data_6MYS
#
_model_server_result.job_id            ZH_Nh_FEYrZoXT2zUmRu3g 
_model_server_result.datetime_utc      '2024-11-26 16:04:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mys 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":1001}' 
#
_entry.id    6MYS 
#
_exptl.entry_id    6MYS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              175.82 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FE2/S2 (INORGANIC) CLUSTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MYS 
_cell.length_a            71.68 
_cell.length_b            84.424 
_cell.length_c            293.019 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MYS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      9 
_struct_asym.id                             V 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C GLU 14 C GLU 14 1_555 C N MLZ 15 C MLZ 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 C C MLZ 15 C MLZ 15 1_555 C N ASN 16 C ASN 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A O ASN 366 A ASN 366 1_555 F K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? 
metalc ? metalc2 A O MET 367 A MET 367 1_555 F K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.018 ? 
metalc ? metalc3 A O GLY 368 A GLY 368 1_555 F K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? 
metalc ? metalc4 A O GLU 397 A GLU 397 1_555 F K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? 
metalc ? metalc5 A O ALA 399 A ALA 399 1_555 F K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? 
metalc ? metalc6 B SG CYS 65 B CYS 65 1_555 V FE2 FES . B FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc7 B SG CYS 70 B CYS 70 1_555 V FE2 FES . B FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc8 B SG CYS 73 B CYS 73 1_555 V FE1 FES . B FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc9 B SG CYS 85 B CYS 85 1_555 V FE1 FES . B FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc10 B SG CYS 158 B CYS 158 1_555 W FE3 SF4 . B SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc11 B SG CYS 161 B CYS 161 1_555 W FE4 SF4 . B SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc12 B SG CYS 164 B CYS 164 1_555 W FE1 SF4 . B SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc13 B SG CYS 168 B CYS 168 1_555 X FE1 F3S . B F3S 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc14 B SG CYS 215 B CYS 215 1_555 X FE4 F3S . B F3S 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc15 B SG CYS 221 B CYS 221 1_555 X FE3 F3S . B F3S 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc16 B SG CYS 225 B CYS 225 1_555 W FE2 SF4 . B SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc17 C NE2 HIS 98 C HIS 98 1_555 FA FE HEM . C HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc18 FA FE HEM . C HEM 201 1_555 D NE2 HIS 46 D HIS 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
#
_chem_comp.formula           'Fe2 S2' 
_chem_comp.formula_weight    175.82 
_chem_comp.id                FES 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FE2/S2 (INORGANIC) CLUSTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE1 S1 FES sing 359 n n 
FE1 S2 FES sing 360 n n 
FE2 S1 FES sing 361 n n 
FE2 S2 FES sing 362 n n 
#
_atom_sites.entry_id                     6MYS 
_atom_sites.fract_transf_matrix[1][1]    0.013951 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011845 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003413 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 FAD A 1 1001 1001 FAD FAD . 
F 6 K A 1 1002 1002 K K . 
G 7 OAA A 1 1003 1003 OAA OAA . 
H 8 UNL A 1 1004 1004 UNL UNL . 
I 8 UNL A 1 1005 1005 UNL UNL . 
J 8 UNL A 1 1006 1006 UNL UNL . 
K 8 UNL A 1 1007 1007 UNL UNL . 
L 8 UNL A 1 1008 1008 UNL UNL . 
M 8 UNL A 1 1009 1009 UNL UNL . 
N 8 UNL A 1 1010 1010 UNL UNL . 
O 8 UNL A 1 1011 1011 UNL UNL . 
P 8 UNL A 1 1012 1012 UNL UNL . 
Q 8 UNL A 1 1013 1013 UNL UNL . 
R 8 UNL A 1 1014 1014 UNL UNL . 
S 8 UNL A 1 1015 1015 UNL UNL . 
T 8 UNL A 1 1016 1016 UNL UNL . 
U 8 UNL A 1 1017 1017 UNL UNL . 
V 9 FES B 1 1001 1001 FES FES . 
W 10 SF4 B 1 1002 1002 SF4 SF4 . 
X 11 F3S B 1 1003 1003 F3S F3S . 
Y 8 UNL B 1 1004 1004 UNL UNL . 
Z 8 UNL B 1 1005 1005 UNL UNL . 
AA 8 UNL B 1 1006 1006 UNL UNL . 
BA 8 UNL B 1 1007 1007 UNL UNL . 
CA 8 UNL B 1 1008 1008 UNL UNL . 
DA 8 UNL B 1 1009 1009 UNL UNL . 
EA 12 AT5 C 1 202 202 AT5 AT5 . 
FA 13 HEM C 1 201 201 HEM HEM . 
GA 14 UMQ C 1 203 203 UMQ UMQ . 
HA 8 UNL C 1 204 204 UNL UNL . 
IA 8 UNL C 1 205 205 UNL UNL . 
JA 8 UNL C 1 206 206 UNL UNL . 
KA 8 UNL C 1 207 207 UNL UNL . 
LA 8 UNL C 1 208 208 UNL UNL . 
MA 8 UNL C 1 209 209 UNL UNL . 
NA 15 3PE D 1 201 201 3PE 3PE . 
OA 8 UNL D 1 202 202 UNL UNL . 
PA 8 UNL D 1 203 203 UNL UNL . 
QA 8 UNL D 1 204 204 UNL UNL . 
RA 8 UNL D 1 205 205 UNL UNL . 
SA 8 UNL D 1 206 206 UNL UNL . 
TA 8 UNL D 1 207 207 UNL UNL . 
UA 8 UNL D 1 208 208 UNL UNL . 
VA 8 UNL D 1 209 209 UNL UNL . 
WA 8 UNL D 1 210 210 UNL UNL . 
XA 8 UNL D 1 211 211 UNL UNL . 
YA 8 UNL D 1 212 212 UNL UNL . 
ZA 8 UNL D 1 213 213 UNL UNL . 
AB 8 UNL D 1 214 214 UNL UNL . 
BB 8 UNL D 1 215 215 UNL UNL . 
CB 16 HOH A 1 1101 1101 HOH HOH . 
CB 16 HOH A 2 1102 1102 HOH HOH . 
CB 16 HOH A 3 1103 1103 HOH HOH . 
CB 16 HOH A 4 1104 1104 HOH HOH . 
CB 16 HOH A 5 1105 1105 HOH HOH . 
CB 16 HOH A 6 1106 1106 HOH HOH . 
CB 16 HOH A 7 1107 1107 HOH HOH . 
CB 16 HOH A 8 1108 1108 HOH HOH . 
CB 16 HOH A 9 1109 1109 HOH HOH . 
CB 16 HOH A 10 1110 1110 HOH HOH . 
CB 16 HOH A 11 1111 1111 HOH HOH . 
CB 16 HOH A 12 1112 1112 HOH HOH . 
CB 16 HOH A 13 1113 1113 HOH HOH . 
CB 16 HOH A 14 1114 1114 HOH HOH . 
CB 16 HOH A 15 1115 1115 HOH HOH . 
CB 16 HOH A 16 1116 1116 HOH HOH . 
CB 16 HOH A 17 1117 1117 HOH HOH . 
CB 16 HOH A 18 1118 1118 HOH HOH . 
CB 16 HOH A 19 1119 1119 HOH HOH . 
CB 16 HOH A 20 1120 1120 HOH HOH . 
CB 16 HOH A 21 1121 1121 HOH HOH . 
CB 16 HOH A 22 1122 1122 HOH HOH . 
CB 16 HOH A 23 1123 1123 HOH HOH . 
CB 16 HOH A 24 1124 1124 HOH HOH . 
CB 16 HOH A 25 1125 1125 HOH HOH . 
CB 16 HOH A 26 1126 1126 HOH HOH . 
CB 16 HOH A 27 1127 1127 HOH HOH . 
CB 16 HOH A 28 1128 1128 HOH HOH . 
CB 16 HOH A 29 1129 1129 HOH HOH . 
CB 16 HOH A 30 1130 1130 HOH HOH . 
CB 16 HOH A 31 1131 1131 HOH HOH . 
CB 16 HOH A 32 1132 1132 HOH HOH . 
CB 16 HOH A 33 1133 1133 HOH HOH . 
CB 16 HOH A 34 1134 1134 HOH HOH . 
CB 16 HOH A 35 1135 1135 HOH HOH . 
CB 16 HOH A 36 1136 1136 HOH HOH . 
CB 16 HOH A 37 1137 1137 HOH HOH . 
CB 16 HOH A 38 1138 1138 HOH HOH . 
CB 16 HOH A 39 1139 1139 HOH HOH . 
CB 16 HOH A 40 1140 1140 HOH HOH . 
CB 16 HOH A 41 1141 1141 HOH HOH . 
CB 16 HOH A 42 1142 1142 HOH HOH . 
CB 16 HOH A 43 1143 1143 HOH HOH . 
CB 16 HOH A 44 1144 1144 HOH HOH . 
CB 16 HOH A 45 1145 1145 HOH HOH . 
DB 16 HOH B 1 1101 1101 HOH HOH . 
DB 16 HOH B 2 1102 1102 HOH HOH . 
DB 16 HOH B 3 1103 1103 HOH HOH . 
DB 16 HOH B 4 1104 1104 HOH HOH . 
DB 16 HOH B 5 1105 1105 HOH HOH . 
DB 16 HOH B 6 1106 1106 HOH HOH . 
DB 16 HOH B 7 1107 1107 HOH HOH . 
DB 16 HOH B 8 1108 1108 HOH HOH . 
DB 16 HOH B 9 1109 1109 HOH HOH . 
DB 16 HOH B 10 1110 1110 HOH HOH . 
DB 16 HOH B 11 1111 1111 HOH HOH . 
DB 16 HOH B 12 1112 1112 HOH HOH . 
DB 16 HOH B 13 1113 1113 HOH HOH . 
DB 16 HOH B 14 1114 1114 HOH HOH . 
DB 16 HOH B 15 1115 1115 HOH HOH . 
DB 16 HOH B 16 1116 1116 HOH HOH . 
DB 16 HOH B 17 1117 1117 HOH HOH . 
DB 16 HOH B 18 1118 1118 HOH HOH . 
DB 16 HOH B 19 1119 1119 HOH HOH . 
DB 16 HOH B 20 1120 1120 HOH HOH . 
DB 16 HOH B 21 1121 1121 HOH HOH . 
DB 16 HOH B 22 1122 1122 HOH HOH . 
DB 16 HOH B 23 1123 1123 HOH HOH . 
DB 16 HOH B 24 1124 1124 HOH HOH . 
DB 16 HOH B 25 1125 1125 HOH HOH . 
DB 16 HOH B 26 1126 1126 HOH HOH . 
DB 16 HOH B 27 1127 1127 HOH HOH . 
DB 16 HOH B 28 1128 1128 HOH HOH . 
DB 16 HOH B 29 1129 1129 HOH HOH . 
DB 16 HOH B 30 1130 1130 HOH HOH . 
DB 16 HOH B 31 1131 1131 HOH HOH . 
DB 16 HOH B 32 1132 1132 HOH HOH . 
DB 16 HOH B 33 1133 1133 HOH HOH . 
DB 16 HOH B 34 1134 1134 HOH HOH . 
DB 16 HOH B 35 1135 1135 HOH HOH . 
DB 16 HOH B 36 1136 1136 HOH HOH . 
DB 16 HOH B 37 1137 1137 HOH HOH . 
DB 16 HOH B 38 1138 1138 HOH HOH . 
DB 16 HOH B 39 1139 1139 HOH HOH . 
DB 16 HOH B 40 1140 1140 HOH HOH . 
DB 16 HOH B 41 1141 1141 HOH HOH . 
DB 16 HOH B 42 1142 1142 HOH HOH . 
DB 16 HOH B 43 1143 1143 HOH HOH . 
DB 16 HOH B 44 1144 1144 HOH HOH . 
DB 16 HOH B 45 1145 1145 HOH HOH . 
DB 16 HOH B 46 1146 1146 HOH HOH . 
DB 16 HOH B 47 1147 1147 HOH HOH . 
DB 16 HOH B 48 1148 1148 HOH HOH . 
DB 16 HOH B 49 1149 1149 HOH HOH . 
DB 16 HOH B 50 1150 1150 HOH HOH . 
DB 16 HOH B 51 1151 1151 HOH HOH . 
DB 16 HOH B 52 1152 1152 HOH HOH . 
EB 16 HOH C 1 301 301 HOH HOH . 
EB 16 HOH C 2 302 302 HOH HOH . 
EB 16 HOH C 3 303 303 HOH HOH . 
EB 16 HOH C 4 304 304 HOH HOH . 
EB 16 HOH C 5 305 305 HOH HOH . 
EB 16 HOH C 6 306 306 HOH HOH . 
EB 16 HOH C 7 307 307 HOH HOH . 
EB 16 HOH C 8 308 308 HOH HOH . 
EB 16 HOH C 9 309 309 HOH HOH . 
EB 16 HOH C 10 310 310 HOH HOH . 
EB 16 HOH C 11 311 311 HOH HOH . 
EB 16 HOH C 12 312 312 HOH HOH . 
EB 16 HOH C 13 313 313 HOH HOH . 
EB 16 HOH C 14 314 314 HOH HOH . 
EB 16 HOH C 15 315 315 HOH HOH . 
EB 16 HOH C 16 316 316 HOH HOH . 
EB 16 HOH C 17 317 317 HOH HOH . 
FB 16 HOH D 1 301 301 HOH HOH . 
FB 16 HOH D 2 302 302 HOH HOH . 
FB 16 HOH D 3 303 303 HOH HOH . 
FB 16 HOH D 4 304 304 HOH HOH . 
FB 16 HOH D 5 305 305 HOH HOH . 
FB 16 HOH D 6 306 306 HOH HOH . 
FB 16 HOH D 7 307 307 HOH HOH . 
FB 16 HOH D 8 308 308 HOH HOH . 
FB 16 HOH D 9 309 309 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE1 FES . . . V 9 25.154 13.877 107.484 1 58.92 ? FE1 FES 1001 B 1 
HETATM 2 FE FE2 FES . . . V 9 24.209 14.733 110.233 1 63.37 ? FE2 FES 1001 B 1 
HETATM 3 S S1 FES . . . V 9 26.184 14.368 109.357 1 50.99 ? S1 FES 1001 B 1 
HETATM 4 S S2 FES . . . V 9 23.27 14.685 108.246 1 53.47 ? S2 FES 1001 B 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#