data_6MWA # _model_server_result.job_id 9HZxHjFkjRsh9sA6oc56hA _model_server_result.datetime_utc '2024-11-23 03:04:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mwa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2303}' # _entry.id 6MWA # _exptl.entry_id 6MWA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 678.94 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MWA _cell.length_a 124.772 _cell.length_b 124.772 _cell.length_c 189.797 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MWA _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -124.772 -124.772 0 3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -124.772 0 0 4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -124.772 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C36 H73 N O8 P 1' _chem_comp.formula_weight 678.94 _chem_comp.id PX4 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 PX4 sing 367 n n O1 H1P PX4 sing 368 n n O2 P1 PX4 doub 369 n n P1 O3 PX4 sing 370 n n P1 O4 PX4 sing 371 n n O3 C1 PX4 sing 372 n n C1 C2 PX4 sing 373 n n C1 H1 PX4 sing 374 n n C1 H2 PX4 sing 375 n n C2 N1 PX4 sing 376 n n C2 H3 PX4 sing 377 n n C2 H4 PX4 sing 378 n n N1 C3 PX4 sing 379 n n N1 C4 PX4 sing 380 n n N1 C5 PX4 sing 381 n n C3 H5 PX4 sing 382 n n C3 H6 PX4 sing 383 n n C3 H7 PX4 sing 384 n n C4 H8 PX4 sing 385 n n C4 H9 PX4 sing 386 n n C4 H10 PX4 sing 387 n n C5 H11 PX4 sing 388 n n C5 H12 PX4 sing 389 n n C5 H13 PX4 sing 390 n n O4 C6 PX4 sing 391 n n C6 C7 PX4 sing 392 n n C6 H14 PX4 sing 393 n n C6 H15 PX4 sing 394 n n C7 C8 PX4 sing 395 n n C7 O7 PX4 sing 396 n n C7 H16 PX4 sing 397 n n C8 O5 PX4 sing 398 n n C8 H17 PX4 sing 399 n n C8 H18 PX4 sing 400 n n O5 C9 PX4 sing 401 n n C9 O6 PX4 doub 402 n n C9 C10 PX4 sing 403 n n C10 C11 PX4 sing 404 n n C10 H19 PX4 sing 405 n n C10 H20 PX4 sing 406 n n C11 C12 PX4 sing 407 n n C11 H21 PX4 sing 408 n n C11 H22 PX4 sing 409 n n C12 C13 PX4 sing 410 n n C12 H23 PX4 sing 411 n n C12 H24 PX4 sing 412 n n C13 C14 PX4 sing 413 n n C13 H25 PX4 sing 414 n n C13 H26 PX4 sing 415 n n C14 C15 PX4 sing 416 n n C14 H27 PX4 sing 417 n n C14 H28 PX4 sing 418 n n C15 C16 PX4 sing 419 n n C15 H29 PX4 sing 420 n n C15 H30 PX4 sing 421 n n C16 C17 PX4 sing 422 n n C16 H31 PX4 sing 423 n n C16 H32 PX4 sing 424 n n C17 C18 PX4 sing 425 n n C17 H33 PX4 sing 426 n n C17 H34 PX4 sing 427 n n C18 C19 PX4 sing 428 n n C18 H35 PX4 sing 429 n n C18 H36 PX4 sing 430 n n C19 C20 PX4 sing 431 n n C19 H37 PX4 sing 432 n n C19 H38 PX4 sing 433 n n C20 C21 PX4 sing 434 n n C20 H39 PX4 sing 435 n n C20 H40 PX4 sing 436 n n C21 C22 PX4 sing 437 n n C21 H41 PX4 sing 438 n n C21 H42 PX4 sing 439 n n C22 H43 PX4 sing 440 n n C22 H44 PX4 sing 441 n n C22 H45 PX4 sing 442 n n O7 C23 PX4 sing 443 n n C23 O8 PX4 doub 444 n n C23 C24 PX4 sing 445 n n C24 C25 PX4 sing 446 n n C24 H46 PX4 sing 447 n n C24 H47 PX4 sing 448 n n C25 C26 PX4 sing 449 n n C25 H48 PX4 sing 450 n n C25 H49 PX4 sing 451 n n C26 C27 PX4 sing 452 n n C26 H50 PX4 sing 453 n n C26 H51 PX4 sing 454 n n C27 C28 PX4 sing 455 n n C27 H52 PX4 sing 456 n n C27 H53 PX4 sing 457 n n C28 C29 PX4 sing 458 n n C28 H54 PX4 sing 459 n n C28 H55 PX4 sing 460 n n C29 C30 PX4 sing 461 n n C29 H56 PX4 sing 462 n n C29 H57 PX4 sing 463 n n C30 C31 PX4 sing 464 n n C30 H58 PX4 sing 465 n n C30 H59 PX4 sing 466 n n C31 C32 PX4 sing 467 n n C31 H60 PX4 sing 468 n n C31 H61 PX4 sing 469 n n C32 C33 PX4 sing 470 n n C32 H62 PX4 sing 471 n n C32 H63 PX4 sing 472 n n C33 C34 PX4 sing 473 n n C33 H64 PX4 sing 474 n n C33 H65 PX4 sing 475 n n C34 C35 PX4 sing 476 n n C34 H66 PX4 sing 477 n n C34 H67 PX4 sing 478 n n C35 C36 PX4 sing 479 n n C35 H68 PX4 sing 480 n n C35 H69 PX4 sing 481 n n C36 H70 PX4 sing 482 n n C36 H71 PX4 sing 483 n n C36 H72 PX4 sing 484 n n # _atom_sites.entry_id 6MWA _atom_sites.fract_transf_matrix[1][1] 0.008015 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008015 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005269 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PX4 B 1 2301 1 PX4 PX4 . C 2 PX4 B 1 2302 2 PX4 PX4 . D 2 PX4 B 1 2303 3 PX4 PX4 . E 2 PX4 B 1 2304 4 PX4 PX4 . F 3 SO4 B 1 2305 1 SO4 SO4 . G 4 CPS B 1 2306 1 CPS 1N7 . H 4 CPS B 1 2307 2 CPS 1N7 . I 5 HOH B 1 2401 12 HOH HOH . I 5 HOH B 2 2402 33 HOH HOH . I 5 HOH B 3 2403 38 HOH HOH . I 5 HOH B 4 2404 34 HOH HOH . I 5 HOH B 5 2405 36 HOH HOH . I 5 HOH B 6 2406 6 HOH HOH . I 5 HOH B 7 2407 23 HOH HOH . I 5 HOH B 8 2408 3 HOH HOH . I 5 HOH B 9 2409 1 HOH HOH . I 5 HOH B 10 2410 8 HOH HOH . I 5 HOH B 11 2411 21 HOH HOH . I 5 HOH B 12 2412 11 HOH HOH . I 5 HOH B 13 2413 17 HOH HOH . I 5 HOH B 14 2414 13 HOH HOH . I 5 HOH B 15 2415 20 HOH HOH . I 5 HOH B 16 2416 19 HOH HOH . I 5 HOH B 17 2417 27 HOH HOH . I 5 HOH B 18 2418 37 HOH HOH . I 5 HOH B 19 2419 5 HOH HOH . I 5 HOH B 20 2420 26 HOH HOH . I 5 HOH B 21 2421 22 HOH HOH . I 5 HOH B 22 2422 30 HOH HOH . I 5 HOH B 23 2423 28 HOH HOH . I 5 HOH B 24 2424 31 HOH HOH . I 5 HOH B 25 2425 29 HOH HOH . I 5 HOH B 26 2426 15 HOH HOH . I 5 HOH B 27 2427 4 HOH HOH . I 5 HOH B 28 2428 10 HOH HOH . I 5 HOH B 29 2429 35 HOH HOH . I 5 HOH B 30 2430 9 HOH HOH . I 5 HOH B 31 2431 7 HOH HOH . I 5 HOH B 32 2432 16 HOH HOH . I 5 HOH B 33 2433 32 HOH HOH . I 5 HOH B 34 2434 25 HOH HOH . I 5 HOH B 35 2435 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PX4 . . . D 2 -34.883 -55.793 -88.3 1 127.6 ? O1 PX4 2303 B 1 HETATM 2 O O2 PX4 . . . D 2 -36.355 -57.748 -88.011 1 102.32 ? O2 PX4 2303 B 1 HETATM 3 P P1 PX4 . . . D 2 -36.258 -56.354 -88.586 1 119.87 ? P1 PX4 2303 B 1 HETATM 4 O O3 PX4 . . . D 2 -36.493 -56.391 -90.226 1 127.65 ? O3 PX4 2303 B 1 HETATM 5 C C1 PX4 . . . D 2 -37.198 -55.367 -90.879 1 133.83 ? C1 PX4 2303 B 1 HETATM 6 C C2 PX4 . . . D 2 -36.624 -55.163 -92.284 1 136.02 ? C2 PX4 2303 B 1 HETATM 7 N N1 PX4 . . . D 2 -37.607 -54.565 -93.177 1 139.32 ? N1 PX4 2303 B 1 HETATM 8 C C3 PX4 . . . D 2 -38.274 -53.455 -92.518 1 140.96 ? C3 PX4 2303 B 1 HETATM 9 C C4 PX4 . . . D 2 -36.938 -54.075 -94.373 1 144.58 ? C4 PX4 2303 B 1 HETATM 10 C C5 PX4 . . . D 2 -38.582 -55.568 -93.559 1 135.13 ? C5 PX4 2303 B 1 HETATM 11 O O4 PX4 . . . D 2 -37.376 -55.381 -87.86 1 111.05 ? O4 PX4 2303 B 1 HETATM 12 C C6 PX4 . . . D 2 -36.941 -54.493 -86.872 1 89.47 ? C6 PX4 2303 B 1 HETATM 13 C C7 PX4 . . . D 2 -37.505 -54.937 -85.528 1 75.83 ? C7 PX4 2303 B 1 HETATM 14 C C8 PX4 . . . D 2 -39.027 -54.855 -85.591 1 73.78 ? C8 PX4 2303 B 1 HETATM 15 O O5 PX4 . . . D 2 -39.546 -54.972 -84.301 1 72.12 ? O5 PX4 2303 B 1 HETATM 16 C C9 PX4 . . . D 2 -39.744 -56.283 -83.857 1 72.08 ? C9 PX4 2303 B 1 HETATM 17 O O6 PX4 . . . D 2 -39.702 -57.178 -84.629 1 69.73 ? O6 PX4 2303 B 1 HETATM 18 C C10 PX4 . . . D 2 -40.007 -56.555 -82.375 1 75.13 ? C10 PX4 2303 B 1 HETATM 19 C C11 PX4 . . . D 2 -38.753 -56.21 -81.571 1 78.67 ? C11 PX4 2303 B 1 HETATM 20 C C12 PX4 . . . D 2 -38.961 -56.439 -80.071 1 68.85 ? C12 PX4 2303 B 1 HETATM 21 C C13 PX4 . . . D 2 -38.731 -55.122 -79.33 1 75.35 ? C13 PX4 2303 B 1 HETATM 22 C C14 PX4 . . . D 2 -38.692 -55.36 -77.822 1 77.67 ? C14 PX4 2303 B 1 HETATM 23 C C15 PX4 . . . D 2 -39.596 -54.35 -77.119 1 80.77 ? C15 PX4 2303 B 1 HETATM 24 C C16 PX4 . . . D 2 -39.238 -54.295 -75.639 1 85.66 ? C16 PX4 2303 B 1 HETATM 25 C C17 PX4 . . . D 2 -40.426 -54.749 -74.799 1 91.68 ? C17 PX4 2303 B 1 HETATM 26 C C18 PX4 . . . D 2 -39.996 -54.837 -73.335 1 96.03 ? C18 PX4 2303 B 1 HETATM 27 C C19 PX4 . . . D 2 -40.104 -53.461 -72.677 1 101.69 ? C19 PX4 2303 B 1 HETATM 28 C C20 PX4 . . . D 2 -39.346 -53.46 -71.348 1 107 ? C20 PX4 2303 B 1 HETATM 29 C C21 PX4 . . . D 2 -39.943 -52.421 -70.4 1 101.85 ? C21 PX4 2303 B 1 HETATM 30 C C22 PX4 . . . D 2 -39.068 -52.298 -69.156 1 94.1 ? C22 PX4 2303 B 1 HETATM 31 O O7 PX4 . . . D 2 -37.154 -56.265 -85.261 1 79.26 ? O7 PX4 2303 B 1 HETATM 32 C C23 PX4 . . . D 2 -35.85 -56.491 -84.781 1 78.61 ? C23 PX4 2303 B 1 HETATM 33 O O8 PX4 . . . D 2 -35.065 -55.602 -84.744 1 84.94 ? O8 PX4 2303 B 1 HETATM 34 C C24 PX4 . . . D 2 -35.441 -57.892 -84.317 1 71.88 ? C24 PX4 2303 B 1 HETATM 35 C C25 PX4 . . . D 2 -34.718 -57.818 -82.967 1 80.21 ? C25 PX4 2303 B 1 HETATM 36 C C26 PX4 . . . D 2 -35.708 -57.96 -81.811 1 90 ? C26 PX4 2303 B 1 HETATM 37 C C27 PX4 . . . D 2 -35.026 -57.561 -80.5 1 98.37 ? C27 PX4 2303 B 1 HETATM 38 C C28 PX4 . . . D 2 -35.879 -57.98 -79.3 1 102.27 ? C28 PX4 2303 B 1 HETATM 39 C C29 PX4 . . . D 2 -35.046 -57.941 -78.017 1 101.67 ? C29 PX4 2303 B 1 HETATM 40 C C30 PX4 . . . D 2 -35.482 -56.759 -77.151 1 99.4 ? C30 PX4 2303 B 1 HETATM 41 C C31 PX4 . . . D 2 -35.379 -57.134 -75.674 1 103.31 ? C31 PX4 2303 B 1 HETATM 42 C C32 PX4 . . . D 2 -35.888 -55.975 -74.816 1 109.67 ? C32 PX4 2303 B 1 HETATM 43 C C33 PX4 . . . D 2 -34.711 -55.142 -74.307 1 112.53 ? C33 PX4 2303 B 1 HETATM 44 C C34 PX4 . . . D 2 -34.713 -55.121 -72.777 1 112.28 ? C34 PX4 2303 B 1 HETATM 45 C C35 PX4 . . . D 2 -35.518 -53.918 -72.286 1 116.88 ? C35 PX4 2303 B 1 HETATM 46 C C36 PX4 . . . D 2 -35.522 -53.875 -70.758 1 120.07 ? C36 PX4 2303 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 46 #