data_6N1G # _model_server_result.job_id 48eWtJbCj23kIAX97Wfy8A _model_server_result.datetime_utc '2024-12-26 15:36:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n1g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 6N1G # _exptl.entry_id 6N1G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6N1G _cell.length_a 385.658 _cell.length_b 385.658 _cell.length_c 385.658 _cell.Z_PDB 384 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N1G _symmetry.cell_setting ? _symmetry.Int_Tables_number 210 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 41 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I 1 1,2 C,D,J,K,L,M,N,O,P 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 26_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6N1G _atom_sites.fract_transf_matrix[1][1] 0.002593 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002593 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002593 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GOL A 1 401 2 GOL GOL . F 2 GOL A 1 402 661 GOL GOL . G 2 GOL C 1 401 2 GOL GOL . H 2 GOL C 1 402 661 GOL GOL . I 2 GOL C 1 403 663 GOL GOL . J 2 GOL B 1 401 2 GOL GOL . K 2 GOL B 1 402 661 GOL GOL . L 2 GOL B 1 403 663 GOL GOL . M 2 GOL D 1 401 2 GOL GOL . N 2 GOL D 1 402 661 GOL GOL . O 2 GOL D 1 403 663 GOL GOL . P 2 GOL D 1 404 1 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 2 -13.174 17.998 -51.868 1 120.51 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . E 2 -14.071 18.406 -52.885 1 110.58 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . E 2 -13.296 19 -50.648 1 120.16 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . E 2 -14.429 18.742 -49.839 1 121.17 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . E 2 -11.933 18.839 -49.857 1 117.59 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . E 2 -11.014 19.814 -50.335 1 111.6 ? O3 GOL 401 A 1 HETATM 7 H H11 GOL . . . E 2 -12.254 17.988 -52.173 1 144.69 ? H11 GOL 401 A 1 HETATM 8 H H12 GOL . . . E 2 -13.361 17.1 -51.554 1 144.69 ? H12 GOL 401 A 1 HETATM 9 H HO1 GOL . . . E 2 -13.631 18.398 -53.613 1 132.78 ? HO1 GOL 401 A 1 HETATM 10 H H2 GOL . . . E 2 -13.411 19.909 -50.967 1 144.28 ? H2 GOL 401 A 1 HETATM 11 H HO2 GOL . . . E 2 -14.496 19.374 -49.275 1 145.49 ? HO2 GOL 401 A 1 HETATM 12 H H31 GOL . . . E 2 -11.617 17.93 -49.975 1 141.19 ? H31 GOL 401 A 1 HETATM 13 H H32 GOL . . . E 2 -12.118 18.925 -48.909 1 141.19 ? H32 GOL 401 A 1 HETATM 14 H HO3 GOL . . . E 2 -10.388 19.86 -49.762 1 134.01 ? HO3 GOL 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #