data_6MWD
#
_model_server_result.job_id            HD6iGwqa3bAKGaa045lULQ 
_model_server_result.datetime_utc      '2024-11-23 05:18:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mwd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2303}' 
#
_entry.id    6MWD 
#
_exptl.entry_id    6MWD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              678.94 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MWD 
_cell.length_a            124.495 
_cell.length_b            124.495 
_cell.length_c            189.669 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MWD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -124.495 -124.495 0 
3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -124.495 0 0 
4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -124.495 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
_chem_comp.formula           'C36 H73 N O8 P 1' 
_chem_comp.formula_weight    678.94 
_chem_comp.id                PX4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 PX4 sing 373 n n 
O1 H1P PX4 sing 374 n n 
O2 P1 PX4 doub 375 n n 
P1 O3 PX4 sing 376 n n 
P1 O4 PX4 sing 377 n n 
O3 C1 PX4 sing 378 n n 
C1 C2 PX4 sing 379 n n 
C1 H1 PX4 sing 380 n n 
C1 H2 PX4 sing 381 n n 
C2 N1 PX4 sing 382 n n 
C2 H3 PX4 sing 383 n n 
C2 H4 PX4 sing 384 n n 
N1 C3 PX4 sing 385 n n 
N1 C4 PX4 sing 386 n n 
N1 C5 PX4 sing 387 n n 
C3 H5 PX4 sing 388 n n 
C3 H6 PX4 sing 389 n n 
C3 H7 PX4 sing 390 n n 
C4 H8 PX4 sing 391 n n 
C4 H9 PX4 sing 392 n n 
C4 H10 PX4 sing 393 n n 
C5 H11 PX4 sing 394 n n 
C5 H12 PX4 sing 395 n n 
C5 H13 PX4 sing 396 n n 
O4 C6 PX4 sing 397 n n 
C6 C7 PX4 sing 398 n n 
C6 H14 PX4 sing 399 n n 
C6 H15 PX4 sing 400 n n 
C7 C8 PX4 sing 401 n n 
C7 O7 PX4 sing 402 n n 
C7 H16 PX4 sing 403 n n 
C8 O5 PX4 sing 404 n n 
C8 H17 PX4 sing 405 n n 
C8 H18 PX4 sing 406 n n 
O5 C9 PX4 sing 407 n n 
C9 O6 PX4 doub 408 n n 
C9 C10 PX4 sing 409 n n 
C10 C11 PX4 sing 410 n n 
C10 H19 PX4 sing 411 n n 
C10 H20 PX4 sing 412 n n 
C11 C12 PX4 sing 413 n n 
C11 H21 PX4 sing 414 n n 
C11 H22 PX4 sing 415 n n 
C12 C13 PX4 sing 416 n n 
C12 H23 PX4 sing 417 n n 
C12 H24 PX4 sing 418 n n 
C13 C14 PX4 sing 419 n n 
C13 H25 PX4 sing 420 n n 
C13 H26 PX4 sing 421 n n 
C14 C15 PX4 sing 422 n n 
C14 H27 PX4 sing 423 n n 
C14 H28 PX4 sing 424 n n 
C15 C16 PX4 sing 425 n n 
C15 H29 PX4 sing 426 n n 
C15 H30 PX4 sing 427 n n 
C16 C17 PX4 sing 428 n n 
C16 H31 PX4 sing 429 n n 
C16 H32 PX4 sing 430 n n 
C17 C18 PX4 sing 431 n n 
C17 H33 PX4 sing 432 n n 
C17 H34 PX4 sing 433 n n 
C18 C19 PX4 sing 434 n n 
C18 H35 PX4 sing 435 n n 
C18 H36 PX4 sing 436 n n 
C19 C20 PX4 sing 437 n n 
C19 H37 PX4 sing 438 n n 
C19 H38 PX4 sing 439 n n 
C20 C21 PX4 sing 440 n n 
C20 H39 PX4 sing 441 n n 
C20 H40 PX4 sing 442 n n 
C21 C22 PX4 sing 443 n n 
C21 H41 PX4 sing 444 n n 
C21 H42 PX4 sing 445 n n 
C22 H43 PX4 sing 446 n n 
C22 H44 PX4 sing 447 n n 
C22 H45 PX4 sing 448 n n 
O7 C23 PX4 sing 449 n n 
C23 O8 PX4 doub 450 n n 
C23 C24 PX4 sing 451 n n 
C24 C25 PX4 sing 452 n n 
C24 H46 PX4 sing 453 n n 
C24 H47 PX4 sing 454 n n 
C25 C26 PX4 sing 455 n n 
C25 H48 PX4 sing 456 n n 
C25 H49 PX4 sing 457 n n 
C26 C27 PX4 sing 458 n n 
C26 H50 PX4 sing 459 n n 
C26 H51 PX4 sing 460 n n 
C27 C28 PX4 sing 461 n n 
C27 H52 PX4 sing 462 n n 
C27 H53 PX4 sing 463 n n 
C28 C29 PX4 sing 464 n n 
C28 H54 PX4 sing 465 n n 
C28 H55 PX4 sing 466 n n 
C29 C30 PX4 sing 467 n n 
C29 H56 PX4 sing 468 n n 
C29 H57 PX4 sing 469 n n 
C30 C31 PX4 sing 470 n n 
C30 H58 PX4 sing 471 n n 
C30 H59 PX4 sing 472 n n 
C31 C32 PX4 sing 473 n n 
C31 H60 PX4 sing 474 n n 
C31 H61 PX4 sing 475 n n 
C32 C33 PX4 sing 476 n n 
C32 H62 PX4 sing 477 n n 
C32 H63 PX4 sing 478 n n 
C33 C34 PX4 sing 479 n n 
C33 H64 PX4 sing 480 n n 
C33 H65 PX4 sing 481 n n 
C34 C35 PX4 sing 482 n n 
C34 H66 PX4 sing 483 n n 
C34 H67 PX4 sing 484 n n 
C35 C36 PX4 sing 485 n n 
C35 H68 PX4 sing 486 n n 
C35 H69 PX4 sing 487 n n 
C36 H70 PX4 sing 488 n n 
C36 H71 PX4 sing 489 n n 
C36 H72 PX4 sing 490 n n 
#
_atom_sites.entry_id                     6MWD 
_atom_sites.fract_transf_matrix[1][1]    0.008032 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008032 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005272 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PX4 B 1 2301 1 PX4 PX4 . 
C 2 PX4 B 1 2302 2 PX4 PX4 . 
D 2 PX4 B 1 2303 3 PX4 PX4 . 
E 2 PX4 B 1 2304 5 PX4 PX4 . 
F 3 ACT B 1 2305 1 ACT ACT . 
G 4 SO4 B 1 2306 1 SO4 SO4 . 
H 5 CPS B 1 2307 1 CPS CPS . 
I 5 CPS B 1 2308 2 CPS CPS . 
J 5 CPS B 1 2309 3 CPS CPS . 
K 6 HOH B 1 2401 17 HOH HOH . 
K 6 HOH B 2 2402 14 HOH HOH . 
K 6 HOH B 3 2403 13 HOH HOH . 
K 6 HOH B 4 2404 15 HOH HOH . 
K 6 HOH B 5 2405 4 HOH HOH . 
K 6 HOH B 6 2406 12 HOH HOH . 
K 6 HOH B 7 2407 18 HOH HOH . 
K 6 HOH B 8 2408 25 HOH HOH . 
K 6 HOH B 9 2409 24 HOH HOH . 
K 6 HOH B 10 2410 16 HOH HOH . 
K 6 HOH B 11 2411 19 HOH HOH . 
K 6 HOH B 12 2412 10 HOH HOH . 
K 6 HOH B 13 2413 7 HOH HOH . 
K 6 HOH B 14 2414 9 HOH HOH . 
K 6 HOH B 15 2415 27 HOH HOH . 
K 6 HOH B 16 2416 8 HOH HOH . 
K 6 HOH B 17 2417 21 HOH HOH . 
K 6 HOH B 18 2418 26 HOH HOH . 
K 6 HOH B 19 2419 11 HOH HOH . 
K 6 HOH B 20 2420 2 HOH HOH . 
K 6 HOH B 21 2421 5 HOH HOH . 
K 6 HOH B 22 2422 6 HOH HOH . 
K 6 HOH B 23 2423 1 HOH HOH . 
K 6 HOH B 24 2424 22 HOH HOH . 
K 6 HOH B 25 2425 28 HOH HOH . 
K 6 HOH B 26 2426 20 HOH HOH . 
K 6 HOH B 27 2427 30 HOH HOH . 
K 6 HOH B 28 2428 29 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 PX4 . . . D 2 -35.04 -57.079 -88.122 1 124.78 ? O1 PX4 2303 B 1 
HETATM 2 O O2 PX4 . . . D 2 -37.405 -56.986 -87.632 1 122.8 ? O2 PX4 2303 B 1 
HETATM 3 P P1 PX4 . . . D 2 -36.31 -56.328 -88.43 1 125.24 ? P1 PX4 2303 B 1 
HETATM 4 O O3 PX4 . . . D 2 -36.664 -56.461 -90.042 1 129.57 ? O3 PX4 2303 B 1 
HETATM 5 C C1 PX4 . . . D 2 -36.926 -55.345 -90.858 1 133.57 ? C1 PX4 2303 B 1 
HETATM 6 C C2 PX4 . . . D 2 -37.379 -55.849 -92.235 1 133.84 ? C2 PX4 2303 B 1 
HETATM 7 N N1 PX4 . . . D 2 -37.512 -54.778 -93.217 1 136.25 ? N1 PX4 2303 B 1 
HETATM 8 C C3 PX4 . . . D 2 -38.617 -55.084 -94.107 1 135.99 ? C3 PX4 2303 B 1 
HETATM 9 C C4 PX4 . . . D 2 -37.765 -53.501 -92.566 1 137.33 ? C4 PX4 2303 B 1 
HETATM 10 C C5 PX4 . . . D 2 -36.297 -54.691 -94.004 1 141.28 ? C5 PX4 2303 B 1 
HETATM 11 O O4 PX4 . . . D 2 -36.103 -54.747 -87.982 1 121.17 ? O4 PX4 2303 B 1 
HETATM 12 C C6 PX4 . . . D 2 -37.061 -54.057 -87.221 1 107.24 ? C6 PX4 2303 B 1 
HETATM 13 C C7 PX4 . . . D 2 -37.125 -54.56 -85.777 1 90.87 ? C7 PX4 2303 B 1 
HETATM 14 C C8 PX4 . . . D 2 -38.43 -55.32 -85.661 1 81.09 ? C8 PX4 2303 B 1 
HETATM 15 O O5 PX4 . . . D 2 -39.117 -54.872 -84.538 1 80.5 ? O5 PX4 2303 B 1 
HETATM 16 C C9 PX4 . . . D 2 -39.655 -55.921 -83.79 1 82.88 ? C9 PX4 2303 B 1 
HETATM 17 O O6 PX4 . . . D 2 -39.853 -56.971 -84.314 1 79.78 ? O6 PX4 2303 B 1 
HETATM 18 C C10 PX4 . . . D 2 -39.971 -55.697 -82.309 1 84.32 ? C10 PX4 2303 B 1 
HETATM 19 C C11 PX4 . . . D 2 -39.172 -56.643 -81.416 1 81.92 ? C11 PX4 2303 B 1 
HETATM 20 C C12 PX4 . . . D 2 -38.47 -55.906 -80.265 1 82.38 ? C12 PX4 2303 B 1 
HETATM 21 C C13 PX4 . . . D 2 -39.428 -55.491 -79.158 1 83.53 ? C13 PX4 2303 B 1 
HETATM 22 C C14 PX4 . . . D 2 -38.595 -55.014 -77.964 1 87.62 ? C14 PX4 2303 B 1 
HETATM 23 C C15 PX4 . . . D 2 -39.46 -54.24 -76.97 1 82.74 ? C15 PX4 2303 B 1 
HETATM 24 C C16 PX4 . . . D 2 -39.697 -55.095 -75.734 1 84.52 ? C16 PX4 2303 B 1 
HETATM 25 C C17 PX4 . . . D 2 -40.199 -54.191 -74.612 1 94.77 ? C17 PX4 2303 B 1 
HETATM 26 C C18 PX4 . . . D 2 -40.202 -54.934 -73.275 1 88.86 ? C18 PX4 2303 B 1 
HETATM 27 O O7 PX4 . . . D 2 -36.006 -55.358 -85.463 1 97.63 ? O7 PX4 2303 B 1 
HETATM 28 C C23 PX4 . . . D 2 -36.091 -56.411 -84.535 1 91.99 ? C23 PX4 2303 B 1 
HETATM 29 O O8 PX4 . . . D 2 -37.008 -56.518 -83.8 1 116.44 ? O8 PX4 2303 B 1 
HETATM 30 C C24 PX4 . . . D 2 -34.97 -57.442 -84.423 1 82.43 ? C24 PX4 2303 B 1 
HETATM 31 C C25 PX4 . . . D 2 -34.896 -57.961 -82.978 1 85.03 ? C25 PX4 2303 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           31 
#