data_6MWD
#
_model_server_result.job_id            eJ5aAvQoCgc4jc3fK65L7A 
_model_server_result.datetime_utc      '2024-11-26 21:50:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mwd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":2304}' 
#
_entry.id    6MWD 
#
_exptl.entry_id    6MWD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              678.94 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MWD 
_cell.length_a            124.495 
_cell.length_b            124.495 
_cell.length_c            189.669 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MWD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -124.495 -124.495 0 
3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -124.495 0 0 
4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -124.495 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
_chem_comp.formula           'C36 H73 N O8 P 1' 
_chem_comp.formula_weight    678.94 
_chem_comp.id                PX4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 PX4 sing 373 n n 
O1 H1P PX4 sing 374 n n 
O2 P1 PX4 doub 375 n n 
P1 O3 PX4 sing 376 n n 
P1 O4 PX4 sing 377 n n 
O3 C1 PX4 sing 378 n n 
C1 C2 PX4 sing 379 n n 
C1 H1 PX4 sing 380 n n 
C1 H2 PX4 sing 381 n n 
C2 N1 PX4 sing 382 n n 
C2 H3 PX4 sing 383 n n 
C2 H4 PX4 sing 384 n n 
N1 C3 PX4 sing 385 n n 
N1 C4 PX4 sing 386 n n 
N1 C5 PX4 sing 387 n n 
C3 H5 PX4 sing 388 n n 
C3 H6 PX4 sing 389 n n 
C3 H7 PX4 sing 390 n n 
C4 H8 PX4 sing 391 n n 
C4 H9 PX4 sing 392 n n 
C4 H10 PX4 sing 393 n n 
C5 H11 PX4 sing 394 n n 
C5 H12 PX4 sing 395 n n 
C5 H13 PX4 sing 396 n n 
O4 C6 PX4 sing 397 n n 
C6 C7 PX4 sing 398 n n 
C6 H14 PX4 sing 399 n n 
C6 H15 PX4 sing 400 n n 
C7 C8 PX4 sing 401 n n 
C7 O7 PX4 sing 402 n n 
C7 H16 PX4 sing 403 n n 
C8 O5 PX4 sing 404 n n 
C8 H17 PX4 sing 405 n n 
C8 H18 PX4 sing 406 n n 
O5 C9 PX4 sing 407 n n 
C9 O6 PX4 doub 408 n n 
C9 C10 PX4 sing 409 n n 
C10 C11 PX4 sing 410 n n 
C10 H19 PX4 sing 411 n n 
C10 H20 PX4 sing 412 n n 
C11 C12 PX4 sing 413 n n 
C11 H21 PX4 sing 414 n n 
C11 H22 PX4 sing 415 n n 
C12 C13 PX4 sing 416 n n 
C12 H23 PX4 sing 417 n n 
C12 H24 PX4 sing 418 n n 
C13 C14 PX4 sing 419 n n 
C13 H25 PX4 sing 420 n n 
C13 H26 PX4 sing 421 n n 
C14 C15 PX4 sing 422 n n 
C14 H27 PX4 sing 423 n n 
C14 H28 PX4 sing 424 n n 
C15 C16 PX4 sing 425 n n 
C15 H29 PX4 sing 426 n n 
C15 H30 PX4 sing 427 n n 
C16 C17 PX4 sing 428 n n 
C16 H31 PX4 sing 429 n n 
C16 H32 PX4 sing 430 n n 
C17 C18 PX4 sing 431 n n 
C17 H33 PX4 sing 432 n n 
C17 H34 PX4 sing 433 n n 
C18 C19 PX4 sing 434 n n 
C18 H35 PX4 sing 435 n n 
C18 H36 PX4 sing 436 n n 
C19 C20 PX4 sing 437 n n 
C19 H37 PX4 sing 438 n n 
C19 H38 PX4 sing 439 n n 
C20 C21 PX4 sing 440 n n 
C20 H39 PX4 sing 441 n n 
C20 H40 PX4 sing 442 n n 
C21 C22 PX4 sing 443 n n 
C21 H41 PX4 sing 444 n n 
C21 H42 PX4 sing 445 n n 
C22 H43 PX4 sing 446 n n 
C22 H44 PX4 sing 447 n n 
C22 H45 PX4 sing 448 n n 
O7 C23 PX4 sing 449 n n 
C23 O8 PX4 doub 450 n n 
C23 C24 PX4 sing 451 n n 
C24 C25 PX4 sing 452 n n 
C24 H46 PX4 sing 453 n n 
C24 H47 PX4 sing 454 n n 
C25 C26 PX4 sing 455 n n 
C25 H48 PX4 sing 456 n n 
C25 H49 PX4 sing 457 n n 
C26 C27 PX4 sing 458 n n 
C26 H50 PX4 sing 459 n n 
C26 H51 PX4 sing 460 n n 
C27 C28 PX4 sing 461 n n 
C27 H52 PX4 sing 462 n n 
C27 H53 PX4 sing 463 n n 
C28 C29 PX4 sing 464 n n 
C28 H54 PX4 sing 465 n n 
C28 H55 PX4 sing 466 n n 
C29 C30 PX4 sing 467 n n 
C29 H56 PX4 sing 468 n n 
C29 H57 PX4 sing 469 n n 
C30 C31 PX4 sing 470 n n 
C30 H58 PX4 sing 471 n n 
C30 H59 PX4 sing 472 n n 
C31 C32 PX4 sing 473 n n 
C31 H60 PX4 sing 474 n n 
C31 H61 PX4 sing 475 n n 
C32 C33 PX4 sing 476 n n 
C32 H62 PX4 sing 477 n n 
C32 H63 PX4 sing 478 n n 
C33 C34 PX4 sing 479 n n 
C33 H64 PX4 sing 480 n n 
C33 H65 PX4 sing 481 n n 
C34 C35 PX4 sing 482 n n 
C34 H66 PX4 sing 483 n n 
C34 H67 PX4 sing 484 n n 
C35 C36 PX4 sing 485 n n 
C35 H68 PX4 sing 486 n n 
C35 H69 PX4 sing 487 n n 
C36 H70 PX4 sing 488 n n 
C36 H71 PX4 sing 489 n n 
C36 H72 PX4 sing 490 n n 
#
_atom_sites.entry_id                     6MWD 
_atom_sites.fract_transf_matrix[1][1]    0.008032 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008032 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005272 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PX4 B 1 2301 1 PX4 PX4 . 
C 2 PX4 B 1 2302 2 PX4 PX4 . 
D 2 PX4 B 1 2303 3 PX4 PX4 . 
E 2 PX4 B 1 2304 5 PX4 PX4 . 
F 3 ACT B 1 2305 1 ACT ACT . 
G 4 SO4 B 1 2306 1 SO4 SO4 . 
H 5 CPS B 1 2307 1 CPS CPS . 
I 5 CPS B 1 2308 2 CPS CPS . 
J 5 CPS B 1 2309 3 CPS CPS . 
K 6 HOH B 1 2401 17 HOH HOH . 
K 6 HOH B 2 2402 14 HOH HOH . 
K 6 HOH B 3 2403 13 HOH HOH . 
K 6 HOH B 4 2404 15 HOH HOH . 
K 6 HOH B 5 2405 4 HOH HOH . 
K 6 HOH B 6 2406 12 HOH HOH . 
K 6 HOH B 7 2407 18 HOH HOH . 
K 6 HOH B 8 2408 25 HOH HOH . 
K 6 HOH B 9 2409 24 HOH HOH . 
K 6 HOH B 10 2410 16 HOH HOH . 
K 6 HOH B 11 2411 19 HOH HOH . 
K 6 HOH B 12 2412 10 HOH HOH . 
K 6 HOH B 13 2413 7 HOH HOH . 
K 6 HOH B 14 2414 9 HOH HOH . 
K 6 HOH B 15 2415 27 HOH HOH . 
K 6 HOH B 16 2416 8 HOH HOH . 
K 6 HOH B 17 2417 21 HOH HOH . 
K 6 HOH B 18 2418 26 HOH HOH . 
K 6 HOH B 19 2419 11 HOH HOH . 
K 6 HOH B 20 2420 2 HOH HOH . 
K 6 HOH B 21 2421 5 HOH HOH . 
K 6 HOH B 22 2422 6 HOH HOH . 
K 6 HOH B 23 2423 1 HOH HOH . 
K 6 HOH B 24 2424 22 HOH HOH . 
K 6 HOH B 25 2425 28 HOH HOH . 
K 6 HOH B 26 2426 20 HOH HOH . 
K 6 HOH B 27 2427 30 HOH HOH . 
K 6 HOH B 28 2428 29 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 PX4 . . . E 2 -71.731 -39.028 -52.69 1 152.48 ? O1 PX4 2304 B 1 
HETATM 2 O O2 PX4 . . . E 2 -71.911 -37.541 -54.639 1 162.62 ? O2 PX4 2304 B 1 
HETATM 3 P P1 PX4 . . . E 2 -71.085 -37.875 -53.422 1 155.48 ? P1 PX4 2304 B 1 
HETATM 4 O O3 PX4 . . . E 2 -71.012 -36.559 -52.431 1 156.14 ? O3 PX4 2304 B 1 
HETATM 5 O O4 PX4 . . . E 2 -69.554 -38.287 -53.888 1 145.33 ? O4 PX4 2304 B 1 
HETATM 6 C C6 PX4 . . . E 2 -69.132 -38.02 -55.193 1 132.29 ? C6 PX4 2304 B 1 
HETATM 7 C C7 PX4 . . . E 2 -69.854 -38.954 -56.155 1 122.48 ? C7 PX4 2304 B 1 
HETATM 8 C C8 PX4 . . . E 2 -69.413 -38.598 -57.571 1 126.11 ? C8 PX4 2304 B 1 
HETATM 9 O O5 PX4 . . . E 2 -70.268 -37.637 -58.122 1 121.68 ? O5 PX4 2304 B 1 
HETATM 10 C C9 PX4 . . . E 2 -71.023 -38.126 -59.194 1 111.68 ? C9 PX4 2304 B 1 
HETATM 11 O O6 PX4 . . . E 2 -71.504 -39.203 -59.126 1 119.29 ? O6 PX4 2304 B 1 
HETATM 12 C C10 PX4 . . . E 2 -71.235 -37.298 -60.456 1 99.45 ? C10 PX4 2304 B 1 
HETATM 13 C C11 PX4 . . . E 2 -72.232 -38.042 -61.34 1 96.54 ? C11 PX4 2304 B 1 
HETATM 14 C C12 PX4 . . . E 2 -72.295 -37.387 -62.715 1 96.63 ? C12 PX4 2304 B 1 
HETATM 15 C C13 PX4 . . . E 2 -73.573 -37.817 -63.433 1 98.56 ? C13 PX4 2304 B 1 
HETATM 16 C C14 PX4 . . . E 2 -73.615 -39.331 -63.607 1 97.6 ? C14 PX4 2304 B 1 
HETATM 17 C C15 PX4 . . . E 2 -74.36 -39.65 -64.904 1 95.34 ? C15 PX4 2304 B 1 
HETATM 18 C C16 PX4 . . . E 2 -74.48 -41.16 -65.136 1 88.61 ? C16 PX4 2304 B 1 
HETATM 19 C C17 PX4 . . . E 2 -73.165 -41.859 -64.818 1 82.97 ? C17 PX4 2304 B 1 
HETATM 20 C C18 PX4 . . . E 2 -72.859 -42.847 -65.936 1 93.93 ? C18 PX4 2304 B 1 
HETATM 21 C C19 PX4 . . . E 2 -73.366 -44.235 -65.565 1 92.76 ? C19 PX4 2304 B 1 
HETATM 22 C C20 PX4 . . . E 2 -72.157 -45.154 -65.428 1 88.31 ? C20 PX4 2304 B 1 
HETATM 23 C C21 PX4 . . . E 2 -72.637 -46.571 -65.136 1 91.54 ? C21 PX4 2304 B 1 
HETATM 24 C C22 PX4 . . . E 2 -73.669 -46.999 -66.173 1 87.1 ? C22 PX4 2304 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           24 
#