data_6MXD
#
_model_server_result.job_id            KDnc8HWTIW30cuwYeOxf6g 
_model_server_result.datetime_utc      '2024-12-26 13:01:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mxd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":3301}' 
#
_entry.id    6MXD 
#
_exptl.entry_id    6MXD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              348.206 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'INOSINIC ACID' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         85.74 
_cell.angle_beta          74.58 
_cell.angle_gamma         62.87 
_cell.entry_id            6MXD 
_cell.length_a            59.285 
_cell.length_b            64.984 
_cell.length_c            79.075 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MXD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,L,M 1 1 
C,I,J,N 2 1 
D,K,O 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 59.285 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 F MG MG . A MG 302 1_555 L O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc2 F MG MG . A MG 302 1_555 L O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc3 H MG MG . B MG 3302 1_555 M O HOH . B HOH 3405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
#
_chem_comp.formula           'C10 H13 N4 O8 P' 
_chem_comp.formula_weight    348.206 
_chem_comp.id                IMP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'INOSINIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P IMP doub 173 n n 
P O2P IMP sing 174 n n 
P O3P IMP sing 175 n n 
P O5' IMP sing 176 n n 
O2P HOP2 IMP sing 177 n n 
O3P HOP3 IMP sing 178 n n 
O5' C5' IMP sing 179 n n 
C5' C4' IMP sing 180 n n 
C5' "H5'1" IMP sing 181 n n 
C5' "H5'2" IMP sing 182 n n 
C4' O4' IMP sing 183 n n 
C4' C3' IMP sing 184 n n 
C4' H4' IMP sing 185 n n 
O4' C1' IMP sing 186 n n 
C3' O3' IMP sing 187 n n 
C3' C2' IMP sing 188 n n 
C3' H3' IMP sing 189 n n 
O3' HO3' IMP sing 190 n n 
C2' O2' IMP sing 191 n n 
C2' C1' IMP sing 192 n n 
C2' H2' IMP sing 193 n n 
O2' HO2' IMP sing 194 n n 
C1' N9 IMP sing 195 n n 
C1' H1' IMP sing 196 n n 
N9 C8 IMP sing 197 n y 
N9 C4 IMP sing 198 n y 
C8 N7 IMP doub 199 n y 
C8 H8 IMP sing 200 n n 
N7 C5 IMP sing 201 n y 
C5 C6 IMP sing 202 n n 
C5 C4 IMP doub 203 n y 
C6 O6 IMP doub 204 n n 
C6 N1 IMP sing 205 n n 
N1 C2 IMP sing 206 n n 
N1 HN1 IMP sing 207 n n 
C2 N3 IMP doub 208 n n 
C2 H2 IMP sing 209 n n 
N3 C4 IMP sing 210 n n 
#
_atom_sites.entry_id                     6MXD 
_atom_sites.fract_transf_matrix[1][1]    0.016868 
_atom_sites.fract_transf_matrix[1][2]    -0.008644 
_atom_sites.fract_transf_matrix[1][3]    -0.005134 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017291 
_atom_sites.fract_transf_matrix[2][3]    0.000949 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013138 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 IMP A 1 301 301 IMP IMP . 
F 3 MG A 1 302 302 MG MG . 
G 2 IMP B 1 3301 3301 IMP IMP . 
H 3 MG B 1 3302 3302 MG MG . 
I 2 IMP C 1 301 301 IMP IMP . 
J 3 MG C 1 302 302 MG MG . 
K 2 IMP D 1 301 301 IMP IMP . 
L 4 HOH A 1 401 401 HOH HOH . 
L 4 HOH A 2 402 402 HOH HOH . 
L 4 HOH A 3 403 403 HOH HOH . 
L 4 HOH A 4 404 404 HOH HOH . 
L 4 HOH A 5 405 405 HOH HOH . 
L 4 HOH A 6 406 406 HOH HOH . 
M 4 HOH B 1 3401 3401 HOH HOH . 
M 4 HOH B 2 3402 3402 HOH HOH . 
M 4 HOH B 3 3403 3403 HOH HOH . 
M 4 HOH B 4 3404 3404 HOH HOH . 
M 4 HOH B 5 3405 3405 HOH HOH . 
M 4 HOH B 6 3406 3406 HOH HOH . 
M 4 HOH B 7 3407 3407 HOH HOH . 
M 4 HOH B 8 3408 3408 HOH HOH . 
M 4 HOH B 9 3409 3409 HOH HOH . 
N 4 HOH C 1 401 401 HOH HOH . 
N 4 HOH C 2 402 402 HOH HOH . 
N 4 HOH C 3 403 403 HOH HOH . 
N 4 HOH C 4 404 405 HOH HOH . 
O 4 HOH D 1 401 401 HOH HOH . 
O 4 HOH D 2 402 402 HOH HOH . 
O 4 HOH D 3 403 403 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P IMP . . . G 2 19.17 -5.83 -4.598 1 53.68 ? P IMP 3301 B 1 
HETATM 2 O O1P IMP . . . G 2 18.927 -4.877 -5.744 1 52.5 -1 O1P IMP 3301 B 1 
HETATM 3 O O2P IMP . . . G 2 18.685 -7.254 -4.731 1 52.22 ? O2P IMP 3301 B 1 
HETATM 4 O O3P IMP . . . G 2 18.547 -5.239 -3.355 1 53.02 ? O3P IMP 3301 B 1 
HETATM 5 O O5' IMP . . . G 2 20.746 -5.903 -4.381 1 52.23 ? O5' IMP 3301 B 1 
HETATM 6 C C5' IMP . . . G 2 21.339 -7.004 -3.709 1 51.29 ? C5' IMP 3301 B 1 
HETATM 7 C C4' IMP . . . G 2 22.77 -7.199 -4.139 1 50.63 ? C4' IMP 3301 B 1 
HETATM 8 O O4' IMP . . . G 2 23.065 -8.621 -4.22 1 51.9 ? O4' IMP 3301 B 1 
HETATM 9 C C3' IMP . . . G 2 23.129 -6.651 -5.517 1 49.42 ? C3' IMP 3301 B 1 
HETATM 10 O O3' IMP . . . G 2 23.48 -5.278 -5.49 1 48.27 ? O3' IMP 3301 B 1 
HETATM 11 C C2' IMP . . . G 2 24.261 -7.563 -5.965 1 50.39 ? C2' IMP 3301 B 1 
HETATM 12 O O2' IMP . . . G 2 25.483 -7.192 -5.344 1 50.29 ? O2' IMP 3301 B 1 
HETATM 13 C C1' IMP . . . G 2 23.811 -8.899 -5.383 1 50.4 ? C1' IMP 3301 B 1 
HETATM 14 N N9 IMP . . . G 2 22.958 -9.658 -6.32 1 51.4 ? N9 IMP 3301 B 1 
HETATM 15 C C8 IMP . . . G 2 21.603 -9.538 -6.496 1 50.25 ? C8 IMP 3301 B 1 
HETATM 16 N N7 IMP . . . G 2 21.21 -10.417 -7.447 1 50.6 ? N7 IMP 3301 B 1 
HETATM 17 C C5 IMP . . . G 2 22.293 -11.1 -7.878 1 53.28 ? C5 IMP 3301 B 1 
HETATM 18 C C6 IMP . . . G 2 22.454 -12.104 -8.827 1 51.9 ? C6 IMP 3301 B 1 
HETATM 19 O O6 IMP . . . G 2 21.468 -12.649 -9.319 1 52.47 ? O6 IMP 3301 B 1 
HETATM 20 N N1 IMP . . . G 2 23.71 -12.624 -9.06 1 53.54 ? N1 IMP 3301 B 1 
HETATM 21 C C2 IMP . . . G 2 24.795 -12.147 -8.354 1 54 ? C2 IMP 3301 B 1 
HETATM 22 N N3 IMP . . . G 2 24.627 -11.151 -7.413 1 53.73 ? N3 IMP 3301 B 1 
HETATM 23 C C4 IMP . . . G 2 23.397 -10.635 -7.178 1 50.68 ? C4 IMP 3301 B 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           23 
#