data_6MVW # _model_server_result.job_id Hjto65BA4IcOMnUY7pFkig _model_server_result.datetime_utc '2024-10-27 14:31:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mvw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1301}' # _entry.id 6MVW # _exptl.entry_id 6MVW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 678.94 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MVW _cell.length_a 126.22 _cell.length_b 126.09 _cell.length_c 192.88 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MVW _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 N N N ? 2 O N N ? 2 R N N ? 2 S N N # _chem_comp.formula 'C36 H73 N O8 P 1' _chem_comp.formula_weight 678.94 _chem_comp.id PX4 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 PX4 sing 279 n n O1 H1P PX4 sing 280 n n O2 P1 PX4 doub 281 n n P1 O3 PX4 sing 282 n n P1 O4 PX4 sing 283 n n O3 C1 PX4 sing 284 n n C1 C2 PX4 sing 285 n n C1 H1 PX4 sing 286 n n C1 H2 PX4 sing 287 n n C2 N1 PX4 sing 288 n n C2 H3 PX4 sing 289 n n C2 H4 PX4 sing 290 n n N1 C3 PX4 sing 291 n n N1 C4 PX4 sing 292 n n N1 C5 PX4 sing 293 n n C3 H5 PX4 sing 294 n n C3 H6 PX4 sing 295 n n C3 H7 PX4 sing 296 n n C4 H8 PX4 sing 297 n n C4 H9 PX4 sing 298 n n C4 H10 PX4 sing 299 n n C5 H11 PX4 sing 300 n n C5 H12 PX4 sing 301 n n C5 H13 PX4 sing 302 n n O4 C6 PX4 sing 303 n n C6 C7 PX4 sing 304 n n C6 H14 PX4 sing 305 n n C6 H15 PX4 sing 306 n n C7 C8 PX4 sing 307 n n C7 O7 PX4 sing 308 n n C7 H16 PX4 sing 309 n n C8 O5 PX4 sing 310 n n C8 H17 PX4 sing 311 n n C8 H18 PX4 sing 312 n n O5 C9 PX4 sing 313 n n C9 O6 PX4 doub 314 n n C9 C10 PX4 sing 315 n n C10 C11 PX4 sing 316 n n C10 H19 PX4 sing 317 n n C10 H20 PX4 sing 318 n n C11 C12 PX4 sing 319 n n C11 H21 PX4 sing 320 n n C11 H22 PX4 sing 321 n n C12 C13 PX4 sing 322 n n C12 H23 PX4 sing 323 n n C12 H24 PX4 sing 324 n n C13 C14 PX4 sing 325 n n C13 H25 PX4 sing 326 n n C13 H26 PX4 sing 327 n n C14 C15 PX4 sing 328 n n C14 H27 PX4 sing 329 n n C14 H28 PX4 sing 330 n n C15 C16 PX4 sing 331 n n C15 H29 PX4 sing 332 n n C15 H30 PX4 sing 333 n n C16 C17 PX4 sing 334 n n C16 H31 PX4 sing 335 n n C16 H32 PX4 sing 336 n n C17 C18 PX4 sing 337 n n C17 H33 PX4 sing 338 n n C17 H34 PX4 sing 339 n n C18 C19 PX4 sing 340 n n C18 H35 PX4 sing 341 n n C18 H36 PX4 sing 342 n n C19 C20 PX4 sing 343 n n C19 H37 PX4 sing 344 n n C19 H38 PX4 sing 345 n n C20 C21 PX4 sing 346 n n C20 H39 PX4 sing 347 n n C20 H40 PX4 sing 348 n n C21 C22 PX4 sing 349 n n C21 H41 PX4 sing 350 n n C21 H42 PX4 sing 351 n n C22 H43 PX4 sing 352 n n C22 H44 PX4 sing 353 n n C22 H45 PX4 sing 354 n n O7 C23 PX4 sing 355 n n C23 O8 PX4 doub 356 n n C23 C24 PX4 sing 357 n n C24 C25 PX4 sing 358 n n C24 H46 PX4 sing 359 n n C24 H47 PX4 sing 360 n n C25 C26 PX4 sing 361 n n C25 H48 PX4 sing 362 n n C25 H49 PX4 sing 363 n n C26 C27 PX4 sing 364 n n C26 H50 PX4 sing 365 n n C26 H51 PX4 sing 366 n n C27 C28 PX4 sing 367 n n C27 H52 PX4 sing 368 n n C27 H53 PX4 sing 369 n n C28 C29 PX4 sing 370 n n C28 H54 PX4 sing 371 n n C28 H55 PX4 sing 372 n n C29 C30 PX4 sing 373 n n C29 H56 PX4 sing 374 n n C29 H57 PX4 sing 375 n n C30 C31 PX4 sing 376 n n C30 H58 PX4 sing 377 n n C30 H59 PX4 sing 378 n n C31 C32 PX4 sing 379 n n C31 H60 PX4 sing 380 n n C31 H61 PX4 sing 381 n n C32 C33 PX4 sing 382 n n C32 H62 PX4 sing 383 n n C32 H63 PX4 sing 384 n n C33 C34 PX4 sing 385 n n C33 H64 PX4 sing 386 n n C33 H65 PX4 sing 387 n n C34 C35 PX4 sing 388 n n C34 H66 PX4 sing 389 n n C34 H67 PX4 sing 390 n n C35 C36 PX4 sing 391 n n C35 H68 PX4 sing 392 n n C35 H69 PX4 sing 393 n n C36 H70 PX4 sing 394 n n C36 H71 PX4 sing 395 n n C36 H72 PX4 sing 396 n n # _atom_sites.entry_id 6MVW _atom_sites.fract_transf_matrix[1][1] 0.007923 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007931 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005185 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PX4 A 1 1301 1 PX4 PX4 . F 2 PX4 A 1 1302 7 PX4 PX4 . G 2 PX4 A 1 1303 10 PX4 PX4 . H 3 PO4 A 1 1304 3 PO4 PO4 . I 2 PX4 B 1 2301 6 PX4 PX4 . J 2 PX4 B 1 2302 8 PX4 PX4 . K 2 PX4 B 1 2303 9 PX4 PX4 . L 3 PO4 B 1 2304 1 PO4 PO4 . M 3 PO4 B 1 2305 7 PO4 PO4 . N 2 PX4 C 1 1301 3 PX4 PX4 . O 2 PX4 C 1 1302 5 PX4 PX4 . P 3 PO4 C 1 1303 2 PO4 PO4 . Q 3 PO4 C 1 1304 6 PO4 PO4 . R 2 PX4 D 1 2301 2 PX4 PX4 . S 2 PX4 D 1 2302 4 PX4 PX4 . T 3 PO4 D 1 2303 4 PO4 PO4 . U 3 PO4 D 1 2304 5 PO4 PO4 . V 3 PO4 D 1 2305 8 PO4 PO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PX4 . . . N 2 140.39 185.553 8.086 1 127.87 ? O1 PX4 1301 C 1 HETATM 2 O O2 PX4 . . . N 2 140.599 184.083 6.1 1 119.07 ? O2 PX4 1301 C 1 HETATM 3 P P1 PX4 . . . N 2 139.677 184.527 7.228 1 124.03 ? P1 PX4 1301 C 1 HETATM 4 O O3 PX4 . . . N 2 138.363 185.156 6.608 1 116.61 ? O3 PX4 1301 C 1 HETATM 5 C C1 PX4 . . . N 2 137.403 185.723 7.479 1 114.02 ? C1 PX4 1301 C 1 HETATM 6 C C2 PX4 . . . N 2 136.369 184.635 7.847 1 107.82 ? C2 PX4 1301 C 1 HETATM 7 N N1 PX4 . . . N 2 135.425 185.111 8.863 1 100.61 ? N1 PX4 1301 C 1 HETATM 8 C C3 PX4 . . . N 2 134.458 185.988 8.25 1 98.48 ? C3 PX4 1301 C 1 HETATM 9 C C4 PX4 . . . N 2 134.756 183.998 9.423 1 94.54 ? C4 PX4 1301 C 1 HETATM 10 C C5 PX4 . . . N 2 136.137 185.836 9.93 1 101.97 ? C5 PX4 1301 C 1 HETATM 11 O O4 PX4 . . . N 2 139.27 183.251 8.112 1 128.22 ? O4 PX4 1301 C 1 HETATM 12 C C6 PX4 . . . N 2 140.187 182.772 9.107 1 114.59 ? C6 PX4 1301 C 1 HETATM 13 C C7 PX4 . . . N 2 139.624 183.029 10.508 1 104.38 ? C7 PX4 1301 C 1 HETATM 14 C C8 PX4 . . . N 2 140.189 184.329 11.032 1 89.56 ? C8 PX4 1301 C 1 HETATM 15 O O5 PX4 . . . N 2 140.238 184.279 12.449 1 79.65 ? O5 PX4 1301 C 1 HETATM 16 C C9 PX4 . . . N 2 141.548 184.013 12.982 1 84.42 ? C9 PX4 1301 C 1 HETATM 17 O O6 PX4 . . . N 2 142.22 183.124 12.529 1 95.07 ? O6 PX4 1301 C 1 HETATM 18 C C10 PX4 . . . N 2 142.088 184.888 14.144 1 73.91 ? C10 PX4 1301 C 1 HETATM 19 C C11 PX4 . . . N 2 141.041 184.922 15.289 1 58.11 ? C11 PX4 1301 C 1 HETATM 20 C C12 PX4 . . . N 2 141.542 183.996 16.457 1 51.44 ? C12 PX4 1301 C 1 HETATM 21 C C13 PX4 . . . N 2 142.792 184.662 17.079 1 38.16 ? C13 PX4 1301 C 1 HETATM 22 C C14 PX4 . . . N 2 142.725 184.614 18.609 1 46.08 ? C14 PX4 1301 C 1 HETATM 23 C C15 PX4 . . . N 2 141.257 184.73 19.122 1 39.64 ? C15 PX4 1301 C 1 HETATM 24 C C16 PX4 . . . N 2 141.168 184.16 20.576 1 51.71 ? C16 PX4 1301 C 1 HETATM 25 C C17 PX4 . . . N 2 142.505 184.413 21.315 1 55.02 ? C17 PX4 1301 C 1 HETATM 26 C C18 PX4 . . . N 2 142.435 183.908 22.78 1 50.83 ? C18 PX4 1301 C 1 HETATM 27 C C19 PX4 . . . N 2 143.704 183.188 23.104 1 52.77 ? C19 PX4 1301 C 1 HETATM 28 C C20 PX4 . . . N 2 144.045 183.382 24.592 1 43.76 ? C20 PX4 1301 C 1 HETATM 29 C C21 PX4 . . . N 2 144.771 182.141 25.116 1 40.05 ? C21 PX4 1301 C 1 HETATM 30 C C22 PX4 . . . N 2 146.195 182.055 24.475 1 33.17 ? C22 PX4 1301 C 1 HETATM 31 O O7 PX4 . . . N 2 138.195 183.094 10.477 1 105.25 ? O7 PX4 1301 C 1 HETATM 32 C C23 PX4 . . . N 2 137.559 182.704 11.7 1 95.68 ? C23 PX4 1301 C 1 HETATM 33 O O8 PX4 . . . N 2 137.408 181.519 11.966 1 84.31 ? O8 PX4 1301 C 1 HETATM 34 C C24 PX4 . . . N 2 137.062 183.754 12.685 1 96.95 ? C24 PX4 1301 C 1 HETATM 35 C C25 PX4 . . . N 2 136.684 183.069 14.012 1 88.95 ? C25 PX4 1301 C 1 HETATM 36 C C26 PX4 . . . N 2 137.899 183.128 14.997 1 81.57 ? C26 PX4 1301 C 1 HETATM 37 C C27 PX4 . . . N 2 137.368 183.206 16.452 1 68.27 ? C27 PX4 1301 C 1 HETATM 38 C C28 PX4 . . . N 2 138.038 182.117 17.301 1 68.58 ? C28 PX4 1301 C 1 HETATM 39 C C29 PX4 . . . N 2 137.394 182.069 18.671 1 84.48 ? C29 PX4 1301 C 1 HETATM 40 C C30 PX4 . . . N 2 138.187 181.092 19.566 1 81.2 ? C30 PX4 1301 C 1 HETATM 41 C C31 PX4 . . . N 2 138.422 181.758 20.939 1 68.33 ? C31 PX4 1301 C 1 HETATM 42 C C32 PX4 . . . N 2 138.95 180.714 21.96 1 71.82 ? C32 PX4 1301 C 1 HETATM 43 C C33 PX4 . . . N 2 139.495 181.463 23.223 1 84.56 ? C33 PX4 1301 C 1 HETATM 44 C C34 PX4 . . . N 2 138.555 181.215 24.414 1 95.67 ? C34 PX4 1301 C 1 HETATM 45 C C35 PX4 . . . N 2 137.305 182.124 24.291 1 97.69 ? C35 PX4 1301 C 1 HETATM 46 C C36 PX4 . . . N 2 136.312 181.773 25.39 1 87.92 ? C36 PX4 1301 C 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 46 #