data_6MVY
#
_model_server_result.job_id            SKhJDpBbnQBFCGPjPtfGFw 
_model_server_result.datetime_utc      '2024-10-27 14:30:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mvy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1303}' 
#
_entry.id    6MVY 
#
_exptl.entry_id    6MVY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              678.94 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MVY 
_cell.length_a            126.596 
_cell.length_b            126.596 
_cell.length_c            192.219 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MVY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,M 1 1,2,3,4 
B,H,I,J,K,L,N 2 1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_465 -x-1,-y+1,z -1 0 0 0 -1 0 0 0 1 -126.596 126.596 0 
3 'crystal symmetry operation' 3_565 -y,x+1,z 0 -1 0 1 0 0 0 0 1 0 126.596 0 
4 'crystal symmetry operation' 4_455 y-1,-x,z 0 1 0 -1 0 0 0 0 1 -126.596 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
#
_chem_comp.formula           'C36 H73 N O8 P 1' 
_chem_comp.formula_weight    678.94 
_chem_comp.id                PX4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 PX4 sing 277 n n 
O1 H1P PX4 sing 278 n n 
O2 P1 PX4 doub 279 n n 
P1 O3 PX4 sing 280 n n 
P1 O4 PX4 sing 281 n n 
O3 C1 PX4 sing 282 n n 
C1 C2 PX4 sing 283 n n 
C1 H1 PX4 sing 284 n n 
C1 H2 PX4 sing 285 n n 
C2 N1 PX4 sing 286 n n 
C2 H3 PX4 sing 287 n n 
C2 H4 PX4 sing 288 n n 
N1 C3 PX4 sing 289 n n 
N1 C4 PX4 sing 290 n n 
N1 C5 PX4 sing 291 n n 
C3 H5 PX4 sing 292 n n 
C3 H6 PX4 sing 293 n n 
C3 H7 PX4 sing 294 n n 
C4 H8 PX4 sing 295 n n 
C4 H9 PX4 sing 296 n n 
C4 H10 PX4 sing 297 n n 
C5 H11 PX4 sing 298 n n 
C5 H12 PX4 sing 299 n n 
C5 H13 PX4 sing 300 n n 
O4 C6 PX4 sing 301 n n 
C6 C7 PX4 sing 302 n n 
C6 H14 PX4 sing 303 n n 
C6 H15 PX4 sing 304 n n 
C7 C8 PX4 sing 305 n n 
C7 O7 PX4 sing 306 n n 
C7 H16 PX4 sing 307 n n 
C8 O5 PX4 sing 308 n n 
C8 H17 PX4 sing 309 n n 
C8 H18 PX4 sing 310 n n 
O5 C9 PX4 sing 311 n n 
C9 O6 PX4 doub 312 n n 
C9 C10 PX4 sing 313 n n 
C10 C11 PX4 sing 314 n n 
C10 H19 PX4 sing 315 n n 
C10 H20 PX4 sing 316 n n 
C11 C12 PX4 sing 317 n n 
C11 H21 PX4 sing 318 n n 
C11 H22 PX4 sing 319 n n 
C12 C13 PX4 sing 320 n n 
C12 H23 PX4 sing 321 n n 
C12 H24 PX4 sing 322 n n 
C13 C14 PX4 sing 323 n n 
C13 H25 PX4 sing 324 n n 
C13 H26 PX4 sing 325 n n 
C14 C15 PX4 sing 326 n n 
C14 H27 PX4 sing 327 n n 
C14 H28 PX4 sing 328 n n 
C15 C16 PX4 sing 329 n n 
C15 H29 PX4 sing 330 n n 
C15 H30 PX4 sing 331 n n 
C16 C17 PX4 sing 332 n n 
C16 H31 PX4 sing 333 n n 
C16 H32 PX4 sing 334 n n 
C17 C18 PX4 sing 335 n n 
C17 H33 PX4 sing 336 n n 
C17 H34 PX4 sing 337 n n 
C18 C19 PX4 sing 338 n n 
C18 H35 PX4 sing 339 n n 
C18 H36 PX4 sing 340 n n 
C19 C20 PX4 sing 341 n n 
C19 H37 PX4 sing 342 n n 
C19 H38 PX4 sing 343 n n 
C20 C21 PX4 sing 344 n n 
C20 H39 PX4 sing 345 n n 
C20 H40 PX4 sing 346 n n 
C21 C22 PX4 sing 347 n n 
C21 H41 PX4 sing 348 n n 
C21 H42 PX4 sing 349 n n 
C22 H43 PX4 sing 350 n n 
C22 H44 PX4 sing 351 n n 
C22 H45 PX4 sing 352 n n 
O7 C23 PX4 sing 353 n n 
C23 O8 PX4 doub 354 n n 
C23 C24 PX4 sing 355 n n 
C24 C25 PX4 sing 356 n n 
C24 H46 PX4 sing 357 n n 
C24 H47 PX4 sing 358 n n 
C25 C26 PX4 sing 359 n n 
C25 H48 PX4 sing 360 n n 
C25 H49 PX4 sing 361 n n 
C26 C27 PX4 sing 362 n n 
C26 H50 PX4 sing 363 n n 
C26 H51 PX4 sing 364 n n 
C27 C28 PX4 sing 365 n n 
C27 H52 PX4 sing 366 n n 
C27 H53 PX4 sing 367 n n 
C28 C29 PX4 sing 368 n n 
C28 H54 PX4 sing 369 n n 
C28 H55 PX4 sing 370 n n 
C29 C30 PX4 sing 371 n n 
C29 H56 PX4 sing 372 n n 
C29 H57 PX4 sing 373 n n 
C30 C31 PX4 sing 374 n n 
C30 H58 PX4 sing 375 n n 
C30 H59 PX4 sing 376 n n 
C31 C32 PX4 sing 377 n n 
C31 H60 PX4 sing 378 n n 
C31 H61 PX4 sing 379 n n 
C32 C33 PX4 sing 380 n n 
C32 H62 PX4 sing 381 n n 
C32 H63 PX4 sing 382 n n 
C33 C34 PX4 sing 383 n n 
C33 H64 PX4 sing 384 n n 
C33 H65 PX4 sing 385 n n 
C34 C35 PX4 sing 386 n n 
C34 H66 PX4 sing 387 n n 
C34 H67 PX4 sing 388 n n 
C35 C36 PX4 sing 389 n n 
C35 H68 PX4 sing 390 n n 
C35 H69 PX4 sing 391 n n 
C36 H70 PX4 sing 392 n n 
C36 H71 PX4 sing 393 n n 
C36 H72 PX4 sing 394 n n 
#
_atom_sites.entry_id                     6MVY 
_atom_sites.fract_transf_matrix[1][1]    0.007899 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007899 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005202 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PX4 A 1 1301 1 PX4 PX4 . 
D 2 PX4 A 1 1302 2 PX4 PX4 . 
E 2 PX4 A 1 1303 3 PX4 PX4 . 
F 2 PX4 A 1 1304 8 PX4 PX4 . 
G 3 SO4 A 1 1305 1 SO4 SO4 . 
H 2 PX4 B 1 1301 4 PX4 PX4 . 
I 2 PX4 B 1 1302 5 PX4 PX4 . 
J 2 PX4 B 1 1303 6 PX4 PX4 . 
K 2 PX4 B 1 1304 7 PX4 PX4 . 
L 3 SO4 B 1 1305 2 SO4 SO4 . 
M 4 HOH A 1 1401 42 HOH HOH . 
M 4 HOH A 2 1402 39 HOH HOH . 
M 4 HOH A 3 1403 25 HOH HOH . 
M 4 HOH A 4 1404 28 HOH HOH . 
M 4 HOH A 5 1405 13 HOH HOH . 
M 4 HOH A 6 1406 4 HOH HOH . 
M 4 HOH A 7 1407 22 HOH HOH . 
M 4 HOH A 8 1408 23 HOH HOH . 
M 4 HOH A 9 1409 32 HOH HOH . 
M 4 HOH A 10 1410 45 HOH HOH . 
M 4 HOH A 11 1411 46 HOH HOH . 
M 4 HOH A 12 1412 37 HOH HOH . 
M 4 HOH A 13 1413 19 HOH HOH . 
M 4 HOH A 14 1414 9 HOH HOH . 
M 4 HOH A 15 1415 36 HOH HOH . 
M 4 HOH A 16 1416 24 HOH HOH . 
M 4 HOH A 17 1417 38 HOH HOH . 
M 4 HOH A 18 1418 3 HOH HOH . 
M 4 HOH A 19 1419 41 HOH HOH . 
M 4 HOH A 20 1420 21 HOH HOH . 
M 4 HOH A 21 1421 31 HOH HOH . 
M 4 HOH A 22 1422 35 HOH HOH . 
M 4 HOH A 23 1423 30 HOH HOH . 
M 4 HOH A 24 1424 29 HOH HOH . 
N 4 HOH B 1 1401 33 HOH HOH . 
N 4 HOH B 2 1402 26 HOH HOH . 
N 4 HOH B 3 1403 43 HOH HOH . 
N 4 HOH B 4 1404 5 HOH HOH . 
N 4 HOH B 5 1405 15 HOH HOH . 
N 4 HOH B 6 1406 27 HOH HOH . 
N 4 HOH B 7 1407 17 HOH HOH . 
N 4 HOH B 8 1408 44 HOH HOH . 
N 4 HOH B 9 1409 8 HOH HOH . 
N 4 HOH B 10 1410 16 HOH HOH . 
N 4 HOH B 11 1411 6 HOH HOH . 
N 4 HOH B 12 1412 34 HOH HOH . 
N 4 HOH B 13 1413 11 HOH HOH . 
N 4 HOH B 14 1414 14 HOH HOH . 
N 4 HOH B 15 1415 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 PX4 . . . E 2 -77.889 89.297 -6.439 1 156.52 ? O1 PX4 1303 A 1 
HETATM 2 O O2 PX4 . . . E 2 -75.911 90.781 -6.725 1 167.61 ? O2 PX4 1303 A 1 
HETATM 3 P P1 PX4 . . . E 2 -77.171 90.238 -7.39 1 160.27 ? P1 PX4 1303 A 1 
HETATM 4 O O3 PX4 . . . E 2 -78.136 91.444 -7.725 1 171.21 ? O3 PX4 1303 A 1 
HETATM 5 O O4 PX4 . . . E 2 -76.781 89.484 -8.755 1 137.79 ? O4 PX4 1303 A 1 
HETATM 6 C C6 PX4 . . . E 2 -75.54 89.788 -9.408 1 127.02 ? C6 PX4 1303 A 1 
HETATM 7 C C7 PX4 . . . E 2 -75.48 88.953 -10.688 1 132.11 ? C7 PX4 1303 A 1 
HETATM 8 C C8 PX4 . . . E 2 -76.738 89.23 -11.491 1 133.63 ? C8 PX4 1303 A 1 
HETATM 9 O O5 PX4 . . . E 2 -76.495 90.155 -12.546 1 134.33 ? O5 PX4 1303 A 1 
HETATM 10 C C9 PX4 . . . E 2 -77.433 90.071 -13.635 1 124.35 ? C9 PX4 1303 A 1 
HETATM 11 O O6 PX4 . . . E 2 -78.571 89.751 -13.432 1 126.4 ? O6 PX4 1303 A 1 
HETATM 12 C C10 PX4 . . . E 2 -76.984 90.395 -15.08 1 118.19 ? C10 PX4 1303 A 1 
HETATM 13 C C11 PX4 . . . E 2 -78.171 90.153 -16.056 1 113.32 ? C11 PX4 1303 A 1 
HETATM 14 C C12 PX4 . . . E 2 -77.579 90.076 -17.512 1 106.69 ? C12 PX4 1303 A 1 
HETATM 15 C C13 PX4 . . . E 2 -78.683 90.261 -18.568 1 98.83 ? C13 PX4 1303 A 1 
HETATM 16 C C14 PX4 . . . E 2 -77.984 90.649 -19.874 1 103.18 ? C14 PX4 1303 A 1 
HETATM 17 C C15 PX4 . . . E 2 -78.2 89.548 -20.948 1 110.85 ? C15 PX4 1303 A 1 
HETATM 18 C C16 PX4 . . . E 2 -77.607 90.039 -22.309 1 115.58 ? C16 PX4 1303 A 1 
HETATM 19 C C17 PX4 . . . E 2 -78.652 89.855 -23.441 1 114.3 ? C17 PX4 1303 A 1 
HETATM 20 C C18 PX4 . . . E 2 -79.005 88.354 -23.621 1 112.78 ? C18 PX4 1303 A 1 
HETATM 21 C C19 PX4 . . . E 2 -79.481 88.101 -25.017 1 113.66 ? C19 PX4 1303 A 1 
HETATM 22 C C20 PX4 . . . E 2 -81.02 88.158 -25.102 1 102.88 ? C20 PX4 1303 A 1 
HETATM 23 C C21 PX4 . . . E 2 -81.487 87.115 -26.124 1 93.89 ? C21 PX4 1303 A 1 
HETATM 24 C C22 PX4 . . . E 2 -82.991 86.759 -25.874 1 93.17 ? C22 PX4 1303 A 1 
HETATM 25 O O7 PX4 . . . E 2 -74.284 89.256 -11.425 1 137.72 ? O7 PX4 1303 A 1 
HETATM 26 C C23 PX4 . . . E 2 -73.918 88.354 -12.487 1 124.23 ? C23 PX4 1303 A 1 
HETATM 27 O O8 PX4 . . . E 2 -74.266 87.188 -12.472 1 113.97 ? O8 PX4 1303 A 1 
HETATM 28 C C24 PX4 . . . E 2 -73.095 88.831 -13.678 1 118.35 ? C24 PX4 1303 A 1 
HETATM 29 C C25 PX4 . . . E 2 -73.934 88.643 -14.957 1 113.24 ? C25 PX4 1303 A 1 
HETATM 30 C C26 PX4 . . . E 2 -73.224 87.657 -15.946 1 112.41 ? C26 PX4 1303 A 1 
HETATM 31 C C27 PX4 . . . E 2 -74.231 87.242 -17.058 1 116.01 ? C27 PX4 1303 A 1 
HETATM 32 C C28 PX4 . . . E 2 -74.25 88.236 -18.238 1 110.76 ? C28 PX4 1303 A 1 
HETATM 33 C C29 PX4 . . . E 2 -73.892 87.489 -19.51 1 108.99 ? C29 PX4 1303 A 1 
HETATM 34 C C30 PX4 . . . E 2 -75.076 87.524 -20.502 1 105.77 ? C30 PX4 1303 A 1 
HETATM 35 C C31 PX4 . . . E 2 -74.668 86.838 -21.831 1 95.44 ? C31 PX4 1303 A 1 
HETATM 36 C C32 PX4 . . . E 2 -75.897 86.749 -22.781 1 85.97 ? C32 PX4 1303 A 1 
HETATM 37 C C33 PX4 . . . E 2 -75.456 86.135 -24.152 1 91.76 ? C33 PX4 1303 A 1 
HETATM 38 C C34 PX4 . . . E 2 -76.686 85.716 -24.971 1 97.34 ? C34 PX4 1303 A 1 
HETATM 39 C C35 PX4 . . . E 2 -76.303 85.739 -26.472 1 103.3 ? C35 PX4 1303 A 1 
HETATM 40 C C36 PX4 . . . E 2 -77.465 85.232 -27.322 1 107.81 ? C36 PX4 1303 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           356 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           40 
#