data_6MXD # _model_server_result.job_id 75g-E95JNRPjky56hkQlTw _model_server_result.datetime_utc '2024-12-26 12:48:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mxd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 6MXD # _exptl.entry_id 6MXD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 85.74 _cell.angle_beta 74.58 _cell.angle_gamma 62.87 _cell.entry_id 6MXD _cell.length_a 59.285 _cell.length_b 64.984 _cell.length_c 79.075 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MXD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,L,M 1 1 C,I,J,N 2 1 D,K,O 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 59.285 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F MG MG . A MG 302 1_555 L O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc2 F MG MG . A MG 302 1_555 L O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc3 H MG MG . B MG 3302 1_555 M O HOH . B HOH 3405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 173 n n P O2P IMP sing 174 n n P O3P IMP sing 175 n n P O5' IMP sing 176 n n O2P HOP2 IMP sing 177 n n O3P HOP3 IMP sing 178 n n O5' C5' IMP sing 179 n n C5' C4' IMP sing 180 n n C5' "H5'1" IMP sing 181 n n C5' "H5'2" IMP sing 182 n n C4' O4' IMP sing 183 n n C4' C3' IMP sing 184 n n C4' H4' IMP sing 185 n n O4' C1' IMP sing 186 n n C3' O3' IMP sing 187 n n C3' C2' IMP sing 188 n n C3' H3' IMP sing 189 n n O3' HO3' IMP sing 190 n n C2' O2' IMP sing 191 n n C2' C1' IMP sing 192 n n C2' H2' IMP sing 193 n n O2' HO2' IMP sing 194 n n C1' N9 IMP sing 195 n n C1' H1' IMP sing 196 n n N9 C8 IMP sing 197 n y N9 C4 IMP sing 198 n y C8 N7 IMP doub 199 n y C8 H8 IMP sing 200 n n N7 C5 IMP sing 201 n y C5 C6 IMP sing 202 n n C5 C4 IMP doub 203 n y C6 O6 IMP doub 204 n n C6 N1 IMP sing 205 n n N1 C2 IMP sing 206 n n N1 HN1 IMP sing 207 n n C2 N3 IMP doub 208 n n C2 H2 IMP sing 209 n n N3 C4 IMP sing 210 n n # _atom_sites.entry_id 6MXD _atom_sites.fract_transf_matrix[1][1] 0.016868 _atom_sites.fract_transf_matrix[1][2] -0.008644 _atom_sites.fract_transf_matrix[1][3] -0.005134 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017291 _atom_sites.fract_transf_matrix[2][3] 0.000949 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013138 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 IMP A 1 301 301 IMP IMP . F 3 MG A 1 302 302 MG MG . G 2 IMP B 1 3301 3301 IMP IMP . H 3 MG B 1 3302 3302 MG MG . I 2 IMP C 1 301 301 IMP IMP . J 3 MG C 1 302 302 MG MG . K 2 IMP D 1 301 301 IMP IMP . L 4 HOH A 1 401 401 HOH HOH . L 4 HOH A 2 402 402 HOH HOH . L 4 HOH A 3 403 403 HOH HOH . L 4 HOH A 4 404 404 HOH HOH . L 4 HOH A 5 405 405 HOH HOH . L 4 HOH A 6 406 406 HOH HOH . M 4 HOH B 1 3401 3401 HOH HOH . M 4 HOH B 2 3402 3402 HOH HOH . M 4 HOH B 3 3403 3403 HOH HOH . M 4 HOH B 4 3404 3404 HOH HOH . M 4 HOH B 5 3405 3405 HOH HOH . M 4 HOH B 6 3406 3406 HOH HOH . M 4 HOH B 7 3407 3407 HOH HOH . M 4 HOH B 8 3408 3408 HOH HOH . M 4 HOH B 9 3409 3409 HOH HOH . N 4 HOH C 1 401 401 HOH HOH . N 4 HOH C 2 402 402 HOH HOH . N 4 HOH C 3 403 403 HOH HOH . N 4 HOH C 4 404 405 HOH HOH . O 4 HOH D 1 401 401 HOH HOH . O 4 HOH D 2 402 402 HOH HOH . O 4 HOH D 3 403 403 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . E 2 55.769 4.251 -6.789 1 52.61 ? P IMP 301 A 1 HETATM 2 O O1P IMP . . . E 2 56.481 5.412 -7.437 1 53.61 ? O1P IMP 301 A 1 HETATM 3 O O2P IMP . . . E 2 56.117 2.851 -7.237 1 53.9 -1 O2P IMP 301 A 1 HETATM 4 O O3P IMP . . . E 2 55.972 4.336 -5.294 1 52.82 ? O3P IMP 301 A 1 HETATM 5 O O5' IMP . . . E 2 54.219 4.461 -7.089 1 51.61 ? O5' IMP 301 A 1 HETATM 6 C C5' IMP . . . E 2 53.565 5.661 -6.707 1 50.55 ? C5' IMP 301 A 1 HETATM 7 C C4' IMP . . . E 2 52.24 5.82 -7.408 1 49.3 ? C4' IMP 301 A 1 HETATM 8 O O4' IMP . . . E 2 52.343 6.849 -8.424 1 49.26 ? O4' IMP 301 A 1 HETATM 9 C C3' IMP . . . E 2 51.734 4.603 -8.166 1 48.74 ? C3' IMP 301 A 1 HETATM 10 O O3' IMP . . . E 2 51.11 3.649 -7.323 1 49.23 ? O3' IMP 301 A 1 HETATM 11 C C2' IMP . . . E 2 50.791 5.218 -9.193 1 48.36 ? C2' IMP 301 A 1 HETATM 12 O O2' IMP . . . E 2 49.536 5.524 -8.604 1 47.72 ? O2' IMP 301 A 1 HETATM 13 C C1' IMP . . . E 2 51.505 6.533 -9.516 1 48.8 ? C1' IMP 301 A 1 HETATM 14 N N9 IMP . . . E 2 52.323 6.44 -10.74 1 47.84 ? N9 IMP 301 A 1 HETATM 15 C C8 IMP . . . E 2 53.607 5.974 -10.863 1 48.82 ? C8 IMP 301 A 1 HETATM 16 N N7 IMP . . . E 2 53.975 6.072 -12.163 1 48.8 ? N7 IMP 301 A 1 HETATM 17 C C5 IMP . . . E 2 52.947 6.596 -12.869 1 47.98 ? C5 IMP 301 A 1 HETATM 18 C C6 IMP . . . E 2 52.791 6.905 -14.215 1 47.83 ? C6 IMP 301 A 1 HETATM 19 O O6 IMP . . . E 2 53.776 6.945 -14.95 1 47.54 ? O6 IMP 301 A 1 HETATM 20 N N1 IMP . . . E 2 51.598 7.442 -14.652 1 48.47 ? N1 IMP 301 A 1 HETATM 21 C C2 IMP . . . E 2 50.574 7.67 -13.756 1 48.34 ? C2 IMP 301 A 1 HETATM 22 N N3 IMP . . . E 2 50.739 7.361 -12.422 1 47.27 ? N3 IMP 301 A 1 HETATM 23 C C4 IMP . . . E 2 51.906 6.833 -11.985 1 46.84 ? C4 IMP 301 A 1 # _model_server_stats.io_time_ms 88 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 23 #