data_6N0T
#
_model_server_result.job_id            7g4Cc5onNODtNaCnOmgjpQ 
_model_server_result.datetime_utc      '2024-11-23 04:30:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6n0t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    6N0T 
#
_exptl.entry_id    6N0T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6N0T 
_cell.length_a            49.31 
_cell.length_b            56.688 
_cell.length_c            172.718 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6N0T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C O2G ATP . A ATP 502 1_555 D MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc2 C O1B ATP . A ATP 502 1_555 D MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc3 C O2A ATP . A ATP 502 1_555 E MN MN . A MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc4 D MN MN . A MN 503 1_555 F O HOH . A HOH 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? 
metalc ? metalc5 E MN MN . A MN 504 1_555 F O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc6 E MN MN . A MN 504 1_555 F O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? 
metalc ? metalc7 E MN MN . A MN 504 1_555 F O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc8 E MN MN . A MN 504 1_555 F O HOH . A HOH 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc9 E MN MN . A MN 504 1_555 F O HOH . A HOH 652 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     6N0T 
_atom_sites.fract_transf_matrix[1][1]    0.02028 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01764 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00579 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 501 505 SO4 SO4 . 
C 3 ATP A 1 502 1000 ATP ATP . 
D 4 MN A 1 503 1 MN MN . 
E 4 MN A 1 504 2 MN MN . 
F 5 HOH A 1 601 57 HOH HOH . 
F 5 HOH A 2 602 9 HOH HOH . 
F 5 HOH A 3 603 30 HOH HOH . 
F 5 HOH A 4 604 6 HOH HOH . 
F 5 HOH A 5 605 46 HOH HOH . 
F 5 HOH A 6 606 24 HOH HOH . 
F 5 HOH A 7 607 43 HOH HOH . 
F 5 HOH A 8 608 51 HOH HOH . 
F 5 HOH A 9 609 18 HOH HOH . 
F 5 HOH A 10 610 29 HOH HOH . 
F 5 HOH A 11 611 89 HOH HOH . 
F 5 HOH A 12 612 130 HOH HOH . 
F 5 HOH A 13 613 22 HOH HOH . 
F 5 HOH A 14 614 23 HOH HOH . 
F 5 HOH A 15 615 64 HOH HOH . 
F 5 HOH A 16 616 74 HOH HOH . 
F 5 HOH A 17 617 80 HOH HOH . 
F 5 HOH A 18 618 73 HOH HOH . 
F 5 HOH A 19 619 14 HOH HOH . 
F 5 HOH A 20 620 36 HOH HOH . 
F 5 HOH A 21 621 59 HOH HOH . 
F 5 HOH A 22 622 4 HOH HOH . 
F 5 HOH A 23 623 39 HOH HOH . 
F 5 HOH A 24 624 87 HOH HOH . 
F 5 HOH A 25 625 10 HOH HOH . 
F 5 HOH A 26 626 55 HOH HOH . 
F 5 HOH A 27 627 25 HOH HOH . 
F 5 HOH A 28 628 42 HOH HOH . 
F 5 HOH A 29 629 45 HOH HOH . 
F 5 HOH A 30 630 133 HOH HOH . 
F 5 HOH A 31 631 127 HOH HOH . 
F 5 HOH A 32 632 28 HOH HOH . 
F 5 HOH A 33 633 48 HOH HOH . 
F 5 HOH A 34 634 52 HOH HOH . 
F 5 HOH A 35 635 83 HOH HOH . 
F 5 HOH A 36 636 84 HOH HOH . 
F 5 HOH A 37 637 69 HOH HOH . 
F 5 HOH A 38 638 75 HOH HOH . 
F 5 HOH A 39 639 66 HOH HOH . 
F 5 HOH A 40 640 77 HOH HOH . 
F 5 HOH A 41 641 54 HOH HOH . 
F 5 HOH A 42 642 68 HOH HOH . 
F 5 HOH A 43 643 65 HOH HOH . 
F 5 HOH A 44 644 7 HOH HOH . 
F 5 HOH A 45 645 32 HOH HOH . 
F 5 HOH A 46 646 128 HOH HOH . 
F 5 HOH A 47 647 47 HOH HOH . 
F 5 HOH A 48 648 62 HOH HOH . 
F 5 HOH A 49 649 115 HOH HOH . 
F 5 HOH A 50 650 49 HOH HOH . 
F 5 HOH A 51 651 72 HOH HOH . 
F 5 HOH A 52 652 53 HOH HOH . 
F 5 HOH A 53 653 26 HOH HOH . 
F 5 HOH A 54 654 81 HOH HOH . 
F 5 HOH A 55 655 40 HOH HOH . 
F 5 HOH A 56 656 67 HOH HOH . 
F 5 HOH A 57 657 108 HOH HOH . 
F 5 HOH A 58 658 12 HOH HOH . 
F 5 HOH A 59 659 79 HOH HOH . 
F 5 HOH A 60 660 61 HOH HOH . 
F 5 HOH A 61 661 138 HOH HOH . 
F 5 HOH A 62 662 11 HOH HOH . 
F 5 HOH A 63 663 8 HOH HOH . 
F 5 HOH A 64 664 16 HOH HOH . 
F 5 HOH A 65 665 44 HOH HOH . 
F 5 HOH A 66 666 15 HOH HOH . 
F 5 HOH A 67 667 111 HOH HOH . 
F 5 HOH A 68 668 63 HOH HOH . 
F 5 HOH A 69 669 50 HOH HOH . 
F 5 HOH A 70 670 33 HOH HOH . 
F 5 HOH A 71 671 91 HOH HOH . 
F 5 HOH A 72 672 58 HOH HOH . 
F 5 HOH A 73 673 21 HOH HOH . 
F 5 HOH A 74 674 1 HOH HOH . 
F 5 HOH A 75 675 5 HOH HOH . 
F 5 HOH A 76 676 96 HOH HOH . 
F 5 HOH A 77 677 41 HOH HOH . 
F 5 HOH A 78 678 37 HOH HOH . 
F 5 HOH A 79 679 124 HOH HOH . 
F 5 HOH A 80 680 27 HOH HOH . 
F 5 HOH A 81 681 71 HOH HOH . 
F 5 HOH A 82 682 2 HOH HOH . 
F 5 HOH A 83 683 20 HOH HOH . 
F 5 HOH A 84 684 70 HOH HOH . 
F 5 HOH A 85 685 86 HOH HOH . 
F 5 HOH A 86 686 34 HOH HOH . 
F 5 HOH A 87 687 31 HOH HOH . 
F 5 HOH A 88 688 122 HOH HOH . 
F 5 HOH A 89 689 76 HOH HOH . 
F 5 HOH A 90 690 90 HOH HOH . 
F 5 HOH A 91 691 60 HOH HOH . 
F 5 HOH A 92 692 129 HOH HOH . 
F 5 HOH A 93 693 88 HOH HOH . 
F 5 HOH A 94 694 121 HOH HOH . 
F 5 HOH A 95 695 105 HOH HOH . 
F 5 HOH A 96 696 131 HOH HOH . 
F 5 HOH A 97 697 123 HOH HOH . 
F 5 HOH A 98 698 98 HOH HOH . 
F 5 HOH A 99 699 78 HOH HOH . 
F 5 HOH A 100 700 35 HOH HOH . 
F 5 HOH A 101 701 38 HOH HOH . 
F 5 HOH A 102 702 126 HOH HOH . 
F 5 HOH A 103 703 95 HOH HOH . 
F 5 HOH A 104 704 119 HOH HOH . 
F 5 HOH A 105 705 82 HOH HOH . 
F 5 HOH A 106 706 136 HOH HOH . 
F 5 HOH A 107 707 56 HOH HOH . 
F 5 HOH A 108 708 100 HOH HOH . 
F 5 HOH A 109 709 118 HOH HOH . 
F 5 HOH A 110 710 97 HOH HOH . 
F 5 HOH A 111 711 135 HOH HOH . 
F 5 HOH A 112 712 92 HOH HOH . 
F 5 HOH A 113 713 13 HOH HOH . 
F 5 HOH A 114 714 116 HOH HOH . 
F 5 HOH A 115 715 120 HOH HOH . 
F 5 HOH A 116 716 102 HOH HOH . 
F 5 HOH A 117 717 99 HOH HOH . 
F 5 HOH A 118 718 104 HOH HOH . 
F 5 HOH A 119 719 85 HOH HOH . 
F 5 HOH A 120 720 114 HOH HOH . 
F 5 HOH A 121 721 93 HOH HOH . 
F 5 HOH A 122 722 19 HOH HOH . 
F 5 HOH A 123 723 3 HOH HOH . 
F 5 HOH A 124 724 17 HOH HOH . 
F 5 HOH A 125 725 109 HOH HOH . 
F 5 HOH A 126 726 110 HOH HOH . 
F 5 HOH A 127 727 137 HOH HOH . 
F 5 HOH A 128 728 113 HOH HOH . 
F 5 HOH A 129 729 94 HOH HOH . 
F 5 HOH A 130 730 101 HOH HOH . 
F 5 HOH A 131 731 132 HOH HOH . 
F 5 HOH A 132 732 106 HOH HOH . 
F 5 HOH A 133 733 134 HOH HOH . 
F 5 HOH A 134 734 103 HOH HOH . 
F 5 HOH A 135 735 107 HOH HOH . 
F 5 HOH A 136 736 117 HOH HOH . 
F 5 HOH A 137 737 139 HOH HOH . 
F 5 HOH A 138 738 125 HOH HOH . 
F 5 HOH A 139 739 112 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . C 3 6.636 56.252 21.388 1 58.61 ? PG ATP 502 A 1 
HETATM 2 O O1G ATP . . . C 3 6.548 57.328 20.328 1 51.45 ? O1G ATP 502 A 1 
HETATM 3 O O2G ATP . . . C 3 5.509 55.249 21.252 1 64.05 ? O2G ATP 502 A 1 
HETATM 4 O O3G ATP . . . C 3 7.991 55.584 21.566 1 58.08 ? O3G ATP 502 A 1 
HETATM 5 P PB ATP . . . C 3 6.617 56.636 24.337 1 43.12 ? PB ATP 502 A 1 
HETATM 6 O O1B ATP . . . C 3 6.093 55.235 24.507 1 47.12 ? O1B ATP 502 A 1 
HETATM 7 O O2B ATP . . . C 3 6.097 57.778 25.159 1 35.49 ? O2B ATP 502 A 1 
HETATM 8 O O3B ATP . . . C 3 6.418 57.103 22.775 1 64.01 ? O3B ATP 502 A 1 
HETATM 9 P PA ATP . . . C 3 9.231 56.945 25.639 1 46.69 ? PA ATP 502 A 1 
HETATM 10 O O1A ATP . . . C 3 9.772 55.684 26.264 1 49.13 ? O1A ATP 502 A 1 
HETATM 11 O O2A ATP . . . C 3 8.639 58.056 26.467 1 48.82 ? O2A ATP 502 A 1 
HETATM 12 O O3A ATP . . . C 3 8.226 56.548 24.444 1 46.55 ? O3A ATP 502 A 1 
HETATM 13 O O5' ATP . . . C 3 10.414 57.588 24.722 1 56.42 ? O5' ATP 502 A 1 
HETATM 14 C C5' ATP . . . C 3 10.155 58.252 23.47 1 37.27 ? C5' ATP 502 A 1 
HETATM 15 C C4' ATP . . . C 3 9.755 59.684 23.799 1 36.68 ? C4' ATP 502 A 1 
HETATM 16 O O4' ATP . . . C 3 10.775 60.307 24.561 1 35.21 ? O4' ATP 502 A 1 
HETATM 17 C C3' ATP . . . C 3 9.54 60.641 22.639 1 36.44 ? C3' ATP 502 A 1 
HETATM 18 O O3' ATP . . . C 3 8.195 60.531 22.171 1 34.4 ? O3' ATP 502 A 1 
HETATM 19 C C2' ATP . . . C 3 9.823 62.012 23.249 1 37.46 ? C2' ATP 502 A 1 
HETATM 20 O O2' ATP . . . C 3 8.596 62.639 23.645 1 25.25 ? O2' ATP 502 A 1 
HETATM 21 C C1' ATP . . . C 3 10.595 61.732 24.525 1 31.7 ? C1' ATP 502 A 1 
HETATM 22 N N9 ATP . . . C 3 11.961 62.316 24.613 1 32.22 ? N9 ATP 502 A 1 
HETATM 23 C C8 ATP . . . C 3 12.455 62.903 25.714 1 31.4 ? C8 ATP 502 A 1 
HETATM 24 N N7 ATP . . . C 3 13.731 63.303 25.518 1 37.93 ? N7 ATP 502 A 1 
HETATM 25 C C5 ATP . . . C 3 14.085 62.957 24.262 1 35.1 ? C5 ATP 502 A 1 
HETATM 26 C C6 ATP . . . C 3 15.301 63.084 23.417 1 36.74 ? C6 ATP 502 A 1 
HETATM 27 N N6 ATP . . . C 3 16.433 63.669 23.876 1 35.34 ? N6 ATP 502 A 1 
HETATM 28 N N1 ATP . . . C 3 15.254 62.59 22.162 1 43.13 ? N1 ATP 502 A 1 
HETATM 29 C C2 ATP . . . C 3 14.142 62.002 21.688 1 41.04 ? C2 ATP 502 A 1 
HETATM 30 N N3 ATP . . . C 3 13.009 61.849 22.402 1 35.72 ? N3 ATP 502 A 1 
HETATM 31 C C4 ATP . . . C 3 12.914 62.301 23.671 1 33.76 ? C4 ATP 502 A 1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#