data_6MWG # _model_server_result.job_id rO1t9-cI9nixEWgURHgj9w _model_server_result.datetime_utc '2024-11-23 01:46:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mwg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2303}' # _entry.id 6MWG # _exptl.entry_id 6MWG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 678.94 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MWG _cell.length_a 124.175 _cell.length_b 124.175 _cell.length_c 189.868 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MWG _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -124.175 -124.175 0 3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -124.175 0 0 4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -124.175 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C36 H73 N O8 P 1' _chem_comp.formula_weight 678.94 _chem_comp.id PX4 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 PX4 sing 373 n n O1 H1P PX4 sing 374 n n O2 P1 PX4 doub 375 n n P1 O3 PX4 sing 376 n n P1 O4 PX4 sing 377 n n O3 C1 PX4 sing 378 n n C1 C2 PX4 sing 379 n n C1 H1 PX4 sing 380 n n C1 H2 PX4 sing 381 n n C2 N1 PX4 sing 382 n n C2 H3 PX4 sing 383 n n C2 H4 PX4 sing 384 n n N1 C3 PX4 sing 385 n n N1 C4 PX4 sing 386 n n N1 C5 PX4 sing 387 n n C3 H5 PX4 sing 388 n n C3 H6 PX4 sing 389 n n C3 H7 PX4 sing 390 n n C4 H8 PX4 sing 391 n n C4 H9 PX4 sing 392 n n C4 H10 PX4 sing 393 n n C5 H11 PX4 sing 394 n n C5 H12 PX4 sing 395 n n C5 H13 PX4 sing 396 n n O4 C6 PX4 sing 397 n n C6 C7 PX4 sing 398 n n C6 H14 PX4 sing 399 n n C6 H15 PX4 sing 400 n n C7 C8 PX4 sing 401 n n C7 O7 PX4 sing 402 n n C7 H16 PX4 sing 403 n n C8 O5 PX4 sing 404 n n C8 H17 PX4 sing 405 n n C8 H18 PX4 sing 406 n n O5 C9 PX4 sing 407 n n C9 O6 PX4 doub 408 n n C9 C10 PX4 sing 409 n n C10 C11 PX4 sing 410 n n C10 H19 PX4 sing 411 n n C10 H20 PX4 sing 412 n n C11 C12 PX4 sing 413 n n C11 H21 PX4 sing 414 n n C11 H22 PX4 sing 415 n n C12 C13 PX4 sing 416 n n C12 H23 PX4 sing 417 n n C12 H24 PX4 sing 418 n n C13 C14 PX4 sing 419 n n C13 H25 PX4 sing 420 n n C13 H26 PX4 sing 421 n n C14 C15 PX4 sing 422 n n C14 H27 PX4 sing 423 n n C14 H28 PX4 sing 424 n n C15 C16 PX4 sing 425 n n C15 H29 PX4 sing 426 n n C15 H30 PX4 sing 427 n n C16 C17 PX4 sing 428 n n C16 H31 PX4 sing 429 n n C16 H32 PX4 sing 430 n n C17 C18 PX4 sing 431 n n C17 H33 PX4 sing 432 n n C17 H34 PX4 sing 433 n n C18 C19 PX4 sing 434 n n C18 H35 PX4 sing 435 n n C18 H36 PX4 sing 436 n n C19 C20 PX4 sing 437 n n C19 H37 PX4 sing 438 n n C19 H38 PX4 sing 439 n n C20 C21 PX4 sing 440 n n C20 H39 PX4 sing 441 n n C20 H40 PX4 sing 442 n n C21 C22 PX4 sing 443 n n C21 H41 PX4 sing 444 n n C21 H42 PX4 sing 445 n n C22 H43 PX4 sing 446 n n C22 H44 PX4 sing 447 n n C22 H45 PX4 sing 448 n n O7 C23 PX4 sing 449 n n C23 O8 PX4 doub 450 n n C23 C24 PX4 sing 451 n n C24 C25 PX4 sing 452 n n C24 H46 PX4 sing 453 n n C24 H47 PX4 sing 454 n n C25 C26 PX4 sing 455 n n C25 H48 PX4 sing 456 n n C25 H49 PX4 sing 457 n n C26 C27 PX4 sing 458 n n C26 H50 PX4 sing 459 n n C26 H51 PX4 sing 460 n n C27 C28 PX4 sing 461 n n C27 H52 PX4 sing 462 n n C27 H53 PX4 sing 463 n n C28 C29 PX4 sing 464 n n C28 H54 PX4 sing 465 n n C28 H55 PX4 sing 466 n n C29 C30 PX4 sing 467 n n C29 H56 PX4 sing 468 n n C29 H57 PX4 sing 469 n n C30 C31 PX4 sing 470 n n C30 H58 PX4 sing 471 n n C30 H59 PX4 sing 472 n n C31 C32 PX4 sing 473 n n C31 H60 PX4 sing 474 n n C31 H61 PX4 sing 475 n n C32 C33 PX4 sing 476 n n C32 H62 PX4 sing 477 n n C32 H63 PX4 sing 478 n n C33 C34 PX4 sing 479 n n C33 H64 PX4 sing 480 n n C33 H65 PX4 sing 481 n n C34 C35 PX4 sing 482 n n C34 H66 PX4 sing 483 n n C34 H67 PX4 sing 484 n n C35 C36 PX4 sing 485 n n C35 H68 PX4 sing 486 n n C35 H69 PX4 sing 487 n n C36 H70 PX4 sing 488 n n C36 H71 PX4 sing 489 n n C36 H72 PX4 sing 490 n n # _atom_sites.entry_id 6MWG _atom_sites.fract_transf_matrix[1][1] 0.008053 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008053 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005267 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PX4 B 1 2301 1 PX4 PX4 . C 2 PX4 B 1 2302 2 PX4 PX4 . D 2 PX4 B 1 2303 3 PX4 PX4 . E 2 PX4 B 1 2304 4 PX4 PX4 . F 3 ACT B 1 2305 1 ACT ACT . G 4 CPS B 1 2306 1 CPS CPS . H 4 CPS B 1 2307 2 CPS CPS . I 5 HOH B 1 2401 18 HOH HOH . I 5 HOH B 2 2402 24 HOH HOH . I 5 HOH B 3 2403 21 HOH HOH . I 5 HOH B 4 2404 3 HOH HOH . I 5 HOH B 5 2405 13 HOH HOH . I 5 HOH B 6 2406 9 HOH HOH . I 5 HOH B 7 2407 11 HOH HOH . I 5 HOH B 8 2408 5 HOH HOH . I 5 HOH B 9 2409 20 HOH HOH . I 5 HOH B 10 2410 22 HOH HOH . I 5 HOH B 11 2411 16 HOH HOH . I 5 HOH B 12 2412 6 HOH HOH . I 5 HOH B 13 2413 25 HOH HOH . I 5 HOH B 14 2414 15 HOH HOH . I 5 HOH B 15 2415 8 HOH HOH . I 5 HOH B 16 2416 2 HOH HOH . I 5 HOH B 17 2417 4 HOH HOH . I 5 HOH B 18 2418 17 HOH HOH . I 5 HOH B 19 2419 10 HOH HOH . I 5 HOH B 20 2420 23 HOH HOH . I 5 HOH B 21 2421 12 HOH HOH . I 5 HOH B 22 2422 1 HOH HOH . I 5 HOH B 23 2423 19 HOH HOH . I 5 HOH B 24 2424 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PX4 . . . D 2 -34.78 -57.476 -88.212 1 126.92 ? O1 PX4 2303 B 1 HETATM 2 O O2 PX4 . . . D 2 -37.203 -57.35 -87.895 1 123.33 ? O2 PX4 2303 B 1 HETATM 3 P P1 PX4 . . . D 2 -36.02 -56.682 -88.553 1 120.2 ? P1 PX4 2303 B 1 HETATM 4 O O3 PX4 . . . D 2 -36.243 -56.682 -90.193 1 122.67 ? O3 PX4 2303 B 1 HETATM 5 C C1 PX4 . . . D 2 -36.546 -55.509 -90.898 1 121.72 ? C1 PX4 2303 B 1 HETATM 6 C C2 PX4 . . . D 2 -37.172 -55.911 -92.236 1 121.62 ? C2 PX4 2303 B 1 HETATM 7 N N1 PX4 . . . D 2 -36.999 -54.873 -93.241 1 122.64 ? N1 PX4 2303 B 1 HETATM 8 C C3 PX4 . . . D 2 -35.595 -54.742 -93.581 1 121.78 ? C3 PX4 2303 B 1 HETATM 9 C C4 PX4 . . . D 2 -37.735 -55.243 -94.438 1 122.15 ? C4 PX4 2303 B 1 HETATM 10 C C5 PX4 . . . D 2 -37.504 -53.61 -92.732 1 125.48 ? C5 PX4 2303 B 1 HETATM 11 O O4 PX4 . . . D 2 -35.863 -55.144 -87.974 1 113.63 ? O4 PX4 2303 B 1 HETATM 12 C C6 PX4 . . . D 2 -36.982 -54.499 -87.431 1 101.15 ? C6 PX4 2303 B 1 HETATM 13 C C7 PX4 . . . D 2 -37.144 -54.696 -85.917 1 83.78 ? C7 PX4 2303 B 1 HETATM 14 C C8 PX4 . . . D 2 -38.613 -54.414 -85.606 1 76.82 ? C8 PX4 2303 B 1 HETATM 15 O O5 PX4 . . . D 2 -38.898 -54.662 -84.26 1 77.09 ? O5 PX4 2303 B 1 HETATM 16 C C9 PX4 . . . D 2 -39.419 -55.923 -83.95 1 77.78 ? C9 PX4 2303 B 1 HETATM 17 O O6 PX4 . . . D 2 -39.583 -56.739 -84.79 1 80.66 ? O6 PX4 2303 B 1 HETATM 18 C C10 PX4 . . . D 2 -39.778 -56.254 -82.506 1 84.12 ? C10 PX4 2303 B 1 HETATM 19 C C11 PX4 . . . D 2 -38.656 -55.8 -81.577 1 87.08 ? C11 PX4 2303 B 1 HETATM 20 C C12 PX4 . . . D 2 -39.014 -56.125 -80.131 1 81.02 ? C12 PX4 2303 B 1 HETATM 21 C C13 PX4 . . . D 2 -38.09 -55.331 -79.219 1 84.73 ? C13 PX4 2303 B 1 HETATM 22 C C14 PX4 . . . D 2 -38.926 -54.506 -78.245 1 86.6 ? C14 PX4 2303 B 1 HETATM 23 C C15 PX4 . . . D 2 -38.675 -55.001 -76.823 1 87.79 ? C15 PX4 2303 B 1 HETATM 24 C C16 PX4 . . . D 2 -39.094 -53.918 -75.836 1 90.86 ? C16 PX4 2303 B 1 HETATM 25 C C17 PX4 . . . D 2 -40.205 -54.463 -74.948 1 92.85 ? C17 PX4 2303 B 1 HETATM 26 C C18 PX4 . . . D 2 -39.593 -54.985 -73.654 1 96.97 ? C18 PX4 2303 B 1 HETATM 27 C C19 PX4 . . . D 2 -40.252 -54.286 -72.468 1 101.48 ? C19 PX4 2303 B 1 HETATM 28 C C20 PX4 . . . D 2 -39.242 -53.404 -71.729 1 105.82 ? C20 PX4 2303 B 1 HETATM 29 C C21 PX4 . . . D 2 -39.856 -52.901 -70.418 1 102.42 ? C21 PX4 2303 B 1 HETATM 30 C C22 PX4 . . . D 2 -38.775 -52.307 -69.516 1 96.34 ? C22 PX4 2303 B 1 HETATM 31 O O7 PX4 . . . D 2 -36.872 -56.012 -85.516 1 87.72 ? O7 PX4 2303 B 1 HETATM 32 C C23 PX4 . . . D 2 -35.694 -56.258 -84.786 1 92.32 ? C23 PX4 2303 B 1 HETATM 33 O O8 PX4 . . . D 2 -34.842 -55.44 -84.719 1 99.38 ? O8 PX4 2303 B 1 HETATM 34 C C24 PX4 . . . D 2 -35.507 -57.6 -84.074 1 89.49 ? C24 PX4 2303 B 1 HETATM 35 C C25 PX4 . . . D 2 -34.388 -57.491 -83.036 1 91.79 ? C25 PX4 2303 B 1 HETATM 36 C C26 PX4 . . . D 2 -34.671 -58.399 -81.836 1 92.59 ? C26 PX4 2303 B 1 HETATM 37 C C27 PX4 . . . D 2 -35.069 -57.55 -80.627 1 96.32 ? C27 PX4 2303 B 1 HETATM 38 C C28 PX4 . . . D 2 -34.933 -58.363 -79.335 1 102.74 ? C28 PX4 2303 B 1 HETATM 39 C C29 PX4 . . . D 2 -35.177 -57.465 -78.122 1 103.13 ? C29 PX4 2303 B 1 HETATM 40 C C30 PX4 . . . D 2 -35.069 -58.295 -76.843 1 106.58 ? C30 PX4 2303 B 1 HETATM 41 C C31 PX4 . . . D 2 -35.571 -57.479 -75.654 1 106.9 ? C31 PX4 2303 B 1 HETATM 42 C C32 PX4 . . . D 2 -35.049 -56.049 -75.776 1 110.2 ? C32 PX4 2303 B 1 HETATM 43 C C33 PX4 . . . D 2 -35.429 -55.238 -74.536 1 111.79 ? C33 PX4 2303 B 1 HETATM 44 C C34 PX4 . . . D 2 -34.681 -55.773 -73.315 1 112.35 ? C34 PX4 2303 B 1 HETATM 45 C C35 PX4 . . . D 2 -34.286 -54.615 -72.399 1 113.3 ? C35 PX4 2303 B 1 HETATM 46 C C36 PX4 . . . D 2 -35.487 -54.193 -71.553 1 113.33 ? C36 PX4 2303 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 46 #