data_6MXT # _model_server_result.job_id L_lMfJod4JBW4XkHZvj-jg _model_server_result.datetime_utc '2025-02-22 21:16:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mxt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1404}' # _entry.id 6MXT # _exptl.entry_id 6MXT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 123.859 _cell.angle_gamma 90 _cell.entry_id 6MXT _cell.length_a 178.682 _cell.length_b 52.589 _cell.length_c 125.917 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MXT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 241 A CYS 1106 1_555 A SG CYS 326 A CYS 1191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 319 A CYS 1184 1_555 A SG CYS 325 A CYS 1190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 22 N CYS 22 1_555 B SG CYS 95 N CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A C PHE 371 A PHE 1264 1_555 A N YCM 372 A YCM 1265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C YCM 372 A YCM 1265 1_555 A N LEU 373 A LEU 1266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C LEU 447 A LEU 1340 1_555 A N YCM 448 A YCM 1341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C YCM 448 A YCM 1341 1_555 A N LEU 449 A LEU 1342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A OD1 ASN 238 A ASN 1103 1_555 D MG MG . A MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc2 A OE2 GLU 242 A GLU 1107 1_555 E NI NI . A NI 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc3 A NE2 HIS 307 A HIS 1172 1_555 E NI NI . A NI 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc4 A O CYS 319 A CYS 1184 1_555 D MG MG . A MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc5 A O GLU 322 A GLU 1187 1_555 D MG MG . A MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc6 A O CYS 325 A CYS 1190 1_555 D MG MG . A MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc7 D MG MG . A MG 1402 1_555 L O HOH . A HOH 1517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc8 L O HOH . A HOH 1505 4_445 J NI NI . N NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc9 B ND1 HIS 117 N HIS 117 1_555 K NI NI . N NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc10 B ND1 HIS 119 N HIS 119 1_555 J NI NI . N NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc11 B NE2 HIS 121 N HIS 121 1_555 J NI NI . N NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc12 B NE2 HIS 122 N HIS 122 1_555 K NI NI . N NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 383 n n C10 C9 OLC doub 384 n n C10 C11 OLC sing 385 n n C9 C8 OLC sing 386 n n C17 C16 OLC sing 387 z n C11 C12 OLC sing 388 n n C8 C7 OLC sing 389 n n C24 C22 OLC sing 390 n n C24 O25 OLC sing 391 n n C16 C15 OLC sing 392 n n C12 C13 OLC sing 393 n n C7 C6 OLC sing 394 n n C15 C14 OLC sing 395 n n C13 C14 OLC sing 396 n n C6 C5 OLC sing 397 n n C5 C4 OLC sing 398 n n C4 C3 OLC sing 399 n n C3 C2 OLC sing 400 n n C2 C1 OLC sing 401 n n C21 C22 OLC sing 402 n n C21 O20 OLC sing 403 n n C1 O19 OLC doub 404 n n C1 O20 OLC sing 405 n n C22 O23 OLC sing 406 n n C18 H18 OLC sing 407 n n C18 H18A OLC sing 408 n n C18 H18B OLC sing 409 n n C10 H10 OLC sing 410 n n C9 H9 OLC sing 411 n n C17 H17 OLC sing 412 n n C17 H17A OLC sing 413 n n C11 H11 OLC sing 414 n n C11 H11A OLC sing 415 n n C8 H8 OLC sing 416 n n C8 H8A OLC sing 417 n n C24 H24 OLC sing 418 n n C24 H24A OLC sing 419 n n C16 H16 OLC sing 420 n n C16 H16A OLC sing 421 n n C12 H12 OLC sing 422 n n C12 H12A OLC sing 423 n n C7 H7 OLC sing 424 n n C7 H7A OLC sing 425 n n C15 H15 OLC sing 426 n n C15 H15A OLC sing 427 n n C13 H13 OLC sing 428 n n C13 H13A OLC sing 429 n n C6 H6 OLC sing 430 n n C6 H6A OLC sing 431 n n C14 H14 OLC sing 432 n n C14 H14A OLC sing 433 n n C5 H5 OLC sing 434 n n C5 H5A OLC sing 435 n n C4 H4 OLC sing 436 n n C4 H4A OLC sing 437 n n C3 H3 OLC sing 438 n n C3 H3A OLC sing 439 n n C2 H2 OLC sing 440 n n C2 H2A OLC sing 441 n n C21 H21 OLC sing 442 n n C21 H21A OLC sing 443 n n C22 H22 OLC sing 444 n n O25 HO25 OLC sing 445 n n O23 HO23 OLC sing 446 n n # _atom_sites.entry_id 6MXT _atom_sites.fract_transf_matrix[1][1] 0.005597 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003755 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019015 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009564 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 K5Y A 1 1401 501 K5Y F9S . D 4 MG A 1 1402 502 MG MG . E 5 NI A 1 1403 503 NI NI . F 6 OLC A 1 1404 504 OLC OLC . G 7 HTO A 1 1405 505 HTO HTO . H 8 OLA A 1 1406 506 OLA OLA . I 9 P33 A 1 1407 507 P33 P33 . J 5 NI N 1 201 201 NI NI . K 5 NI N 1 202 202 NI NI . L 10 HOH A 1 1501 601 HOH HOH . L 10 HOH A 2 1502 603 HOH HOH . L 10 HOH A 3 1503 602 HOH HOH . L 10 HOH A 4 1504 604 HOH HOH . L 10 HOH A 5 1505 304 HOH HOH . L 10 HOH A 6 1506 605 HOH HOH . L 10 HOH A 7 1507 606 HOH HOH . L 10 HOH A 8 1508 608 HOH HOH . L 10 HOH A 9 1509 609 HOH HOH . L 10 HOH A 10 1510 607 HOH HOH . L 10 HOH A 11 1511 610 HOH HOH . L 10 HOH A 12 1512 611 HOH HOH . L 10 HOH A 13 1513 612 HOH HOH . L 10 HOH A 14 1514 613 HOH HOH . L 10 HOH A 15 1515 614 HOH HOH . L 10 HOH A 16 1516 615 HOH HOH . L 10 HOH A 17 1517 616 HOH HOH . M 10 HOH N 1 301 301 HOH HOH . M 10 HOH N 2 302 302 HOH HOH . M 10 HOH N 3 303 303 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . F 6 -27.09 12.002 27.769 1 42.6 ? C18 OLC 1404 A 1 HETATM 2 C C10 OLC . . . F 6 -24.41 10.236 21.962 1 58.2 ? C10 OLC 1404 A 1 HETATM 3 C C9 OLC . . . F 6 -25.72 10.126 22.182 1 58.14 ? C9 OLC 1404 A 1 HETATM 4 C C17 OLC . . . F 6 -25.748 11.403 28.133 1 45.42 ? C17 OLC 1404 A 1 HETATM 5 C C11 OLC . . . F 6 -23.667 11.489 22.371 1 57.53 ? C11 OLC 1404 A 1 HETATM 6 C C8 OLC . . . F 6 -26.467 11.26 22.845 1 58.02 ? C8 OLC 1404 A 1 HETATM 7 C C24 OLC . . . F 6 -38.824 15.926 24.746 1 59.75 ? C24 OLC 1404 A 1 HETATM 8 C C16 OLC . . . F 6 -24.708 11.717 27.065 1 48.04 ? C16 OLC 1404 A 1 HETATM 9 C C12 OLC . . . F 6 -22.67 11.187 23.486 1 55.84 ? C12 OLC 1404 A 1 HETATM 10 C C7 OLC . . . F 6 -27.973 11.116 22.649 1 56.31 ? C7 OLC 1404 A 1 HETATM 11 C C15 OLC . . . F 6 -23.442 10.886 27.245 1 49.99 ? C15 OLC 1404 A 1 HETATM 12 C C13 OLC . . . F 6 -23.386 10.727 24.751 1 53.5 ? C13 OLC 1404 A 1 HETATM 13 C C6 OLC . . . F 6 -28.678 12.331 23.243 1 55.55 ? C6 OLC 1404 A 1 HETATM 14 C C14 OLC . . . F 6 -22.559 10.988 26.006 1 51.5 ? C14 OLC 1404 A 1 HETATM 15 C C5 OLC . . . F 6 -30.135 12.058 23.602 1 54.76 ? C5 OLC 1404 A 1 HETATM 16 C C4 OLC . . . F 6 -30.791 13.348 24.083 1 55.32 ? C4 OLC 1404 A 1 HETATM 17 C C3 OLC . . . F 6 -32.244 13.154 24.501 1 56.54 ? C3 OLC 1404 A 1 HETATM 18 C C2 OLC . . . F 6 -32.911 14.514 24.679 1 57.74 ? C2 OLC 1404 A 1 HETATM 19 C C21 OLC . . . F 6 -36.636 14.946 25.396 1 61.6 ? C21 OLC 1404 A 1 HETATM 20 C C1 OLC . . . F 6 -34.218 14.392 25.429 1 57.26 ? C1 OLC 1404 A 1 HETATM 21 C C22 OLC . . . F 6 -37.905 14.72 24.578 1 60.26 ? C22 OLC 1404 A 1 HETATM 22 O O19 OLC . . . F 6 -34.224 14.302 26.645 1 53.38 ? O19 OLC 1404 A 1 HETATM 23 O O25 OLC . . . F 6 -40.133 15.62 24.255 1 58.88 ? O25 OLC 1404 A 1 HETATM 24 O O23 OLC . . . F 6 -37.575 14.55 23.195 1 59.37 ? O23 OLC 1404 A 1 HETATM 25 O O20 OLC . . . F 6 -35.491 14.423 24.723 1 60.96 ? O20 OLC 1404 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 25 #