data_6MX8 # _model_server_result.job_id hvoGwF3b788-xclyKanETQ _model_server_result.datetime_utc '2024-12-23 12:23:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mx8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1500}' # _entry.id 6MX8 # _exptl.entry_id 6MX8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 584.092 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-chloro-N~4~-[2-(dimethylphosphoryl)phenyl]-N~2~-{2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl}pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MX8 _cell.length_a 51.891 _cell.length_b 57.502 _cell.length_c 103.986 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MX8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H39 Cl N7 O2 P' _chem_comp.formula_weight 584.092 _chem_comp.id 6GY _chem_comp.mon_nstd_flag . _chem_comp.name 5-chloro-N~4~-[2-(dimethylphosphoryl)phenyl]-N~2~-{2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl}pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Brigatinib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 N25 6GY sing 1 n n N25 C26 6GY sing 2 n n N25 C24 6GY sing 3 n n C26 C27 6GY sing 4 n n C27 N22 6GY sing 5 n n C24 C23 6GY sing 6 n n C23 N22 6GY sing 7 n n N22 C19 6GY sing 8 n n C20 C19 6GY sing 9 n n C20 C21 6GY sing 10 n n C19 C18 6GY sing 11 n n C21 N16 6GY sing 12 n n C18 C17 6GY sing 13 n n N16 C17 6GY sing 14 n n N16 C11 6GY sing 15 n n C34 C33 6GY doub 16 n y C34 C35 6GY sing 17 n y C33 C32 6GY sing 18 n y C11 C12 6GY doub 19 n y C11 C10 6GY sing 20 n y C12 C13 6GY sing 21 n y C35 C30 6GY doub 22 n y C10 C9 6GY doub 23 n y C32 C31 6GY doub 24 n y C13 O14 6GY sing 25 n n C13 C8 6GY doub 26 n y O14 C15 6GY sing 27 n n C30 C31 6GY sing 28 n y C30 N29 6GY sing 29 n n C9 C8 6GY sing 30 n y C8 N7 6GY sing 31 n n C31 P1 6GY sing 32 n n N29 C2 6GY sing 33 n n N3 C2 6GY doub 34 n y N3 C4 6GY sing 35 n y N7 C4 6GY sing 36 n n C2 C1 6GY sing 37 n y C4 N5 6GY doub 38 n y C3 P1 6GY sing 39 n n P1 O41 6GY doub 40 n n P1 C37 6GY sing 41 n n C1 C6 6GY doub 42 n y C1 CL 6GY sing 43 n n N5 C6 6GY sing 44 n y C3 H1 6GY sing 45 n n C3 H2 6GY sing 46 n n C3 H3 6GY sing 47 n n C6 H4 6GY sing 48 n n C9 H5 6GY sing 49 n n C10 H6 6GY sing 50 n n C12 H7 6GY sing 51 n n C15 H8 6GY sing 52 n n C15 H9 6GY sing 53 n n C15 H10 6GY sing 54 n n C18 H11 6GY sing 55 n n C18 H12 6GY sing 56 n n C26 H13 6GY sing 57 n n C26 H14 6GY sing 58 n n N7 H15 6GY sing 59 n n C17 H16 6GY sing 60 n n C17 H17 6GY sing 61 n n C19 H18 6GY sing 62 n n C20 H19 6GY sing 63 n n C20 H20 6GY sing 64 n n C21 H21 6GY sing 65 n n C21 H22 6GY sing 66 n n C23 H24 6GY sing 67 n n C23 H25 6GY sing 68 n n C24 H26 6GY sing 69 n n C24 H27 6GY sing 70 n n C27 H29 6GY sing 71 n n C27 H30 6GY sing 72 n n C28 H31 6GY sing 73 n n C28 H32 6GY sing 74 n n C28 H33 6GY sing 75 n n N29 H34 6GY sing 76 n n C32 H35 6GY sing 77 n n C33 H36 6GY sing 78 n n C34 H37 6GY sing 79 n n C35 H38 6GY sing 80 n n C37 H39 6GY sing 81 n n C37 H40 6GY sing 82 n n C37 H41 6GY sing 83 n n # _atom_sites.entry_id 6MX8 _atom_sites.fract_transf_matrix[1][1] 0.019271 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017391 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009617 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6GY A 1 1500 1500 6GY LIG . C 3 HOH A 1 1601 1581 HOH HOH . C 3 HOH A 2 1602 1524 HOH HOH . C 3 HOH A 3 1603 1537 HOH HOH . C 3 HOH A 4 1604 1521 HOH HOH . C 3 HOH A 5 1605 1516 HOH HOH . C 3 HOH A 6 1606 1513 HOH HOH . C 3 HOH A 7 1607 1512 HOH HOH . C 3 HOH A 8 1608 1517 HOH HOH . C 3 HOH A 9 1609 1528 HOH HOH . C 3 HOH A 10 1610 1522 HOH HOH . C 3 HOH A 11 1611 1582 HOH HOH . C 3 HOH A 12 1612 1563 HOH HOH . C 3 HOH A 13 1613 1525 HOH HOH . C 3 HOH A 14 1614 1538 HOH HOH . C 3 HOH A 15 1615 1529 HOH HOH . C 3 HOH A 16 1616 1539 HOH HOH . C 3 HOH A 17 1617 1542 HOH HOH . C 3 HOH A 18 1618 1519 HOH HOH . C 3 HOH A 19 1619 1520 HOH HOH . C 3 HOH A 20 1620 1526 HOH HOH . C 3 HOH A 21 1621 1534 HOH HOH . C 3 HOH A 22 1622 1511 HOH HOH . C 3 HOH A 23 1623 1541 HOH HOH . C 3 HOH A 24 1624 1523 HOH HOH . C 3 HOH A 25 1625 1540 HOH HOH . C 3 HOH A 26 1626 1533 HOH HOH . C 3 HOH A 27 1627 1555 HOH HOH . C 3 HOH A 28 1628 1548 HOH HOH . C 3 HOH A 29 1629 1561 HOH HOH . C 3 HOH A 30 1630 1514 HOH HOH . C 3 HOH A 31 1631 1530 HOH HOH . C 3 HOH A 32 1632 1550 HOH HOH . C 3 HOH A 33 1633 1518 HOH HOH . C 3 HOH A 34 1634 1566 HOH HOH . C 3 HOH A 35 1635 1536 HOH HOH . C 3 HOH A 36 1636 1531 HOH HOH . C 3 HOH A 37 1637 1544 HOH HOH . C 3 HOH A 38 1638 1543 HOH HOH . C 3 HOH A 39 1639 1554 HOH HOH . C 3 HOH A 40 1640 1547 HOH HOH . C 3 HOH A 41 1641 1549 HOH HOH . C 3 HOH A 42 1642 1552 HOH HOH . C 3 HOH A 43 1643 1557 HOH HOH . C 3 HOH A 44 1644 1562 HOH HOH . C 3 HOH A 45 1645 1551 HOH HOH . C 3 HOH A 46 1646 1556 HOH HOH . C 3 HOH A 47 1647 1560 HOH HOH . C 3 HOH A 48 1648 1545 HOH HOH . C 3 HOH A 49 1649 1569 HOH HOH . C 3 HOH A 50 1650 1553 HOH HOH . C 3 HOH A 51 1651 1559 HOH HOH . C 3 HOH A 52 1652 1564 HOH HOH . C 3 HOH A 53 1653 1570 HOH HOH . C 3 HOH A 54 1654 1567 HOH HOH . C 3 HOH A 55 1655 1568 HOH HOH . C 3 HOH A 56 1656 1580 HOH HOH . C 3 HOH A 57 1657 1546 HOH HOH . C 3 HOH A 58 1658 1565 HOH HOH . C 3 HOH A 59 1659 1576 HOH HOH . C 3 HOH A 60 1660 1571 HOH HOH . C 3 HOH A 61 1661 1572 HOH HOH . C 3 HOH A 62 1662 1574 HOH HOH . C 3 HOH A 63 1663 1573 HOH HOH . C 3 HOH A 64 1664 1578 HOH HOH . C 3 HOH A 65 1665 1579 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6GY . . . B 2 4.21 15.596 9.908 1 46.96 ? C1 6GY 1500 A 1 HETATM 2 C C2 6GY . . . B 2 4.705 16.504 8.989 1 45.16 ? C2 6GY 1500 A 1 HETATM 3 C C3 6GY . . . B 2 10.722 16.948 8.986 1 45.73 ? C3 6GY 1500 A 1 HETATM 4 C C4 6GY . . . B 2 2.69 17.629 9.088 1 43.81 ? C4 6GY 1500 A 1 HETATM 5 C C6 6GY . . . B 2 2.93 15.774 10.373 1 39.62 ? C6 6GY 1500 A 1 HETATM 6 C C9 6GY . . . B 2 3.492 20.206 7.558 1 54.72 ? C9 6GY 1500 A 1 HETATM 7 C C10 6GY . . . B 2 3.708 21.358 6.825 1 56.61 ? C10 6GY 1500 A 1 HETATM 8 C C11 6GY . . . B 2 2.642 22.137 6.413 1 62.19 ? C11 6GY 1500 A 1 HETATM 9 C C12 6GY . . . B 2 1.358 21.756 6.741 1 51.37 ? C12 6GY 1500 A 1 HETATM 10 C C13 6GY . . . B 2 1.149 20.609 7.479 1 54.27 ? C13 6GY 1500 A 1 HETATM 11 O O14 6GY . . . B 2 -0.123 20.173 7.836 1 50.36 ? O14 6GY 1500 A 1 HETATM 12 C C15 6GY . . . B 2 -1.082 20.878 7.059 1 53.88 ? C15 6GY 1500 A 1 HETATM 13 C C18 6GY . . . B 2 3.275 25.76 5.575 1 87.03 ? C18 6GY 1500 A 1 HETATM 14 C C26 6GY . . . B 2 4.727 28.287 1.634 1 85.02 ? C26 6GY 1500 A 1 HETATM 15 N N3 6GY . . . B 2 3.923 17.508 8.578 1 40.44 ? N3 6GY 1500 A 1 HETATM 16 N N5 6GY . . . B 2 2.151 16.785 9.978 1 41.89 ? N5 6GY 1500 A 1 HETATM 17 N N7 6GY . . . B 2 1.872 18.669 8.628 1 53.7 ? N7 6GY 1500 A 1 HETATM 18 C C8 6GY . . . B 2 2.206 19.821 7.886 1 50.85 ? C8 6GY 1500 A 1 HETATM 19 N N16 6GY . . . B 2 2.851 23.316 5.665 1 77.34 ? N16 6GY 1500 A 1 HETATM 20 C C17 6GY . . . B 2 3.444 24.465 6.341 1 86.24 ? C17 6GY 1500 A 1 HETATM 21 C C19 6GY . . . B 2 3.701 25.589 4.135 1 96.47 ? C19 6GY 1500 A 1 HETATM 22 C C20 6GY . . . B 2 2.894 24.483 3.479 1 93.99 ? C20 6GY 1500 A 1 HETATM 23 C C21 6GY . . . B 2 3.059 23.17 4.225 1 84.57 ? C21 6GY 1500 A 1 HETATM 24 N N22 6GY . . . B 2 3.709 26.887 3.394 1 94.44 ? N22 6GY 1500 A 1 HETATM 25 C C23 6GY . . . B 2 2.387 27.562 3.221 1 95.85 ? C23 6GY 1500 A 1 HETATM 26 C C24 6GY . . . B 2 2.563 28.953 2.646 1 92.1 ? C24 6GY 1500 A 1 HETATM 27 N N25 6GY . . . B 2 3.38 28.879 1.408 1 93.03 ? N25 6GY 1500 A 1 HETATM 28 C C27 6GY . . . B 2 4.581 26.882 2.184 1 85.01 ? C27 6GY 1500 A 1 HETATM 29 C C28 6GY . . . B 2 3.409 30.162 0.666 1 92.07 ? C28 6GY 1500 A 1 HETATM 30 N N29 6GY . . . B 2 6.024 16.343 8.49 1 47.14 ? N29 6GY 1500 A 1 HETATM 31 C C30 6GY . . . B 2 6.73 17.328 7.762 1 58.95 ? C30 6GY 1500 A 1 HETATM 32 C C31 6GY . . . B 2 8.047 17.659 8.059 1 65.54 ? C31 6GY 1500 A 1 HETATM 33 C C32 6GY . . . B 2 8.686 18.629 7.311 1 68.18 ? C32 6GY 1500 A 1 HETATM 34 C C33 6GY . . . B 2 8.046 19.271 6.275 1 73.44 ? C33 6GY 1500 A 1 HETATM 35 C C34 6GY . . . B 2 6.744 18.943 5.975 1 67.59 ? C34 6GY 1500 A 1 HETATM 36 C C35 6GY . . . B 2 6.099 17.978 6.718 1 63.13 ? C35 6GY 1500 A 1 HETATM 37 P P1 6GY . . . B 2 8.944 16.88 9.37 1 58.31 ? P1 6GY 1500 A 1 HETATM 38 C C37 6GY . . . B 2 8.892 17.93 10.841 1 55.16 ? C37 6GY 1500 A 1 HETATM 39 O O41 6GY . . . B 2 8.522 15.454 9.634 1 56.71 ? O41 6GY 1500 A 1 HETATM 40 CL CL 6GY . . . B 2 5.148 14.267 10.47 0.75 43.61 ? CL 6GY 1500 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 40 #