data_6MZB # _model_server_result.job_id FRqXPxbdHXrkSh6rwgisuQ _model_server_result.datetime_utc '2024-12-22 06:10:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mzb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":903}' # _entry.id 6MZB # _exptl.entry_id 6MZB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 345.205 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-3',5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MZB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MZB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 84 B CYS 84 1_555 A SG CYS 92 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A NE2 HIS 561 B HIS 561 1_555 E ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc2 A NE2 HIS 597 B HIS 597 1_555 E ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc3 B NE2 HIS 563 A HIS 563 1_555 H ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc4 B NE2 HIS 599 A HIS 599 1_555 H ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc5 B OD2 ASP 600 A ASP 600 1_555 H ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? metalc ? metalc6 B OD1 ASP 600 A ASP 600 1_555 I MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc7 B OD2 ASP 600 A ASP 600 1_555 I MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc8 B OD1 ASP 720 A ASP 720 1_555 H ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? # _chem_comp.formula 'C10 H12 N5 O7 P' _chem_comp.formula_weight 345.205 _chem_comp.id 35G _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-3',5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 35G doub 1 n n P O2P 35G sing 2 n n P O5' 35G sing 3 n n P O3' 35G sing 4 n n O2P HOP2 35G sing 5 n n O5' C5' 35G sing 6 n n C5' C4' 35G sing 7 n n C5' "H5'1" 35G sing 8 n n C5' "H5'2" 35G sing 9 n n C4' O4' 35G sing 10 n n C4' C3' 35G sing 11 n n C4' H4' 35G sing 12 n n O4' C1' 35G sing 13 n n C3' O3' 35G sing 14 n n C3' C2' 35G sing 15 n n C3' H3' 35G sing 16 n n C2' O2' 35G sing 17 n n C2' C1' 35G sing 18 n n C2' H2' 35G sing 19 n n O2' HO2' 35G sing 20 n n C1' N9 35G sing 21 n n C1' H1' 35G sing 22 n n N9 C8 35G sing 23 n y N9 C4 35G sing 24 n y C8 N7 35G doub 25 n y C8 H8 35G sing 26 n n N7 C5 35G sing 27 n y C5 C6 35G sing 28 n n C5 C4 35G doub 29 n y C6 O6 35G doub 30 n n C6 N1 35G sing 31 n n N1 C2 35G sing 32 n n N1 HN1 35G sing 33 n n C2 N2 35G sing 34 n n C2 N3 35G doub 35 n n N2 HN21 35G sing 36 n n N2 HN22 35G sing 37 n n N3 C4 35G sing 38 n n # _atom_sites.entry_id 6MZB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 ZN B 1 901 902 ZN ZN . F 5 MG B 1 902 903 MG MG . G 6 35G B 1 903 905 35G 35G . H 4 ZN A 1 901 902 ZN ZN . I 5 MG A 1 902 903 MG MG . J 6 35G A 1 903 905 35G 35G . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 35G . . . J 6 158.594 166.032 157.406 1 12.26 ? P 35G 903 A 1 HETATM 2 O O1P 35G . . . J 6 159.231 165.406 156.125 1 12.26 ? O1P 35G 903 A 1 HETATM 3 O O2P 35G . . . J 6 158.81 167.259 156.627 1 12.26 ? O2P 35G 903 A 1 HETATM 4 O O5' 35G . . . J 6 159.011 167.258 158.36 1 12.26 ? O5' 35G 903 A 1 HETATM 5 C C5' 35G . . . J 6 158.489 167.348 159.675 1 12.26 ? C5' 35G 903 A 1 HETATM 6 C C4' 35G . . . J 6 157.355 166.378 159.775 1 12.26 ? C4' 35G 903 A 1 HETATM 7 O O4' 35G . . . J 6 156.482 166.655 160.888 1 12.26 ? O4' 35G 903 A 1 HETATM 8 C C3' 35G . . . J 6 156.431 166.427 158.587 1 12.26 ? C3' 35G 903 A 1 HETATM 9 O O3' 35G . . . J 6 157.032 165.853 157.44 1 12.26 ? O3' 35G 903 A 1 HETATM 10 C C2' 35G . . . J 6 155.19 165.718 159.115 1 12.26 ? C2' 35G 903 A 1 HETATM 11 O O2' 35G . . . J 6 155.364 164.31 159.088 1 12.26 ? O2' 35G 903 A 1 HETATM 12 C C1' 35G . . . J 6 155.185 166.181 160.582 1 12.26 ? C1' 35G 903 A 1 HETATM 13 N N9 35G . . . J 6 154.216 167.259 160.845 1 12.26 ? N9 35G 903 A 1 HETATM 14 C C8 35G . . . J 6 154.326 168.591 160.539 1 12.26 ? C8 35G 903 A 1 HETATM 15 N N7 35G . . . J 6 153.314 169.305 160.979 1 12.26 ? N7 35G 903 A 1 HETATM 16 C C5 35G . . . J 6 152.49 168.384 161.605 1 12.26 ? C5 35G 903 A 1 HETATM 17 C C6 35G . . . J 6 151.247 168.55 162.281 1 12.26 ? C6 35G 903 A 1 HETATM 18 O O6 35G . . . J 6 150.632 169.597 162.47 1 12.26 ? O6 35G 903 A 1 HETATM 19 N N1 35G . . . J 6 150.751 167.352 162.757 1 12.26 ? N1 35G 903 A 1 HETATM 20 C C2 35G . . . J 6 151.357 166.133 162.614 1 12.26 ? C2 35G 903 A 1 HETATM 21 N N2 35G . . . J 6 150.721 165.072 163.119 1 12.26 ? N2 35G 903 A 1 HETATM 22 N N3 35G . . . J 6 152.523 165.965 161.995 1 12.26 ? N3 35G 903 A 1 HETATM 23 C C4 35G . . . J 6 153.028 167.12 161.522 1 12.26 ? C4 35G 903 A 1 HETATM 24 H "H5'1" 35G . . . J 6 158.182 168.385 159.799 1 12.26 ? "H5'1" 35G 903 A 1 HETATM 25 H "H5'2" 35G . . . J 6 159.289 167.178 160.391 1 12.26 ? "H5'2" 35G 903 A 1 HETATM 26 H H4' 35G . . . J 6 157.756 165.379 159.95 1 12.26 ? H4' 35G 903 A 1 HETATM 27 H H3' 35G . . . J 6 156.148 167.448 158.324 1 12.26 ? H3' 35G 903 A 1 HETATM 28 H H2' 35G . . . J 6 154.286 166.013 158.585 1 12.26 ? H2' 35G 903 A 1 HETATM 29 H HO2' 35G . . . J 6 155.864 164.081 158.257 1 12.26 ? HO2' 35G 903 A 1 HETATM 30 H H1' 35G . . . J 6 154.963 165.361 161.267 1 12.26 ? H1' 35G 903 A 1 HETATM 31 H H8 35G . . . J 6 155.175 168.999 159.985 1 12.26 ? H8 35G 903 A 1 HETATM 32 H HN1 35G . . . J 6 149.864 167.415 163.246 1 12.26 ? HN1 35G 903 A 1 HETATM 33 H HN21 35G . . . J 6 149.827 165.123 163.603 1 12.26 ? HN21 35G 903 A 1 HETATM 34 H HN22 35G . . . J 6 151.12 164.145 163.028 1 12.26 ? HN22 35G 903 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 213 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #