data_6MVN # _model_server_result.job_id z7-w_u58joIjZSXAvO82Xg _model_server_result.datetime_utc '2024-10-19 19:41:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mvn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6MVN # _exptl.entry_id 6MVN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 269.337 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-oxo-N-[(3S)-2-oxotetrahydrofuran-3-yl]decanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.21 _cell.angle_gamma 90 _cell.entry_id 6MVN _cell.length_a 42.664 _cell.length_b 62.124 _cell.length_c 51.315 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MVN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 0.188079 0 -51.314655 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C14 H23 N O4' _chem_comp.formula_weight 269.337 _chem_comp.id 3M5 _chem_comp.mon_nstd_flag . _chem_comp.name 3-oxo-N-[(3S)-2-oxotetrahydrofuran-3-yl]decanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'N-(3-Oxodecanoyl)-L-homoserine lactone' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C 3M5 doub 1 n n C OAC 3M5 sing 2 n n C CA 3M5 sing 3 n n OAC CAB 3M5 sing 4 n n CA CB 3M5 sing 5 n n CA N 3M5 sing 6 n n CB CAB 3M5 sing 7 n n N CAG 3M5 sing 8 n n OAL CAG 3M5 doub 9 n n CAG CAH 3M5 sing 10 n n OAM CAI 3M5 doub 11 n n CAH CAI 3M5 sing 12 n n CAI CAJ 3M5 sing 13 n n CAJ CAN 3M5 sing 14 n n CAN CAO 3M5 sing 15 n n CAQ CAR 3M5 sing 16 n n CAQ CAP 3M5 sing 17 n n CAO CAP 3M5 sing 18 n n CAS CAR 3M5 sing 19 n n CA H1 3M5 sing 20 n n CB H2 3M5 sing 21 n n CB H3 3M5 sing 22 n n CAB H4 3M5 sing 23 n n CAB H5 3M5 sing 24 n n N H6 3M5 sing 25 n n CAH H7 3M5 sing 26 n n CAH H8 3M5 sing 27 n n CAJ H9 3M5 sing 28 n n CAJ H10 3M5 sing 29 n n CAN H11 3M5 sing 30 n n CAN H12 3M5 sing 31 n n CAO H13 3M5 sing 32 n n CAO H14 3M5 sing 33 n n CAP H15 3M5 sing 34 n n CAP H16 3M5 sing 35 n n CAQ H17 3M5 sing 36 n n CAQ H18 3M5 sing 37 n n CAR H19 3M5 sing 38 n n CAR H20 3M5 sing 39 n n CAS H21 3M5 sing 40 n n CAS H22 3M5 sing 41 n n CAS H23 3M5 sing 42 n n # _atom_sites.entry_id 6MVN _atom_sites.fract_transf_matrix[1][1] 0.023439 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000087 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016097 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3M5 A 1 301 1 3M5 LIG . D 2 3M5 B 1 301 1 3M5 LIG . E 3 HOH A 1 401 54 HOH HOH . E 3 HOH A 2 402 40 HOH HOH . E 3 HOH A 3 403 50 HOH HOH . E 3 HOH A 4 404 20 HOH HOH . E 3 HOH A 5 405 46 HOH HOH . E 3 HOH A 6 406 9 HOH HOH . E 3 HOH A 7 407 29 HOH HOH . E 3 HOH A 8 408 41 HOH HOH . E 3 HOH A 9 409 34 HOH HOH . E 3 HOH A 10 410 33 HOH HOH . E 3 HOH A 11 411 11 HOH HOH . E 3 HOH A 12 412 14 HOH HOH . E 3 HOH A 13 413 1 HOH HOH . E 3 HOH A 14 414 35 HOH HOH . E 3 HOH A 15 415 8 HOH HOH . E 3 HOH A 16 416 47 HOH HOH . E 3 HOH A 17 417 39 HOH HOH . E 3 HOH A 18 418 51 HOH HOH . E 3 HOH A 19 419 19 HOH HOH . E 3 HOH A 20 420 43 HOH HOH . E 3 HOH A 21 421 57 HOH HOH . E 3 HOH A 22 422 5 HOH HOH . E 3 HOH A 23 423 28 HOH HOH . E 3 HOH A 24 424 25 HOH HOH . E 3 HOH A 25 425 45 HOH HOH . E 3 HOH A 26 426 58 HOH HOH . E 3 HOH A 27 427 53 HOH HOH . E 3 HOH A 28 428 3 HOH HOH . E 3 HOH A 29 429 48 HOH HOH . E 3 HOH A 30 430 32 HOH HOH . E 3 HOH A 31 431 38 HOH HOH . E 3 HOH A 32 432 21 HOH HOH . E 3 HOH A 33 433 17 HOH HOH . E 3 HOH A 34 434 52 HOH HOH . E 3 HOH A 35 435 42 HOH HOH . E 3 HOH A 36 436 23 HOH HOH . F 3 HOH B 1 401 37 HOH HOH . F 3 HOH B 2 402 36 HOH HOH . F 3 HOH B 3 403 4 HOH HOH . F 3 HOH B 4 404 13 HOH HOH . F 3 HOH B 5 405 16 HOH HOH . F 3 HOH B 6 406 15 HOH HOH . F 3 HOH B 7 407 44 HOH HOH . F 3 HOH B 8 408 30 HOH HOH . F 3 HOH B 9 409 7 HOH HOH . F 3 HOH B 10 410 10 HOH HOH . F 3 HOH B 11 411 6 HOH HOH . F 3 HOH B 12 412 18 HOH HOH . F 3 HOH B 13 413 12 HOH HOH . F 3 HOH B 14 414 22 HOH HOH . F 3 HOH B 15 415 49 HOH HOH . F 3 HOH B 16 416 55 HOH HOH . F 3 HOH B 17 417 31 HOH HOH . F 3 HOH B 18 418 24 HOH HOH . F 3 HOH B 19 419 2 HOH HOH . F 3 HOH B 20 420 26 HOH HOH . F 3 HOH B 21 421 27 HOH HOH . F 3 HOH B 22 422 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA 3M5 . . . C 2 1.877 -15.999 -35.32 1 21.73 ? CA 3M5 301 A 1 HETATM 2 C CB 3M5 . . . C 2 0.395 -15.975 -35.724 1 19.97 ? CB 3M5 301 A 1 HETATM 3 C C 3M5 . . . C 2 1.761 -16.352 -33.836 1 21.26 ? C 3M5 301 A 1 HETATM 4 O O 3M5 . . . C 2 2.563 -16.788 -33.065 1 21.36 ? O 3M5 301 A 1 HETATM 5 O OAC 3M5 . . . C 2 0.495 -16.099 -33.372 1 19.06 ? OAC 3M5 301 A 1 HETATM 6 C CAB 3M5 . . . C 2 -0.29 -15.546 -34.431 1 21.83 ? CAB 3M5 301 A 1 HETATM 7 N N 3M5 . . . C 2 2.656 -17.009 -35.959 1 20.16 ? N 3M5 301 A 1 HETATM 8 C CAG 3M5 . . . C 2 3.963 -16.688 -36.397 1 25.6 ? CAG 3M5 301 A 1 HETATM 9 O OAL 3M5 . . . C 2 4.437 -15.563 -36.225 1 22.9 ? OAL 3M5 301 A 1 HETATM 10 C CAH 3M5 . . . C 2 4.758 -17.764 -37.046 1 23.63 ? CAH 3M5 301 A 1 HETATM 11 C CAI 3M5 . . . C 2 5.69 -18.393 -36.034 1 22.76 ? CAI 3M5 301 A 1 HETATM 12 O OAM 3M5 . . . C 2 5.577 -18.1 -34.856 1 23.18 ? OAM 3M5 301 A 1 HETATM 13 C CAJ 3M5 . . . C 2 6.72 -19.355 -36.517 1 18.74 ? CAJ 3M5 301 A 1 HETATM 14 C CAN 3M5 . . . C 2 7.581 -19.984 -35.406 1 26.25 ? CAN 3M5 301 A 1 HETATM 15 C CAO 3M5 . . . C 2 8.922 -20.411 -35.977 1 31.36 ? CAO 3M5 301 A 1 HETATM 16 C CAP 3M5 . . . C 2 8.725 -21.353 -37.145 1 29.54 ? CAP 3M5 301 A 1 HETATM 17 C CAQ 3M5 . . . C 2 10 -22.024 -37.606 1 30.52 ? CAQ 3M5 301 A 1 HETATM 18 C CAR 3M5 . . . C 2 10.615 -21.323 -38.801 1 33.91 ? CAR 3M5 301 A 1 HETATM 19 C CAS 3M5 . . . C 2 10.316 -22.029 -40.113 1 33.74 ? CAS 3M5 301 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #