 HOH HOH . K 4 HOH B 4 904 59 HOH HOH . K 4 HOH B 5 905 71 HOH HOH . K 4 HOH B 6 906 43 HOH HOH . K 4 HOH B 7 907 78 HOH HOH . K 4 HOH B 8 908 14 HOH HOH . K 4 HOH B 9 909 99 HOH HOH . K 4 HOH B 10 910 72 HOH HOH . K 4 HOH B 11 911 98 HOH HOH . K 4 HOH B 12 912 112 HOH HOH . K 4 HOH B 13 913 1 HOH HOH . K 4 HOH B 14 914 16 HOH HOH . K 4 HOH B 15 915 62 HOH HOH . K 4 HOH B 16 916 26 HOH HOH . K 4 HOH B 17 917 114 HOH HOH . K 4 HOH B 18 918 2 HOH HOH . K 4 HOH B 19 919 115 HOH HOH . K 4 HOH B 20 920 18 HOH HOH . K 4 HOH B 21 921 107 HOH HOH . K 4 HOH B 22 922 30 HOH HOH . K 4 HOH B 23 923 82 HOH HOH . K 4 HOH B 24 924 21 HOH HOH . K 4 HOH B 25 925 109 HOH HOH . K 4 HOH B 26 926 116 HOH HOH . K 4 HOH B 27 927 67 HOH HOH . K 4 HOH B 28 928 44 HOH HOH . K 4 HOH B 29 929 117 HOH HOH . K 4 HOH B 30 930 51 HOH HOH . K 4 HOH B 31 931 103 HOH HOH . K 4 HOH B 32 932 56 HOH HOH . K 4 HOH B 33 933 50 HOH HOH . K 4 HOH B 34 934 36 HOH HOH . K 4 HOH B 35 935 29 HOH HOH . K 4 HOH B 36 936 55 HOH HOH . K 4 HOH B 37 937 32 HOH HOH . K 4 HOH B 38 938 80 HOH HOH . K 4 HOH B 39 939 41 HOH HOH . K 4 HOH B 40 940 100 HOH HOH . K 4 HOH B 41 941 102 HOH HOH . L 4 HOH C 1 901 76 HOH HOH . L 4 HOH C 2 902 111 HOH HOH . L 4 HOH C 3 903 13 HOH HOH . L 4 HOH C 4 904 113 HOH HOH . L 4 HOH C 5 905 63 HOH HOH . L 4 HOH C 6 906 110 HOH HOH . L 4 HOH C 7 907 84 HOH HOH . L 4 HOH C 8 908 23 HOH HOH . L 4 HOH C 9 909 69 HOH HOH . L 4 HOH C 10 910 74 HOH HOH . L 4 HOH C 11 911 106 HOH HOH . L 4 HOH C 12 912 34 HOH HOH . L 4 HOH C 13 913 96 HOH HOH . L 4 HOH C 14 914 3 HOH HOH . L 4 HOH C 15 915 8 HOH HOH . L 4 HOH C 16 916 52 HOH HOH . L 4 HOH C 17 917 97 HOH HOH . L 4 HOH C 18 918 39 HOH HOH . L 4 HOH C 19 919 75 HOH HOH . L 4 HOH C 20 920 118 HOH HOH . L 4 HOH C 21 921 42 HOH HOH . L 4 HOH C 22 922 5 HOH HOH . L 4 HOH C 23 923 54 HOH HOH . L 4 HOH C 24 924 73 HOH HOH . L 4 HOH C 25 925 38 HOH HOH . L 4 HOH C 26 926 49 HOH HOH . L 4 HOH C 27 927 33 HOH HOH . L 4 HOH C 28 928 48 HOH HOH . L 4 HOH C 29 929 28 HOH HOH . L 4 HOH C 30 930 104 HOH HOH . L 4 HOH C 31 931 24 HOH HOH . L 4 HOH C 32 932 105 HOH HOH . L 4 HOH C 33 933 90 HOH HOH . L 4 HOH C 34 934 53 HOH HOH . L 4 HOH C 35 935 17 HOH HOH . L 4 HOH C 36 936 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . H 2 63.245 41.35 87.524 1 69.48 ? N1 FMN 801 C 1 HETATM 2 C C2 FMN . . . H 2 64.434 41.771 88.107 1 69 ? C2 FMN 801 C 1 HETATM 3 O O2 FMN . . . H 2 65.117 40.996 88.783 1 63.79 ? O2 FMN 801 C 1 HETATM 4 N N3 FMN . . . H 2 64.863 43.08 87.945 1 65.97 ? N3 FMN 801 C 1 HETATM 5 C C4 FMN . . . H 2 64.119 43.982 87.211 1 67.79 ? C4 FMN 801 C 1 HETATM 6 O O4 FMN . . . H 2 64.513 45.145 87.065 1 75.81 ? O4 FMN 801 C 1 HETATM 7 C C4A FMN . . . H 2 62.929 43.58 86.617 1 68.62 ? C4A FMN 801 C 1 HETATM 8 N N5 FMN . . . H 2 62.19 44.495 85.874 1 65.89 ? N5 FMN 801 C 1 HETATM 9 C C5A FMN . . . H 2 61.006 44.103 85.277 1 67.42 ? C5A FMN 801 C 1 HETATM 10 C C6 FMN . . . H 2 60.252 45.009 84.53 1 70.68 ? C6 FMN 801 C 1 HETATM 11 C C7 FMN . . . H 2 59.049 44.604 83.94 1 71.41 ? C7 FMN 801 C 1 HETATM 12 C C7M FMN . . . H 2 58.256 45.603 83.141 1 61.91 ? C7M FMN 801 C 1 HETATM 13 C C8 FMN . . . H 2 58.611 43.275 84.098 1 70.5 ? C8 FMN 801 C 1 HETATM 14 C C8M FMN . . . H 2 57.331 42.754 83.498 1 62.89 ? C8M FMN 801 C 1 HETATM 15 C C9 FMN . . . H 2 59.369 42.389 84.849 1 69.46 ? C9 FMN 801 C 1 HETATM 16 C C9A FMN . . . H 2 60.56 42.791 85.437 1 68.76 ? C9A FMN 801 C 1 HETATM 17 N N10 FMN . . . H 2 61.298 41.868 86.169 1 71.33 ? N10 FMN 801 C 1 HETATM 18 C C10 FMN . . . H 2 62.487 42.257 86.78 1 72.86 ? C10 FMN 801 C 1 HETATM 19 C C1' FMN . . . H 2 60.766 40.475 86.35 1 70.65 ? C1' FMN 801 C 1 HETATM 20 C C2' FMN . . . H 2 61.222 39.359 85.426 1 70.79 ? C2' FMN 801 C 1 HETATM 21 O O2' FMN . . . H 2 60.788 39.579 84.094 1 66.17 ? O2' FMN 801 C 1 HETATM 22 C C3' FMN . . . H 2 60.556 38.114 86.028 1 70.92 ? C3' FMN 801 C 1 HETATM 23 O O3' FMN . . . H 2 60.843 38.048 87.42 1 63.07 ? O3' FMN 801 C 1 HETATM 24 C C4' FMN . . . H 2 60.878 36.818 85.258 1 70.24 ? C4' FMN 801 C 1 HETATM 25 O O4' FMN . . . H 2 60.199 35.684 85.781 1 76.1 ? O4' FMN 801 C 1 HETATM 26 C C5' FMN . . . H 2 62.371 36.534 85.161 1 68.65 ? C5' FMN 801 C 1 HETATM 27 O O5' FMN . . . H 2 62.549 35.793 83.976 1 72.39 ? O5' FMN 801 C 1 HETATM 28 P P FMN . . . H 2 63.917 35.861 83.113 1 87.88 ? P FMN 801 C 1 HETATM 29 O O1P FMN . . . H 2 65.066 36.227 84.044 1 72.17 ? O1P FMN 801 C 1 HETATM 30 O O2P FMN . . . H 2 64.102 34.493 82.484 1 90.73 -1 O2P FMN 801 C 1 HETATM 31 O O3P FMN . . . H 2 63.849 36.868 81.974 1 76.48 ? O3P FMN 801 C 1 # _model_server_stats.io_time_ms 134 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #