data_6MWR # _model_server_result.job_id 8UM8qUoRAWiYurcHfM0PWg _model_server_result.datetime_utc '2024-12-12 13:50:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mwr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":700}' # _entry.id 6MWR # _exptl.entry_id 6MWR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MWR _cell.length_a 88.39 _cell.length_b 88.39 _cell.length_c 257.15 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MWR _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 99 A CYS 98 1_555 A SG CYS 162 A CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 201 A CYS 200 1_555 A SG CYS 257 A CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 C SG CYS 23 C CYS 23 1_555 C SG CYS 97 C CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 D SG CYS 23 D CYS 26 1_555 D SG CYS 91 D CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A NZ LYS 44 A LYS 43 1_555 E C7 2LJ . A 2LJ 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.193 doub covale ? covale2 D ND2 ASN 134 D ASN 137 1_555 F C1 NAG . D NAG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 279 n n C1 O1 NAG sing 280 n n C1 O5 NAG sing 281 n n C1 H1 NAG sing 282 n n C2 C3 NAG sing 283 n n C2 N2 NAG sing 284 n n C2 H2 NAG sing 285 n n C3 C4 NAG sing 286 n n C3 O3 NAG sing 287 n n C3 H3 NAG sing 288 n n C4 C5 NAG sing 289 n n C4 O4 NAG sing 290 n n C4 H4 NAG sing 291 n n C5 C6 NAG sing 292 n n C5 O5 NAG sing 293 n n C5 H5 NAG sing 294 n n C6 O6 NAG sing 295 n n C6 H61 NAG sing 296 n n C6 H62 NAG sing 297 n n C7 C8 NAG sing 298 n n C7 N2 NAG sing 299 n n C7 O7 NAG doub 300 n n C8 H81 NAG sing 301 n n C8 H82 NAG sing 302 n n C8 H83 NAG sing 303 n n N2 HN2 NAG sing 304 n n O1 HO1 NAG sing 305 n n O3 HO3 NAG sing 306 n n O4 HO4 NAG sing 307 n n O6 HO6 NAG sing 308 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6MWR _atom_sites.fract_transf_matrix[1][1] 0.011313 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011313 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003889 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 2LJ A 1 600 600 2LJ 2LJ . F 6 NAG D 1 700 700 NAG NAG . G 7 HOH A 1 701 2 HOH HOH . G 7 HOH A 2 702 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 6 -42.604 71.167 19.839 1 145.12 ? C1 NAG 700 D 1 HETATM 2 C C2 NAG . . . F 6 -43.168 70.092 18.909 1 146.77 ? C2 NAG 700 D 1 HETATM 3 C C3 NAG . . . F 6 -44.6 69.802 19.364 1 150.05 ? C3 NAG 700 D 1 HETATM 4 C C4 NAG . . . F 6 -44.629 69.362 20.827 1 149.79 ? C4 NAG 700 D 1 HETATM 5 C C5 NAG . . . F 6 -43.906 70.381 21.708 1 148.03 ? C5 NAG 700 D 1 HETATM 6 C C6 NAG . . . F 6 -43.711 69.909 23.131 1 147.71 ? C6 NAG 700 D 1 HETATM 7 C C7 NAG . . . F 6 -42.183 70.184 16.645 1 145.62 ? C7 NAG 700 D 1 HETATM 8 C C8 NAG . . . F 6 -42.369 70.679 15.242 1 146.48 ? C8 NAG 700 D 1 HETATM 9 N N2 NAG . . . F 6 -43.148 70.518 17.518 1 147.21 ? N2 NAG 700 D 1 HETATM 10 O O3 NAG . . . F 6 -45.167 68.786 18.544 1 151.9 ? O3 NAG 700 D 1 HETATM 11 O O4 NAG . . . F 6 -45.978 69.223 21.26 1 152.84 ? O4 NAG 700 D 1 HETATM 12 O O5 NAG . . . F 6 -42.595 70.648 21.175 1 145.07 ? O5 NAG 700 D 1 HETATM 13 O O6 NAG . . . F 6 -43.077 70.901 23.928 1 146.58 ? O6 NAG 700 D 1 HETATM 14 O O7 NAG . . . F 6 -41.204 69.519 16.975 1 143.71 ? O7 NAG 700 D 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 14 #