data_6MW3
#
_model_server_result.job_id            jrXdsBDIQUOng0F7mYaZsA 
_model_server_result.datetime_utc      '2025-03-03 16:58:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mw3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1001}' 
#
_entry.id    6MW3 
#
_exptl.entry_id    6MW3 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              491.182 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MW3 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MW3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? 24-meric 24 'representative helical assembly' 1 
? tetrameric 4 'helical asymmetric unit' 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 (1-6) 
A,B,C,D,E,F,G,H 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'helical symmetry operation' ? ? 0.153602 -0.970049 0.188181 0.962966 0.104244 -0.248656 0.221591 0.219406 0.950136 219.73829 21.56073 21.54689 
3 'helical symmetry operation' ? ? -0.868831 -0.208835 0.448911 0.193197 -0.977814 -0.080965 0.455859 0.016383 0.889901 236.63036 230.05104 95.44202 
4 'helical symmetry operation' ? ? -0.23508 0.919532 0.314957 -0.929867 -0.307105 0.202567 0.282992 -0.245248 0.927237 50.88495 249.67691 215.13967 
5 'helical symmetry operation' ? ? 0.919161 0.392998 0.026367 -0.393675 0.914447 0.093846 0.01277 -0.09664 0.995237 25.84087 43.09278 292.01515 
6 'helical symmetry operation' ? ? 0.525472 -0.844878 0.1003 0.840907 0.497799 -0.212298 0.129437 0.1959 0.972044 236.85717 -21.67444 314.18185 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
#
_chem_comp.formula           'C10 H16 N5 O12 P3' 
_chem_comp.formula_weight    491.182 
_chem_comp.id                DTP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G DTP doub 83 n n 
PG O2G DTP sing 84 n n 
PG O3G DTP sing 85 n n 
PG O3B DTP sing 86 n n 
O2G HOG2 DTP sing 87 n n 
O3G HOG3 DTP sing 88 n n 
PB O1B DTP doub 89 n n 
PB O2B DTP sing 90 n n 
PB O3B DTP sing 91 n n 
PB O3A DTP sing 92 n n 
O2B HOB2 DTP sing 93 n n 
PA O1A DTP doub 94 n n 
PA O2A DTP sing 95 n n 
PA O3A DTP sing 96 n n 
PA O5' DTP sing 97 n n 
O2A HOA2 DTP sing 98 n n 
O5' C5' DTP sing 99 n n 
C5' C4' DTP sing 100 n n 
C5' "H5'1" DTP sing 101 n n 
C5' "H5'2" DTP sing 102 n n 
C4' O4' DTP sing 103 n n 
C4' C3' DTP sing 104 n n 
C4' H4' DTP sing 105 n n 
O4' C1' DTP sing 106 n n 
C3' O3' DTP sing 107 n n 
C3' C2' DTP sing 108 n n 
C3' H3' DTP sing 109 n n 
O3' HO3' DTP sing 110 n n 
C2' C1' DTP sing 111 n n 
C2' "H2'1" DTP sing 112 n n 
C2' "H2'2" DTP sing 113 n n 
C1' N9 DTP sing 114 n n 
C1' H1' DTP sing 115 n n 
N9 C8 DTP sing 116 n y 
N9 C4 DTP sing 117 n y 
C8 N7 DTP doub 118 n y 
C8 H8 DTP sing 119 n n 
N7 C5 DTP sing 120 n y 
C5 C6 DTP sing 121 n y 
C5 C4 DTP doub 122 n y 
C6 N6 DTP sing 123 n n 
C6 N1 DTP doub 124 n y 
N6 HN61 DTP sing 125 n n 
N6 HN62 DTP sing 126 n n 
N1 C2 DTP sing 127 n y 
C2 N3 DTP doub 128 n y 
C2 H2 DTP sing 129 n n 
N3 C4 DTP sing 130 n y 
#
_atom_sites.entry_id                     6MW3 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 DTP C 1 1001 1001 DTP DTP . 
F 3 DTP C 1 1002 1003 DTP DTP . 
G 3 DTP D 1 1001 1001 DTP DTP . 
H 3 DTP D 1 1002 1003 DTP DTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG DTP . . . G 3 143.604 165.21 114.201 1 113.04 ? PG DTP 1001 D 1 
HETATM 2 O O1G DTP . . . G 3 145.028 164.724 114.16 1 113.04 ? O1G DTP 1001 D 1 
HETATM 3 O O2G DTP . . . G 3 143.262 165.661 115.595 1 113.04 ? O2G DTP 1001 D 1 
HETATM 4 O O3G DTP . . . G 3 142.69 164.084 113.795 1 113.04 ? O3G DTP 1001 D 1 
HETATM 5 P PB DTP . . . G 3 143.158 166.491 111.591 1 113.04 ? PB DTP 1001 D 1 
HETATM 6 O O1B DTP . . . G 3 142.211 167.608 111.253 1 113.04 ? O1B DTP 1001 D 1 
HETATM 7 O O2B DTP . . . G 3 144.459 166.71 110.868 1 113.04 ? O2B DTP 1001 D 1 
HETATM 8 O O3B DTP . . . G 3 143.435 166.44 113.203 1 113.04 ? O3B DTP 1001 D 1 
HETATM 9 P PA DTP . . . G 3 141.167 164.781 110.199 1 113.04 ? PA DTP 1001 D 1 
HETATM 10 O O1A DTP . . . G 3 141.552 164.928 108.75 1 113.04 ? O1A DTP 1001 D 1 
HETATM 11 O O2A DTP . . . G 3 140.081 165.76 110.559 1 113.04 ? O2A DTP 1001 D 1 
HETATM 12 O O3A DTP . . . G 3 142.481 165.073 111.129 1 113.04 ? O3A DTP 1001 D 1 
HETATM 13 O O5' DTP . . . G 3 140.619 163.257 110.434 1 113.04 ? O5' DTP 1001 D 1 
HETATM 14 C C5' DTP . . . G 3 141.274 162.432 111.338 1 113.04 ? C5' DTP 1001 D 1 
HETATM 15 C C4' DTP . . . G 3 141.162 160.999 110.872 1 113.04 ? C4' DTP 1001 D 1 
HETATM 16 O O4' DTP . . . G 3 139.868 160.438 111.228 1 113.04 ? O4' DTP 1001 D 1 
HETATM 17 C C3' DTP . . . G 3 141.289 160.945 109.356 1 113.04 ? C3' DTP 1001 D 1 
HETATM 18 O O3' DTP . . . G 3 142.579 160.444 109.022 1 113.04 ? O3' DTP 1001 D 1 
HETATM 19 C C2' DTP . . . G 3 140.211 159.923 108.937 1 113.04 ? C2' DTP 1001 D 1 
HETATM 20 C C1' DTP . . . G 3 139.167 160.045 110.054 1 113.04 ? C1' DTP 1001 D 1 
HETATM 21 N N9 DTP . . . G 3 138.116 161.028 109.761 1 113.04 ? N9 DTP 1001 D 1 
HETATM 22 C C8 DTP . . . G 3 137.837 162.346 109.594 1 113.04 ? C8 DTP 1001 D 1 
HETATM 23 N N7 DTP . . . G 3 136.539 162.499 109.326 1 113.04 ? N7 DTP 1001 D 1 
HETATM 24 C C5 DTP . . . G 3 135.982 161.288 109.316 1 113.04 ? C5 DTP 1001 D 1 
HETATM 25 C C6 DTP . . . G 3 134.691 160.867 109.095 1 113.04 ? C6 DTP 1001 D 1 
HETATM 26 N N6 DTP . . . G 3 133.723 161.749 108.831 1 113.04 ? N6 DTP 1001 D 1 
HETATM 27 N N1 DTP . . . G 3 134.401 159.578 109.144 1 113.04 ? N1 DTP 1001 D 1 
HETATM 28 C C2 DTP . . . G 3 135.421 158.74 109.418 1 113.04 ? C2 DTP 1001 D 1 
HETATM 29 N N3 DTP . . . G 3 136.682 159.04 109.64 1 113.04 ? N3 DTP 1001 D 1 
HETATM 30 C C4 DTP . . . G 3 136.984 160.348 109.591 1 113.04 ? C4 DTP 1001 D 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           30 
#