data_6MWB # _model_server_result.job_id fLnFAF_gcwYoVDjGtQNkmA _model_server_result.datetime_utc '2024-11-23 01:54:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mwb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2302}' # _entry.id 6MWB # _exptl.entry_id 6MWB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 678.94 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MWB _cell.length_a 123.849 _cell.length_b 123.849 _cell.length_c 190.006 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MWB _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -123.849 -123.849 0 3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -123.849 0 0 4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -123.849 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C36 H73 N O8 P 1' _chem_comp.formula_weight 678.94 _chem_comp.id PX4 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 PX4 sing 367 n n O1 H1P PX4 sing 368 n n O2 P1 PX4 doub 369 n n P1 O3 PX4 sing 370 n n P1 O4 PX4 sing 371 n n O3 C1 PX4 sing 372 n n C1 C2 PX4 sing 373 n n C1 H1 PX4 sing 374 n n C1 H2 PX4 sing 375 n n C2 N1 PX4 sing 376 n n C2 H3 PX4 sing 377 n n C2 H4 PX4 sing 378 n n N1 C3 PX4 sing 379 n n N1 C4 PX4 sing 380 n n N1 C5 PX4 sing 381 n n C3 H5 PX4 sing 382 n n C3 H6 PX4 sing 383 n n C3 H7 PX4 sing 384 n n C4 H8 PX4 sing 385 n n C4 H9 PX4 sing 386 n n C4 H10 PX4 sing 387 n n C5 H11 PX4 sing 388 n n C5 H12 PX4 sing 389 n n C5 H13 PX4 sing 390 n n O4 C6 PX4 sing 391 n n C6 C7 PX4 sing 392 n n C6 H14 PX4 sing 393 n n C6 H15 PX4 sing 394 n n C7 C8 PX4 sing 395 n n C7 O7 PX4 sing 396 n n C7 H16 PX4 sing 397 n n C8 O5 PX4 sing 398 n n C8 H17 PX4 sing 399 n n C8 H18 PX4 sing 400 n n O5 C9 PX4 sing 401 n n C9 O6 PX4 doub 402 n n C9 C10 PX4 sing 403 n n C10 C11 PX4 sing 404 n n C10 H19 PX4 sing 405 n n C10 H20 PX4 sing 406 n n C11 C12 PX4 sing 407 n n C11 H21 PX4 sing 408 n n C11 H22 PX4 sing 409 n n C12 C13 PX4 sing 410 n n C12 H23 PX4 sing 411 n n C12 H24 PX4 sing 412 n n C13 C14 PX4 sing 413 n n C13 H25 PX4 sing 414 n n C13 H26 PX4 sing 415 n n C14 C15 PX4 sing 416 n n C14 H27 PX4 sing 417 n n C14 H28 PX4 sing 418 n n C15 C16 PX4 sing 419 n n C15 H29 PX4 sing 420 n n C15 H30 PX4 sing 421 n n C16 C17 PX4 sing 422 n n C16 H31 PX4 sing 423 n n C16 H32 PX4 sing 424 n n C17 C18 PX4 sing 425 n n C17 H33 PX4 sing 426 n n C17 H34 PX4 sing 427 n n C18 C19 PX4 sing 428 n n C18 H35 PX4 sing 429 n n C18 H36 PX4 sing 430 n n C19 C20 PX4 sing 431 n n C19 H37 PX4 sing 432 n n C19 H38 PX4 sing 433 n n C20 C21 PX4 sing 434 n n C20 H39 PX4 sing 435 n n C20 H40 PX4 sing 436 n n C21 C22 PX4 sing 437 n n C21 H41 PX4 sing 438 n n C21 H42 PX4 sing 439 n n C22 H43 PX4 sing 440 n n C22 H44 PX4 sing 441 n n C22 H45 PX4 sing 442 n n O7 C23 PX4 sing 443 n n C23 O8 PX4 doub 444 n n C23 C24 PX4 sing 445 n n C24 C25 PX4 sing 446 n n C24 H46 PX4 sing 447 n n C24 H47 PX4 sing 448 n n C25 C26 PX4 sing 449 n n C25 H48 PX4 sing 450 n n C25 H49 PX4 sing 451 n n C26 C27 PX4 sing 452 n n C26 H50 PX4 sing 453 n n C26 H51 PX4 sing 454 n n C27 C28 PX4 sing 455 n n C27 H52 PX4 sing 456 n n C27 H53 PX4 sing 457 n n C28 C29 PX4 sing 458 n n C28 H54 PX4 sing 459 n n C28 H55 PX4 sing 460 n n C29 C30 PX4 sing 461 n n C29 H56 PX4 sing 462 n n C29 H57 PX4 sing 463 n n C30 C31 PX4 sing 464 n n C30 H58 PX4 sing 465 n n C30 H59 PX4 sing 466 n n C31 C32 PX4 sing 467 n n C31 H60 PX4 sing 468 n n C31 H61 PX4 sing 469 n n C32 C33 PX4 sing 470 n n C32 H62 PX4 sing 471 n n C32 H63 PX4 sing 472 n n C33 C34 PX4 sing 473 n n C33 H64 PX4 sing 474 n n C33 H65 PX4 sing 475 n n C34 C35 PX4 sing 476 n n C34 H66 PX4 sing 477 n n C34 H67 PX4 sing 478 n n C35 C36 PX4 sing 479 n n C35 H68 PX4 sing 480 n n C35 H69 PX4 sing 481 n n C36 H70 PX4 sing 482 n n C36 H71 PX4 sing 483 n n C36 H72 PX4 sing 484 n n # _atom_sites.entry_id 6MWB _atom_sites.fract_transf_matrix[1][1] 0.008074 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005263 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PX4 B 1 2301 1 PX4 PX4 . C 2 PX4 B 1 2302 2 PX4 PX4 . D 2 PX4 B 1 2303 3 PX4 PX4 . E 2 PX4 B 1 2304 4 PX4 PX4 . F 3 SO4 B 1 2305 1 SO4 SO4 . G 4 CPS B 1 2306 1 CPS CPS . H 4 CPS B 1 2307 2 CPS CPS . I 5 HOH B 1 2401 30 HOH HOH . I 5 HOH B 2 2402 27 HOH HOH . I 5 HOH B 3 2403 5 HOH HOH . I 5 HOH B 4 2404 7 HOH HOH . I 5 HOH B 5 2405 1 HOH HOH . I 5 HOH B 6 2406 4 HOH HOH . I 5 HOH B 7 2407 21 HOH HOH . I 5 HOH B 8 2408 15 HOH HOH . I 5 HOH B 9 2409 19 HOH HOH . I 5 HOH B 10 2410 9 HOH HOH . I 5 HOH B 11 2411 2 HOH HOH . I 5 HOH B 12 2412 12 HOH HOH . I 5 HOH B 13 2413 11 HOH HOH . I 5 HOH B 14 2414 26 HOH HOH . I 5 HOH B 15 2415 10 HOH HOH . I 5 HOH B 16 2416 6 HOH HOH . I 5 HOH B 17 2417 3 HOH HOH . I 5 HOH B 18 2418 8 HOH HOH . I 5 HOH B 19 2419 13 HOH HOH . I 5 HOH B 20 2420 18 HOH HOH . I 5 HOH B 21 2421 24 HOH HOH . I 5 HOH B 22 2422 28 HOH HOH . I 5 HOH B 23 2423 29 HOH HOH . I 5 HOH B 24 2424 23 HOH HOH . I 5 HOH B 25 2425 22 HOH HOH . I 5 HOH B 26 2426 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PX4 . . . C 2 -34.457 -55.95 -88.119 1 132.59 ? O1 PX4 2302 B 1 HETATM 2 O O2 PX4 . . . C 2 -36.37 -57.256 -88.945 1 124.96 ? O2 PX4 2302 B 1 HETATM 3 P P1 PX4 . . . C 2 -35.813 -55.846 -88.787 1 129.65 ? P1 PX4 2302 B 1 HETATM 4 O O3 PX4 . . . C 2 -35.641 -55.094 -90.183 1 131.74 ? O3 PX4 2302 B 1 HETATM 5 C C1 PX4 . . . C 2 -36.509 -55.299 -91.292 1 130.12 ? C1 PX4 2302 B 1 HETATM 6 C C2 PX4 . . . C 2 -35.908 -54.572 -92.525 1 129.51 ? C2 PX4 2302 B 1 HETATM 7 N N1 PX4 . . . C 2 -36.913 -54.264 -93.549 1 128.32 ? N1 PX4 2302 B 1 HETATM 8 C C3 PX4 . . . C 2 -37.653 -55.463 -93.86 1 124.32 ? C3 PX4 2302 B 1 HETATM 9 C C4 PX4 . . . C 2 -37.796 -53.258 -93.086 1 130.12 ? C4 PX4 2302 B 1 HETATM 10 C C5 PX4 . . . C 2 -36.238 -53.77 -94.767 1 130.54 ? C5 PX4 2302 B 1 HETATM 11 O O4 PX4 . . . C 2 -36.778 -54.979 -87.838 1 123.5 ? O4 PX4 2302 B 1 HETATM 12 C C6 PX4 . . . C 2 -36.177 -54.061 -86.911 1 111.15 ? C6 PX4 2302 B 1 HETATM 13 C C7 PX4 . . . C 2 -36.512 -54.458 -85.469 1 100.15 ? C7 PX4 2302 B 1 HETATM 14 C C8 PX4 . . . C 2 -37.896 -53.945 -85.134 1 95.04 ? C8 PX4 2302 B 1 HETATM 15 O O5 PX4 . . . C 2 -38.852 -54.984 -85.26 1 89.02 ? O5 PX4 2302 B 1 HETATM 16 C C9 PX4 . . . C 2 -39.114 -55.735 -84.064 1 78.67 ? C9 PX4 2302 B 1 HETATM 17 O O6 PX4 . . . C 2 -39.592 -56.829 -84.156 1 80.29 ? O6 PX4 2302 B 1 HETATM 18 C C10 PX4 . . . C 2 -38.773 -55.145 -82.668 1 85.08 ? C10 PX4 2302 B 1 HETATM 19 C C11 PX4 . . . C 2 -38.934 -56.218 -81.553 1 85.09 ? C11 PX4 2302 B 1 HETATM 20 C C12 PX4 . . . C 2 -38.138 -55.783 -80.26 1 76.1 ? C12 PX4 2302 B 1 HETATM 21 C C13 PX4 . . . C 2 -39.096 -55.129 -79.239 1 80.2 ? C13 PX4 2302 B 1 HETATM 22 C C14 PX4 . . . C 2 -38.357 -54.905 -77.91 1 85.5 ? C14 PX4 2302 B 1 HETATM 23 C C15 PX4 . . . C 2 -39.228 -54.019 -76.964 1 86.37 ? C15 PX4 2302 B 1 HETATM 24 C C16 PX4 . . . C 2 -38.891 -54.334 -75.471 1 88.02 ? C16 PX4 2302 B 1 HETATM 25 C C17 PX4 . . . C 2 -40.197 -54.538 -74.661 1 94.55 ? C17 PX4 2302 B 1 HETATM 26 C C18 PX4 . . . C 2 -39.854 -54.652 -73.149 1 99.9 ? C18 PX4 2302 B 1 HETATM 27 C C19 PX4 . . . C 2 -39.504 -53.298 -72.621 1 107.61 ? C19 PX4 2302 B 1 HETATM 28 C C20 PX4 . . . C 2 -39.376 -53.337 -71.085 1 109.4 ? C20 PX4 2302 B 1 HETATM 29 O O7 PX4 . . . C 2 -36.461 -55.878 -85.275 1 99.6 ? O7 PX4 2302 B 1 HETATM 30 C C23 PX4 . . . C 2 -35.214 -56.402 -84.791 1 95.63 ? C23 PX4 2302 B 1 HETATM 31 O O8 PX4 . . . C 2 -34.161 -55.879 -85.121 1 98.99 ? O8 PX4 2302 B 1 HETATM 32 C C24 PX4 . . . C 2 -35.176 -57.62 -83.873 1 87.88 ? C24 PX4 2302 B 1 HETATM 33 C C25 PX4 . . . C 2 -34.239 -57.35 -82.68 1 92.24 ? C25 PX4 2302 B 1 HETATM 34 C C26 PX4 . . . C 2 -34.863 -57.92 -81.361 1 96.71 ? C26 PX4 2302 B 1 HETATM 35 C C27 PX4 . . . C 2 -34.336 -57.11 -80.143 1 101.07 ? C27 PX4 2302 B 1 HETATM 36 C C28 PX4 . . . C 2 -35.144 -57.464 -78.882 1 103.29 ? C28 PX4 2302 B 1 HETATM 37 C C29 PX4 . . . C 2 -34.307 -57.189 -77.645 1 100.96 ? C29 PX4 2302 B 1 HETATM 38 C C30 PX4 . . . C 2 -35.217 -57.035 -76.405 1 99.69 ? C30 PX4 2302 B 1 HETATM 39 C C31 PX4 . . . C 2 -35.014 -55.629 -75.786 1 103.29 ? C31 PX4 2302 B 1 HETATM 40 C C32 PX4 . . . C 2 -35.308 -55.663 -74.258 1 102.41 ? C32 PX4 2302 B 1 HETATM 41 C C33 PX4 . . . C 2 -34.233 -54.821 -73.486 1 105.82 ? C33 PX4 2302 B 1 HETATM 42 C C34 PX4 . . . C 2 -34.423 -54.971 -71.966 1 106.98 ? C34 PX4 2302 B 1 HETATM 43 C C35 PX4 . . . C 2 -35.499 -53.971 -71.467 1 108.62 ? C35 PX4 2302 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #