data_6MXT # _model_server_result.job_id 3xPV2k7bSXCtDP7KsdBP5Q _model_server_result.datetime_utc '2024-10-11 02:24:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mxt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1403}' # _entry.id 6MXT # _exptl.entry_id 6MXT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 123.859 _cell.angle_gamma 90 _cell.entry_id 6MXT _cell.length_a 178.682 _cell.length_b 52.589 _cell.length_c 125.917 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MXT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 J N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 241 A CYS 1106 1_555 A SG CYS 326 A CYS 1191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 319 A CYS 1184 1_555 A SG CYS 325 A CYS 1190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 22 N CYS 22 1_555 B SG CYS 95 N CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A C PHE 371 A PHE 1264 1_555 A N YCM 372 A YCM 1265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C YCM 372 A YCM 1265 1_555 A N LEU 373 A LEU 1266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C LEU 447 A LEU 1340 1_555 A N YCM 448 A YCM 1341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C YCM 448 A YCM 1341 1_555 A N LEU 449 A LEU 1342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A OD1 ASN 238 A ASN 1103 1_555 D MG MG . A MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc2 A OE2 GLU 242 A GLU 1107 1_555 E NI NI . A NI 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc3 A NE2 HIS 307 A HIS 1172 1_555 E NI NI . A NI 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc4 A O CYS 319 A CYS 1184 1_555 D MG MG . A MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc5 A O GLU 322 A GLU 1187 1_555 D MG MG . A MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc6 A O CYS 325 A CYS 1190 1_555 D MG MG . A MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc7 D MG MG . A MG 1402 1_555 L O HOH . A HOH 1517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc8 L O HOH . A HOH 1505 4_445 J NI NI . N NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc9 B ND1 HIS 117 N HIS 117 1_555 K NI NI . N NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc10 B ND1 HIS 119 N HIS 119 1_555 J NI NI . N NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc11 B NE2 HIS 121 N HIS 121 1_555 J NI NI . N NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc12 B NE2 HIS 122 N HIS 122 1_555 K NI NI . N NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6MXT _atom_sites.fract_transf_matrix[1][1] 0.005597 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003755 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019015 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009564 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 K5Y A 1 1401 501 K5Y F9S . D 4 MG A 1 1402 502 MG MG . E 5 NI A 1 1403 503 NI NI . F 6 OLC A 1 1404 504 OLC OLC . G 7 HTO A 1 1405 505 HTO HTO . H 8 OLA A 1 1406 506 OLA OLA . I 9 P33 A 1 1407 507 P33 P33 . J 5 NI N 1 201 201 NI NI . K 5 NI N 1 202 202 NI NI . L 10 HOH A 1 1501 601 HOH HOH . L 10 HOH A 2 1502 603 HOH HOH . L 10 HOH A 3 1503 602 HOH HOH . L 10 HOH A 4 1504 604 HOH HOH . L 10 HOH A 5 1505 304 HOH HOH . L 10 HOH A 6 1506 605 HOH HOH . L 10 HOH A 7 1507 606 HOH HOH . L 10 HOH A 8 1508 608 HOH HOH . L 10 HOH A 9 1509 609 HOH HOH . L 10 HOH A 10 1510 607 HOH HOH . L 10 HOH A 11 1511 610 HOH HOH . L 10 HOH A 12 1512 611 HOH HOH . L 10 HOH A 13 1513 612 HOH HOH . L 10 HOH A 14 1514 613 HOH HOH . L 10 HOH A 15 1515 614 HOH HOH . L 10 HOH A 16 1516 615 HOH HOH . L 10 HOH A 17 1517 616 HOH HOH . M 10 HOH N 1 301 301 HOH HOH . M 10 HOH N 2 302 302 HOH HOH . M 10 HOH N 3 303 303 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x -3.393 _atom_site.Cartn_y -19.305 _atom_site.Cartn_z 38.468 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 116.89 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 1403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #