data_6MWZ # _model_server_result.job_id N4k-BDI_TI5XPfevT90wjg _model_server_result.datetime_utc '2024-12-24 01:02:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mwz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 6MWZ # _exptl.entry_id 6MWZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.417 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[3-(methylsulfonyl)phenoxy]-N-[(1S,3S,5S)-2-oxobicyclo[3.1.0]hexan-3-yl]butanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.59 _cell.angle_gamma 90 _cell.entry_id 6MWZ _cell.length_a 44.953 _cell.length_b 72.363 _cell.length_c 51.872 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MWZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C17 H21 N O5 S' _chem_comp.formula_weight 351.417 _chem_comp.id K5M _chem_comp.mon_nstd_flag . _chem_comp.name 4-[3-(methylsulfonyl)phenoxy]-N-[(1S,3S,5S)-2-oxobicyclo[3.1.0]hexan-3-yl]butanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O17 S15 K5M doub 173 n n O18 S15 K5M doub 174 n n S15 C16 K5M sing 175 n n S15 C14 K5M sing 176 n n C13 C14 K5M doub 177 n y C13 C12 K5M sing 178 n y C14 C19 K5M sing 179 n y C12 C11 K5M doub 180 n y C19 C10 K5M doub 181 n y O01 C02 K5M doub 182 n n C23 C24 K5M sing 183 n n C23 C02 K5M sing 184 n n C23 C22 K5M sing 185 n n C24 C22 K5M sing 186 n n C11 C10 K5M sing 187 n y C10 O09 K5M sing 188 n n C02 C03 K5M sing 189 n n C22 C21 K5M sing 190 n n C08 O09 K5M sing 191 n n C08 C07 K5M sing 192 n n C03 C21 K5M sing 193 n n C03 N04 K5M sing 194 n n O20 C05 K5M doub 195 n n C07 C06 K5M sing 196 n n N04 C05 K5M sing 197 n n C05 C06 K5M sing 198 n n C13 H131 K5M sing 199 n n C21 H212 K5M sing 200 n n C21 H211 K5M sing 201 n n C22 H221 K5M sing 202 n n C24 H241 K5M sing 203 n n C24 H242 K5M sing 204 n n C03 H031 K5M sing 205 n n C06 H061 K5M sing 206 n n C06 H062 K5M sing 207 n n C07 H071 K5M sing 208 n n C07 H072 K5M sing 209 n n C08 H081 K5M sing 210 n n C08 H082 K5M sing 211 n n C11 H111 K5M sing 212 n n C12 H121 K5M sing 213 n n C16 H161 K5M sing 214 n n C16 H163 K5M sing 215 n n C16 H162 K5M sing 216 n n C19 H191 K5M sing 217 n n C23 H231 K5M sing 218 n n N04 H041 K5M sing 219 n n # _atom_sites.entry_id 6MWZ _atom_sites.fract_transf_matrix[1][1] 0.022245 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001007 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013819 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019298 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 K5M A 1 301 201 K5M LIG . E 3 K5M B 1 301 201 K5M LIG . F 4 HOH A 1 401 28 HOH HOH . F 4 HOH A 2 402 9 HOH HOH . F 4 HOH A 3 403 11 HOH HOH . F 4 HOH A 4 404 106 HOH HOH . F 4 HOH A 5 405 58 HOH HOH . F 4 HOH A 6 406 5 HOH HOH . F 4 HOH A 7 407 76 HOH HOH . F 4 HOH A 8 408 82 HOH HOH . F 4 HOH A 9 409 24 HOH HOH . F 4 HOH A 10 410 41 HOH HOH . F 4 HOH A 11 411 62 HOH HOH . F 4 HOH A 12 412 34 HOH HOH . F 4 HOH A 13 413 45 HOH HOH . F 4 HOH A 14 414 54 HOH HOH . F 4 HOH A 15 415 18 HOH HOH . F 4 HOH A 16 416 77 HOH HOH . F 4 HOH A 17 417 63 HOH HOH . F 4 HOH A 18 418 115 HOH HOH . F 4 HOH A 19 419 29 HOH HOH . F 4 HOH A 20 420 57 HOH HOH . F 4 HOH A 21 421 114 HOH HOH . F 4 HOH A 22 422 89 HOH HOH . F 4 HOH A 23 423 46 HOH HOH . F 4 HOH A 24 424 125 HOH HOH . F 4 HOH A 25 425 65 HOH HOH . F 4 HOH A 26 426 33 HOH HOH . F 4 HOH A 27 427 8 HOH HOH . F 4 HOH A 28 428 79 HOH HOH . F 4 HOH A 29 429 38 HOH HOH . F 4 HOH A 30 430 93 HOH HOH . F 4 HOH A 31 431 105 HOH HOH . F 4 HOH A 32 432 23 HOH HOH . F 4 HOH A 33 433 42 HOH HOH . F 4 HOH A 34 434 64 HOH HOH . F 4 HOH A 35 435 97 HOH HOH . F 4 HOH A 36 436 49 HOH HOH . F 4 HOH A 37 437 85 HOH HOH . F 4 HOH A 38 438 123 HOH HOH . F 4 HOH A 39 439 108 HOH HOH . G 4 HOH B 1 401 117 HOH HOH . G 4 HOH B 2 402 3 HOH HOH . G 4 HOH B 3 403 66 HOH HOH . G 4 HOH B 4 404 60 HOH HOH . G 4 HOH B 5 405 6 HOH HOH . G 4 HOH B 6 406 92 HOH HOH . G 4 HOH B 7 407 122 HOH HOH . G 4 HOH B 8 408 86 HOH HOH . G 4 HOH B 9 409 21 HOH HOH . G 4 HOH B 10 410 52 HOH HOH . G 4 HOH B 11 411 51 HOH HOH . G 4 HOH B 12 412 26 HOH HOH . G 4 HOH B 13 413 53 HOH HOH . G 4 HOH B 14 414 22 HOH HOH . G 4 HOH B 15 415 118 HOH HOH . G 4 HOH B 16 416 14 HOH HOH . G 4 HOH B 17 417 90 HOH HOH . G 4 HOH B 18 418 67 HOH HOH . G 4 HOH B 19 419 35 HOH HOH . G 4 HOH B 20 420 126 HOH HOH . G 4 HOH B 21 421 12 HOH HOH . G 4 HOH B 22 422 13 HOH HOH . G 4 HOH B 23 423 74 HOH HOH . G 4 HOH B 24 424 19 HOH HOH . G 4 HOH B 25 425 56 HOH HOH . G 4 HOH B 26 426 32 HOH HOH . G 4 HOH B 27 427 44 HOH HOH . G 4 HOH B 28 428 110 HOH HOH . G 4 HOH B 29 429 48 HOH HOH . G 4 HOH B 30 430 43 HOH HOH . G 4 HOH B 31 431 101 HOH HOH . G 4 HOH B 32 432 113 HOH HOH . G 4 HOH B 33 433 121 HOH HOH . G 4 HOH B 34 434 102 HOH HOH . G 4 HOH B 35 435 112 HOH HOH . G 4 HOH B 36 436 59 HOH HOH . H 4 HOH M 1 401 75 HOH HOH . H 4 HOH M 2 402 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 K5M . . . E 3 0.378 -17.63 44.075 1 61.86 ? C10 K5M 301 B 1 HETATM 2 C C13 K5M . . . E 3 0.359 -19.548 46.134 1 71.49 ? C13 K5M 301 B 1 HETATM 3 C C21 K5M . . . E 3 -2.182 -8.8 42.337 1 35.09 ? C21 K5M 301 B 1 HETATM 4 C C22 K5M . . . E 3 -2.404 -7.85 43.339 1 33.9 ? C22 K5M 301 B 1 HETATM 5 C C24 K5M . . . E 3 -1.67 -6.964 44.401 1 32.96 ? C24 K5M 301 B 1 HETATM 6 C C02 K5M . . . E 3 -1.168 -9.87 44.234 1 36.81 ? C02 K5M 301 B 1 HETATM 7 C C03 K5M . . . E 3 -0.926 -9.744 42.871 1 28.41 ? C03 K5M 301 B 1 HETATM 8 C C05 K5M . . . E 3 0.222 -11.866 42.076 1 37.96 ? C05 K5M 301 B 1 HETATM 9 C C06 K5M . . . E 3 0.105 -13.264 41.411 1 37.04 ? C06 K5M 301 B 1 HETATM 10 C C07 K5M . . . E 3 0.78 -14.363 42.307 1 46.3 ? C07 K5M 301 B 1 HETATM 11 C C08 K5M . . . E 3 -0.101 -15.34 43.159 1 53.51 ? C08 K5M 301 B 1 HETATM 12 C C11 K5M . . . E 3 -0.508 -18.714 44.03 1 62.57 ? C11 K5M 301 B 1 HETATM 13 C C12 K5M . . . E 3 -0.524 -19.663 45.057 1 69.52 ? C12 K5M 301 B 1 HETATM 14 C C14 K5M . . . E 3 1.257 -18.478 46.19 1 70.71 ? C14 K5M 301 B 1 HETATM 15 C C16 K5M . . . E 3 3.388 -16.773 47.307 1 63.11 ? C16 K5M 301 B 1 HETATM 16 C C19 K5M . . . E 3 1.266 -17.527 45.155 1 65.18 ? C19 K5M 301 B 1 HETATM 17 C C23 K5M . . . E 3 -1.886 -8.484 44.669 1 30.32 ? C23 K5M 301 B 1 HETATM 18 N N04 K5M . . . E 3 -0.983 -11.033 42.177 1 32.24 ? N04 K5M 301 B 1 HETATM 19 O O01 K5M . . . E 3 -0.925 -10.752 45.001 1 30.95 ? O01 K5M 301 B 1 HETATM 20 O O09 K5M . . . E 3 0.394 -16.679 43.004 1 62.88 ? O09 K5M 301 B 1 HETATM 21 O O17 K5M . . . E 3 1.718 -18.245 48.896 1 68.52 ? O17 K5M 301 B 1 HETATM 22 O O18 K5M . . . E 3 3.291 -19.46 47.82 1 63.92 ? O18 K5M 301 B 1 HETATM 23 O O20 K5M . . . E 3 1.267 -11.477 42.523 1 34.31 ? O20 K5M 301 B 1 HETATM 24 S S15 K5M . . . E 3 2.421 -18.295 47.602 1 77.97 ? S15 K5M 301 B 1 HETATM 25 H H131 K5M . . . E 3 0.35 -20.184 46.813 1 85.78 ? H131 K5M 301 B 1 HETATM 26 H H212 K5M . . . E 3 -1.938 -8.359 41.508 1 42.11 ? H212 K5M 301 B 1 HETATM 27 H H211 K5M . . . E 3 -2.976 -9.343 42.211 1 42.11 ? H211 K5M 301 B 1 HETATM 28 H H221 K5M . . . E 3 -3.361 -7.728 43.445 1 40.68 ? H221 K5M 301 B 1 HETATM 29 H H241 K5M . . . E 3 -0.764 -6.703 44.174 1 39.56 ? H241 K5M 301 B 1 HETATM 30 H H242 K5M . . . E 3 -2.237 -6.364 44.91 1 39.56 ? H242 K5M 301 B 1 HETATM 31 H H031 K5M . . . E 3 -0.056 -9.339 42.73 1 34.09 ? H031 K5M 301 B 1 HETATM 32 H H061 K5M . . . E 3 -0.831 -13.483 41.287 1 44.45 ? H061 K5M 301 B 1 HETATM 33 H H062 K5M . . . E 3 0.541 -13.245 40.545 1 44.45 ? H062 K5M 301 B 1 HETATM 34 H H071 K5M . . . E 3 1.319 -14.913 41.717 1 55.56 ? H071 K5M 301 B 1 HETATM 35 H H072 K5M . . . E 3 1.364 -13.9 42.926 1 55.56 ? H072 K5M 301 B 1 HETATM 36 H H081 K5M . . . E 3 -0.055 -15.085 44.093 1 64.21 ? H081 K5M 301 B 1 HETATM 37 H H082 K5M . . . E 3 -1.02 -15.298 42.853 1 64.21 ? H082 K5M 301 B 1 HETATM 38 H H111 K5M . . . E 3 -1.091 -18.804 43.31 1 75.09 ? H111 K5M 301 B 1 HETATM 39 H H121 K5M . . . E 3 -1.125 -20.372 45.024 1 83.43 ? H121 K5M 301 B 1 HETATM 40 H H161 K5M . . . E 3 4.268 -16.867 47.703 1 75.73 ? H161 K5M 301 B 1 HETATM 41 H H163 K5M . . . E 3 2.931 -16.017 47.709 1 75.73 ? H163 K5M 301 B 1 HETATM 42 H H162 K5M . . . E 3 3.477 -16.626 46.352 1 75.73 ? H162 K5M 301 B 1 HETATM 43 H H191 K5M . . . E 3 1.869 -16.82 45.188 1 78.21 ? H191 K5M 301 B 1 HETATM 44 H H231 K5M . . . E 3 -2.629 -8.64 45.273 1 36.39 ? H231 K5M 301 B 1 HETATM 45 H H041 K5M . . . E 3 -1.723 -11.302 41.83 1 38.68 ? H041 K5M 301 B 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 45 #