data_6MWZ # _model_server_result.job_id xuA686IRkqiZq_VYLh1PwA _model_server_result.datetime_utc '2024-12-24 01:16:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mwz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 6MWZ # _exptl.entry_id 6MWZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.417 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[3-(methylsulfonyl)phenoxy]-N-[(1S,3S,5S)-2-oxobicyclo[3.1.0]hexan-3-yl]butanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.59 _cell.angle_gamma 90 _cell.entry_id 6MWZ _cell.length_a 44.953 _cell.length_b 72.363 _cell.length_c 51.872 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MWZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C17 H21 N O5 S' _chem_comp.formula_weight 351.417 _chem_comp.id K5M _chem_comp.mon_nstd_flag . _chem_comp.name 4-[3-(methylsulfonyl)phenoxy]-N-[(1S,3S,5S)-2-oxobicyclo[3.1.0]hexan-3-yl]butanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O17 S15 K5M doub 173 n n O18 S15 K5M doub 174 n n S15 C16 K5M sing 175 n n S15 C14 K5M sing 176 n n C13 C14 K5M doub 177 n y C13 C12 K5M sing 178 n y C14 C19 K5M sing 179 n y C12 C11 K5M doub 180 n y C19 C10 K5M doub 181 n y O01 C02 K5M doub 182 n n C23 C24 K5M sing 183 n n C23 C02 K5M sing 184 n n C23 C22 K5M sing 185 n n C24 C22 K5M sing 186 n n C11 C10 K5M sing 187 n y C10 O09 K5M sing 188 n n C02 C03 K5M sing 189 n n C22 C21 K5M sing 190 n n C08 O09 K5M sing 191 n n C08 C07 K5M sing 192 n n C03 C21 K5M sing 193 n n C03 N04 K5M sing 194 n n O20 C05 K5M doub 195 n n C07 C06 K5M sing 196 n n N04 C05 K5M sing 197 n n C05 C06 K5M sing 198 n n C13 H131 K5M sing 199 n n C21 H212 K5M sing 200 n n C21 H211 K5M sing 201 n n C22 H221 K5M sing 202 n n C24 H241 K5M sing 203 n n C24 H242 K5M sing 204 n n C03 H031 K5M sing 205 n n C06 H061 K5M sing 206 n n C06 H062 K5M sing 207 n n C07 H071 K5M sing 208 n n C07 H072 K5M sing 209 n n C08 H081 K5M sing 210 n n C08 H082 K5M sing 211 n n C11 H111 K5M sing 212 n n C12 H121 K5M sing 213 n n C16 H161 K5M sing 214 n n C16 H163 K5M sing 215 n n C16 H162 K5M sing 216 n n C19 H191 K5M sing 217 n n C23 H231 K5M sing 218 n n N04 H041 K5M sing 219 n n # _atom_sites.entry_id 6MWZ _atom_sites.fract_transf_matrix[1][1] 0.022245 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001007 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013819 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019298 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 K5M A 1 301 201 K5M LIG . E 3 K5M B 1 301 201 K5M LIG . F 4 HOH A 1 401 28 HOH HOH . F 4 HOH A 2 402 9 HOH HOH . F 4 HOH A 3 403 11 HOH HOH . F 4 HOH A 4 404 106 HOH HOH . F 4 HOH A 5 405 58 HOH HOH . F 4 HOH A 6 406 5 HOH HOH . F 4 HOH A 7 407 76 HOH HOH . F 4 HOH A 8 408 82 HOH HOH . F 4 HOH A 9 409 24 HOH HOH . F 4 HOH A 10 410 41 HOH HOH . F 4 HOH A 11 411 62 HOH HOH . F 4 HOH A 12 412 34 HOH HOH . F 4 HOH A 13 413 45 HOH HOH . F 4 HOH A 14 414 54 HOH HOH . F 4 HOH A 15 415 18 HOH HOH . F 4 HOH A 16 416 77 HOH HOH . F 4 HOH A 17 417 63 HOH HOH . F 4 HOH A 18 418 115 HOH HOH . F 4 HOH A 19 419 29 HOH HOH . F 4 HOH A 20 420 57 HOH HOH . F 4 HOH A 21 421 114 HOH HOH . F 4 HOH A 22 422 89 HOH HOH . F 4 HOH A 23 423 46 HOH HOH . F 4 HOH A 24 424 125 HOH HOH . F 4 HOH A 25 425 65 HOH HOH . F 4 HOH A 26 426 33 HOH HOH . F 4 HOH A 27 427 8 HOH HOH . F 4 HOH A 28 428 79 HOH HOH . F 4 HOH A 29 429 38 HOH HOH . F 4 HOH A 30 430 93 HOH HOH . F 4 HOH A 31 431 105 HOH HOH . F 4 HOH A 32 432 23 HOH HOH . F 4 HOH A 33 433 42 HOH HOH . F 4 HOH A 34 434 64 HOH HOH . F 4 HOH A 35 435 97 HOH HOH . F 4 HOH A 36 436 49 HOH HOH . F 4 HOH A 37 437 85 HOH HOH . F 4 HOH A 38 438 123 HOH HOH . F 4 HOH A 39 439 108 HOH HOH . G 4 HOH B 1 401 117 HOH HOH . G 4 HOH B 2 402 3 HOH HOH . G 4 HOH B 3 403 66 HOH HOH . G 4 HOH B 4 404 60 HOH HOH . G 4 HOH B 5 405 6 HOH HOH . G 4 HOH B 6 406 92 HOH HOH . G 4 HOH B 7 407 122 HOH HOH . G 4 HOH B 8 408 86 HOH HOH . G 4 HOH B 9 409 21 HOH HOH . G 4 HOH B 10 410 52 HOH HOH . G 4 HOH B 11 411 51 HOH HOH . G 4 HOH B 12 412 26 HOH HOH . G 4 HOH B 13 413 53 HOH HOH . G 4 HOH B 14 414 22 HOH HOH . G 4 HOH B 15 415 118 HOH HOH . G 4 HOH B 16 416 14 HOH HOH . G 4 HOH B 17 417 90 HOH HOH . G 4 HOH B 18 418 67 HOH HOH . G 4 HOH B 19 419 35 HOH HOH . G 4 HOH B 20 420 126 HOH HOH . G 4 HOH B 21 421 12 HOH HOH . G 4 HOH B 22 422 13 HOH HOH . G 4 HOH B 23 423 74 HOH HOH . G 4 HOH B 24 424 19 HOH HOH . G 4 HOH B 25 425 56 HOH HOH . G 4 HOH B 26 426 32 HOH HOH . G 4 HOH B 27 427 44 HOH HOH . G 4 HOH B 28 428 110 HOH HOH . G 4 HOH B 29 429 48 HOH HOH . G 4 HOH B 30 430 43 HOH HOH . G 4 HOH B 31 431 101 HOH HOH . G 4 HOH B 32 432 113 HOH HOH . G 4 HOH B 33 433 121 HOH HOH . G 4 HOH B 34 434 102 HOH HOH . G 4 HOH B 35 435 112 HOH HOH . G 4 HOH B 36 436 59 HOH HOH . H 4 HOH M 1 401 75 HOH HOH . H 4 HOH M 2 402 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 K5M . . . D 3 12.228 -22.563 9.398 1 54.7 ? C10 K5M 301 A 1 HETATM 2 C C13 K5M . . . D 3 10.925 -23.777 7.196 1 54.5 ? C13 K5M 301 A 1 HETATM 3 C C21 K5M . . . D 3 20.736 -19.739 11.202 1 26.9 ? C21 K5M 301 A 1 HETATM 4 C C22 K5M . . . D 3 21.488 -19.296 10.094 1 25.9 ? C22 K5M 301 A 1 HETATM 5 C C24 K5M . . . D 3 21.727 -17.954 9.357 1 28.97 ? C24 K5M 301 A 1 HETATM 6 C C02 K5M . . . D 3 19.112 -19.275 9.478 1 27.17 ? C02 K5M 301 A 1 HETATM 7 C C03 K5M . . . D 3 19.205 -19.195 10.868 1 24.85 ? C03 K5M 301 A 1 HETATM 8 C C05 K5M . . . D 3 16.795 -19.439 11.676 1 28.97 ? C05 K5M 301 A 1 HETATM 9 C C06 K5M . . . D 3 15.694 -20.35 12.274 1 36.42 ? C06 K5M 301 A 1 HETATM 10 C C07 K5M . . . D 3 14.348 -20.255 11.48 1 50.08 ? C07 K5M 301 A 1 HETATM 11 C C08 K5M . . . D 3 14.106 -21.226 10.277 1 46.59 ? C08 K5M 301 A 1 HETATM 12 C C11 K5M . . . D 3 12.008 -23.949 9.359 1 56.68 ? C11 K5M 301 A 1 HETATM 13 C C12 K5M . . . D 3 11.371 -24.556 8.264 1 55.74 ? C12 K5M 301 A 1 HETATM 14 C C14 K5M . . . D 3 11.134 -22.398 7.244 1 57.61 ? C14 K5M 301 A 1 HETATM 15 C C16 K5M . . . D 3 11.124 -19.591 6.216 1 57.61 ? C16 K5M 301 A 1 HETATM 16 C C19 K5M . . . D 3 11.771 -21.799 8.333 1 52.4 ? C19 K5M 301 A 1 HETATM 17 C C23 K5M . . . D 3 20.551 -18.871 8.921 1 29.04 ? C23 K5M 301 A 1 HETATM 18 N N04 K5M . . . D 3 18.146 -20.003 11.483 1 28.38 ? N04 K5M 301 A 1 HETATM 19 O O01 K5M . . . D 3 18.242 -19.561 8.732 1 26.09 ? O01 K5M 301 A 1 HETATM 20 O O09 K5M . . . D 3 12.875 -21.924 10.502 1 56.73 ? O09 K5M 301 A 1 HETATM 21 O O17 K5M . . . D 3 10.956 -21.781 4.576 1 66.84 ? O17 K5M 301 A 1 HETATM 22 O O18 K5M . . . D 3 9.1 -21.326 5.815 1 64.19 ? O18 K5M 301 A 1 HETATM 23 O O20 K5M . . . D 3 16.56 -18.311 11.36 1 27.29 ? O20 K5M 301 A 1 HETATM 24 S S15 K5M . . . D 3 10.565 -21.302 5.905 1 69.03 ? S15 K5M 301 A 1 HETATM 25 H H131 K5M . . . D 3 10.497 -24.168 6.469 1 65.4 ? H131 K5M 301 A 1 HETATM 26 H H212 K5M . . . D 3 21.069 -19.343 12.023 1 32.27 ? H212 K5M 301 A 1 HETATM 27 H H211 K5M . . . D 3 20.751 -20.707 11.262 1 32.27 ? H211 K5M 301 A 1 HETATM 28 H H221 K5M . . . D 3 21.94 -20.029 9.647 1 31.09 ? H221 K5M 301 A 1 HETATM 29 H H241 K5M . . . D 3 21.475 -17.156 9.848 1 34.77 ? H241 K5M 301 A 1 HETATM 30 H H242 K5M . . . D 3 22.488 -17.936 8.756 1 34.77 ? H242 K5M 301 A 1 HETATM 31 H H031 K5M . . . D 3 19.118 -18.287 11.197 1 29.82 ? H031 K5M 301 A 1 HETATM 32 H H061 K5M . . . D 3 16.004 -21.269 12.258 1 43.71 ? H061 K5M 301 A 1 HETATM 33 H H062 K5M . . . D 3 15.535 -20.088 13.194 1 43.71 ? H062 K5M 301 A 1 HETATM 34 H H071 K5M . . . D 3 13.63 -20.402 12.115 1 60.09 ? H071 K5M 301 A 1 HETATM 35 H H072 K5M . . . D 3 14.283 -19.351 11.135 1 60.09 ? H072 K5M 301 A 1 HETATM 36 H H081 K5M . . . D 3 14.048 -20.718 9.453 1 55.91 ? H081 K5M 301 A 1 HETATM 37 H H082 K5M . . . D 3 14.836 -21.862 10.218 1 55.91 ? H082 K5M 301 A 1 HETATM 38 H H111 K5M . . . D 3 12.289 -24.475 10.072 1 68.01 ? H111 K5M 301 A 1 HETATM 39 H H121 K5M . . . D 3 11.248 -25.477 8.251 1 66.89 ? H121 K5M 301 A 1 HETATM 40 H H161 K5M . . . D 3 10.54 -18.97 5.753 1 69.13 ? H161 K5M 301 A 1 HETATM 41 H H163 K5M . . . D 3 12.032 -19.483 5.891 1 69.13 ? H163 K5M 301 A 1 HETATM 42 H H162 K5M . . . D 3 11.098 -19.41 7.169 1 69.13 ? H162 K5M 301 A 1 HETATM 43 H H191 K5M . . . D 3 11.89 -20.877 8.344 1 62.89 ? H191 K5M 301 A 1 HETATM 44 H H231 K5M . . . D 3 20.733 -19.294 8.068 1 34.85 ? H231 K5M 301 A 1 HETATM 45 H H041 K5M . . . D 3 18.312 -20.809 11.733 1 34.06 ? H041 K5M 301 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 45 #