data_6MWD
#
_model_server_result.job_id            goojV9t9JUiRoJPlQQkDtQ 
_model_server_result.datetime_utc      '2024-11-23 05:15:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mwd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":2301}' 
#
_entry.id    6MWD 
#
_exptl.entry_id    6MWD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              678.94 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MWD 
_cell.length_a            124.495 
_cell.length_b            124.495 
_cell.length_c            189.669 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MWD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -124.495 -124.495 0 
3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -124.495 0 0 
4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -124.495 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
_chem_comp.formula           'C36 H73 N O8 P 1' 
_chem_comp.formula_weight    678.94 
_chem_comp.id                PX4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 PX4 sing 373 n n 
O1 H1P PX4 sing 374 n n 
O2 P1 PX4 doub 375 n n 
P1 O3 PX4 sing 376 n n 
P1 O4 PX4 sing 377 n n 
O3 C1 PX4 sing 378 n n 
C1 C2 PX4 sing 379 n n 
C1 H1 PX4 sing 380 n n 
C1 H2 PX4 sing 381 n n 
C2 N1 PX4 sing 382 n n 
C2 H3 PX4 sing 383 n n 
C2 H4 PX4 sing 384 n n 
N1 C3 PX4 sing 385 n n 
N1 C4 PX4 sing 386 n n 
N1 C5 PX4 sing 387 n n 
C3 H5 PX4 sing 388 n n 
C3 H6 PX4 sing 389 n n 
C3 H7 PX4 sing 390 n n 
C4 H8 PX4 sing 391 n n 
C4 H9 PX4 sing 392 n n 
C4 H10 PX4 sing 393 n n 
C5 H11 PX4 sing 394 n n 
C5 H12 PX4 sing 395 n n 
C5 H13 PX4 sing 396 n n 
O4 C6 PX4 sing 397 n n 
C6 C7 PX4 sing 398 n n 
C6 H14 PX4 sing 399 n n 
C6 H15 PX4 sing 400 n n 
C7 C8 PX4 sing 401 n n 
C7 O7 PX4 sing 402 n n 
C7 H16 PX4 sing 403 n n 
C8 O5 PX4 sing 404 n n 
C8 H17 PX4 sing 405 n n 
C8 H18 PX4 sing 406 n n 
O5 C9 PX4 sing 407 n n 
C9 O6 PX4 doub 408 n n 
C9 C10 PX4 sing 409 n n 
C10 C11 PX4 sing 410 n n 
C10 H19 PX4 sing 411 n n 
C10 H20 PX4 sing 412 n n 
C11 C12 PX4 sing 413 n n 
C11 H21 PX4 sing 414 n n 
C11 H22 PX4 sing 415 n n 
C12 C13 PX4 sing 416 n n 
C12 H23 PX4 sing 417 n n 
C12 H24 PX4 sing 418 n n 
C13 C14 PX4 sing 419 n n 
C13 H25 PX4 sing 420 n n 
C13 H26 PX4 sing 421 n n 
C14 C15 PX4 sing 422 n n 
C14 H27 PX4 sing 423 n n 
C14 H28 PX4 sing 424 n n 
C15 C16 PX4 sing 425 n n 
C15 H29 PX4 sing 426 n n 
C15 H30 PX4 sing 427 n n 
C16 C17 PX4 sing 428 n n 
C16 H31 PX4 sing 429 n n 
C16 H32 PX4 sing 430 n n 
C17 C18 PX4 sing 431 n n 
C17 H33 PX4 sing 432 n n 
C17 H34 PX4 sing 433 n n 
C18 C19 PX4 sing 434 n n 
C18 H35 PX4 sing 435 n n 
C18 H36 PX4 sing 436 n n 
C19 C20 PX4 sing 437 n n 
C19 H37 PX4 sing 438 n n 
C19 H38 PX4 sing 439 n n 
C20 C21 PX4 sing 440 n n 
C20 H39 PX4 sing 441 n n 
C20 H40 PX4 sing 442 n n 
C21 C22 PX4 sing 443 n n 
C21 H41 PX4 sing 444 n n 
C21 H42 PX4 sing 445 n n 
C22 H43 PX4 sing 446 n n 
C22 H44 PX4 sing 447 n n 
C22 H45 PX4 sing 448 n n 
O7 C23 PX4 sing 449 n n 
C23 O8 PX4 doub 450 n n 
C23 C24 PX4 sing 451 n n 
C24 C25 PX4 sing 452 n n 
C24 H46 PX4 sing 453 n n 
C24 H47 PX4 sing 454 n n 
C25 C26 PX4 sing 455 n n 
C25 H48 PX4 sing 456 n n 
C25 H49 PX4 sing 457 n n 
C26 C27 PX4 sing 458 n n 
C26 H50 PX4 sing 459 n n 
C26 H51 PX4 sing 460 n n 
C27 C28 PX4 sing 461 n n 
C27 H52 PX4 sing 462 n n 
C27 H53 PX4 sing 463 n n 
C28 C29 PX4 sing 464 n n 
C28 H54 PX4 sing 465 n n 
C28 H55 PX4 sing 466 n n 
C29 C30 PX4 sing 467 n n 
C29 H56 PX4 sing 468 n n 
C29 H57 PX4 sing 469 n n 
C30 C31 PX4 sing 470 n n 
C30 H58 PX4 sing 471 n n 
C30 H59 PX4 sing 472 n n 
C31 C32 PX4 sing 473 n n 
C31 H60 PX4 sing 474 n n 
C31 H61 PX4 sing 475 n n 
C32 C33 PX4 sing 476 n n 
C32 H62 PX4 sing 477 n n 
C32 H63 PX4 sing 478 n n 
C33 C34 PX4 sing 479 n n 
C33 H64 PX4 sing 480 n n 
C33 H65 PX4 sing 481 n n 
C34 C35 PX4 sing 482 n n 
C34 H66 PX4 sing 483 n n 
C34 H67 PX4 sing 484 n n 
C35 C36 PX4 sing 485 n n 
C35 H68 PX4 sing 486 n n 
C35 H69 PX4 sing 487 n n 
C36 H70 PX4 sing 488 n n 
C36 H71 PX4 sing 489 n n 
C36 H72 PX4 sing 490 n n 
#
_atom_sites.entry_id                     6MWD 
_atom_sites.fract_transf_matrix[1][1]    0.008032 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008032 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005272 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PX4 B 1 2301 1 PX4 PX4 . 
C 2 PX4 B 1 2302 2 PX4 PX4 . 
D 2 PX4 B 1 2303 3 PX4 PX4 . 
E 2 PX4 B 1 2304 5 PX4 PX4 . 
F 3 ACT B 1 2305 1 ACT ACT . 
G 4 SO4 B 1 2306 1 SO4 SO4 . 
H 5 CPS B 1 2307 1 CPS CPS . 
I 5 CPS B 1 2308 2 CPS CPS . 
J 5 CPS B 1 2309 3 CPS CPS . 
K 6 HOH B 1 2401 17 HOH HOH . 
K 6 HOH B 2 2402 14 HOH HOH . 
K 6 HOH B 3 2403 13 HOH HOH . 
K 6 HOH B 4 2404 15 HOH HOH . 
K 6 HOH B 5 2405 4 HOH HOH . 
K 6 HOH B 6 2406 12 HOH HOH . 
K 6 HOH B 7 2407 18 HOH HOH . 
K 6 HOH B 8 2408 25 HOH HOH . 
K 6 HOH B 9 2409 24 HOH HOH . 
K 6 HOH B 10 2410 16 HOH HOH . 
K 6 HOH B 11 2411 19 HOH HOH . 
K 6 HOH B 12 2412 10 HOH HOH . 
K 6 HOH B 13 2413 7 HOH HOH . 
K 6 HOH B 14 2414 9 HOH HOH . 
K 6 HOH B 15 2415 27 HOH HOH . 
K 6 HOH B 16 2416 8 HOH HOH . 
K 6 HOH B 17 2417 21 HOH HOH . 
K 6 HOH B 18 2418 26 HOH HOH . 
K 6 HOH B 19 2419 11 HOH HOH . 
K 6 HOH B 20 2420 2 HOH HOH . 
K 6 HOH B 21 2421 5 HOH HOH . 
K 6 HOH B 22 2422 6 HOH HOH . 
K 6 HOH B 23 2423 1 HOH HOH . 
K 6 HOH B 24 2424 22 HOH HOH . 
K 6 HOH B 25 2425 28 HOH HOH . 
K 6 HOH B 26 2426 20 HOH HOH . 
K 6 HOH B 27 2427 30 HOH HOH . 
K 6 HOH B 28 2428 29 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 PX4 . . . B 2 -39.66 -69.593 -83.606 1 88.2 ? O1 PX4 2301 B 1 
HETATM 2 O O2 PX4 . . . B 2 -39.474 -67.079 -83.503 1 89.31 ? O2 PX4 2301 B 1 
HETATM 3 P P1 PX4 . . . B 2 -40.277 -68.304 -83.128 1 88.48 ? P1 PX4 2301 B 1 
HETATM 4 O O3 PX4 . . . B 2 -41.807 -68.19 -83.728 1 89.18 ? O3 PX4 2301 B 1 
HETATM 5 C C1 PX4 . . . B 2 -42.519 -66.997 -83.559 1 76.27 ? C1 PX4 2301 B 1 
HETATM 6 C C2 PX4 . . . B 2 -43.629 -66.922 -84.603 1 75.62 ? C2 PX4 2301 B 1 
HETATM 7 N N1 PX4 . . . B 2 -43.036 -66.721 -85.918 1 99.06 ? N1 PX4 2301 B 1 
HETATM 8 C C3 PX4 . . . B 2 -42.469 -67.969 -86.41 1 102.84 ? C3 PX4 2301 B 1 
HETATM 9 C C4 PX4 . . . B 2 -44.072 -66.295 -86.845 1 113.69 ? C4 PX4 2301 B 1 
HETATM 10 C C5 PX4 . . . B 2 -42 -65.7 -85.849 1 91.16 ? C5 PX4 2301 B 1 
HETATM 11 O O4 PX4 . . . B 2 -40.266 -68.309 -81.488 1 106.4 ? O4 PX4 2301 B 1 
HETATM 12 C C6 PX4 . . . B 2 -41.272 -68.944 -80.781 1 103.58 ? C6 PX4 2301 B 1 
HETATM 13 C C7 PX4 . . . B 2 -40.901 -68.664 -79.345 1 96.98 ? C7 PX4 2301 B 1 
HETATM 14 C C8 PX4 . . . B 2 -41.874 -67.623 -78.816 1 93.36 ? C8 PX4 2301 B 1 
HETATM 15 O O5 PX4 . . . B 2 -43.169 -68.05 -79.067 1 83.55 ? O5 PX4 2301 B 1 
HETATM 16 C C9 PX4 . . . B 2 -44.103 -67.43 -78.239 1 84.9 ? C9 PX4 2301 B 1 
HETATM 17 O O6 PX4 . . . B 2 -44.884 -66.668 -78.692 1 95.22 ? O6 PX4 2301 B 1 
HETATM 18 C C10 PX4 . . . B 2 -44.092 -67.722 -76.747 1 79.61 ? C10 PX4 2301 B 1 
HETATM 19 C C11 PX4 . . . B 2 -45.458 -67.443 -76.14 1 74.74 ? C11 PX4 2301 B 1 
HETATM 20 C C12 PX4 . . . B 2 -45.327 -67.377 -74.617 1 79.57 ? C12 PX4 2301 B 1 
HETATM 21 C C13 PX4 . . . B 2 -45.633 -68.731 -73.989 1 85.23 ? C13 PX4 2301 B 1 
HETATM 22 C C14 PX4 . . . B 2 -46.126 -68.544 -72.554 1 92.37 ? C14 PX4 2301 B 1 
HETATM 23 C C15 PX4 . . . B 2 -46.453 -69.904 -71.931 1 89.73 ? C15 PX4 2301 B 1 
HETATM 24 C C16 PX4 . . . B 2 -47.268 -69.705 -70.656 1 93.57 ? C16 PX4 2301 B 1 
HETATM 25 C C17 PX4 . . . B 2 -46.379 -69.102 -69.576 1 102.18 ? C17 PX4 2301 B 1 
HETATM 26 C C18 PX4 . . . B 2 -47.18 -68.94 -68.289 1 106.21 ? C18 PX4 2301 B 1 
HETATM 27 C C19 PX4 . . . B 2 -48.599 -68.504 -68.636 1 104.66 ? C19 PX4 2301 B 1 
HETATM 28 C C20 PX4 . . . B 2 -49.156 -67.669 -67.485 1 96.39 ? C20 PX4 2301 B 1 
HETATM 29 C C21 PX4 . . . B 2 -49.786 -68.6 -66.458 1 91.47 ? C21 PX4 2301 B 1 
HETATM 30 C C22 PX4 . . . B 2 -50.225 -67.788 -65.245 1 97.42 ? C22 PX4 2301 B 1 
HETATM 31 O O7 PX4 . . . B 2 -40.949 -69.84 -78.601 1 102.57 ? O7 PX4 2301 B 1 
HETATM 32 C C23 PX4 . . . B 2 -40.204 -69.73 -77.421 1 116.08 ? C23 PX4 2301 B 1 
HETATM 33 O O8 PX4 . . . B 2 -39.049 -69.994 -77.44 1 122.12 ? O8 PX4 2301 B 1 
HETATM 34 C C24 PX4 . . . B 2 -40.871 -69.263 -76.123 1 114.18 ? C24 PX4 2301 B 1 
HETATM 35 C C25 PX4 . . . B 2 -40.856 -70.392 -75.09 1 114.83 ? C25 PX4 2301 B 1 
HETATM 36 C C26 PX4 . . . B 2 -41.608 -69.953 -73.83 1 117.02 ? C26 PX4 2301 B 1 
HETATM 37 C C27 PX4 . . . B 2 -40.885 -68.779 -73.177 1 120.15 ? C27 PX4 2301 B 1 
HETATM 38 C C28 PX4 . . . B 2 -41.85 -68 -72.283 1 123.57 ? C28 PX4 2301 B 1 
HETATM 39 C C29 PX4 . . . B 2 -42.357 -68.882 -71.144 1 121.8 ? C29 PX4 2301 B 1 
HETATM 40 C C30 PX4 . . . B 2 -41.63 -68.533 -69.844 1 124.16 ? C30 PX4 2301 B 1 
HETATM 41 C C31 PX4 . . . B 2 -41.893 -67.077 -69.464 1 122.8 ? C31 PX4 2301 B 1 
HETATM 42 C C32 PX4 . . . B 2 -43.074 -66.998 -68.501 1 122.97 ? C32 PX4 2301 B 1 
HETATM 43 C C33 PX4 . . . B 2 -43.481 -65.536 -68.339 1 121.96 ? C33 PX4 2301 B 1 
HETATM 44 C C34 PX4 . . . B 2 -43.888 -65.273 -66.891 1 121.35 ? C34 PX4 2301 B 1 
HETATM 45 C C35 PX4 . . . B 2 -42.927 -64.26 -66.267 1 122.82 ? C35 PX4 2301 B 1 
HETATM 46 C C36 PX4 . . . B 2 -43.712 -63.258 -65.42 1 116.69 ? C36 PX4 2301 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           46 
#