data_6N1S # _model_server_result.job_id ppwFo0rt8HoEV9X5WLUCPA _model_server_result.datetime_utc '2024-11-27 21:54:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n1s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 6N1S # _exptl.entry_id 6N1S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6N1S _cell.length_a 53.689 _cell.length_b 145.522 _cell.length_c 175.922 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N1S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 356 n n PA O2A NDP sing 357 n n PA O5B NDP sing 358 n n PA O3 NDP sing 359 n n O2A HOA2 NDP sing 360 n n O5B C5B NDP sing 361 n n C5B C4B NDP sing 362 n n C5B H51A NDP sing 363 n n C5B H52A NDP sing 364 n n C4B O4B NDP sing 365 n n C4B C3B NDP sing 366 n n C4B H4B NDP sing 367 n n O4B C1B NDP sing 368 n n C3B O3B NDP sing 369 n n C3B C2B NDP sing 370 n n C3B H3B NDP sing 371 n n O3B HO3A NDP sing 372 n n C2B O2B NDP sing 373 n n C2B C1B NDP sing 374 n n C2B H2B NDP sing 375 n n O2B P2B NDP sing 376 n n C1B N9A NDP sing 377 n n C1B H1B NDP sing 378 n n N9A C8A NDP sing 379 n y N9A C4A NDP sing 380 n y C8A N7A NDP doub 381 n y C8A H8A NDP sing 382 n n N7A C5A NDP sing 383 n y C5A C6A NDP sing 384 n y C5A C4A NDP doub 385 n y C6A N6A NDP sing 386 n n C6A N1A NDP doub 387 n y N6A H61A NDP sing 388 n n N6A H62A NDP sing 389 n n N1A C2A NDP sing 390 n y C2A N3A NDP doub 391 n y C2A H2A NDP sing 392 n n N3A C4A NDP sing 393 n y O3 PN NDP sing 394 n n PN O1N NDP doub 395 n n PN O2N NDP sing 396 n n PN O5D NDP sing 397 n n O2N H21N NDP sing 398 n n O5D C5D NDP sing 399 n n C5D C4D NDP sing 400 n n C5D H51N NDP sing 401 n n C5D H52N NDP sing 402 n n C4D O4D NDP sing 403 n n C4D C3D NDP sing 404 n n C4D H4D NDP sing 405 n n O4D C1D NDP sing 406 n n C3D O3D NDP sing 407 n n C3D C2D NDP sing 408 n n C3D H3D NDP sing 409 n n O3D HO3N NDP sing 410 n n C2D O2D NDP sing 411 n n C2D C1D NDP sing 412 n n C2D H2D NDP sing 413 n n O2D HO2N NDP sing 414 n n C1D N1N NDP sing 415 n n C1D H1D NDP sing 416 n n N1N C2N NDP sing 417 n n N1N C6N NDP sing 418 n n C2N C3N NDP doub 419 n n C2N H2N NDP sing 420 n n C3N C7N NDP sing 421 n n C3N C4N NDP sing 422 n n C7N O7N NDP doub 423 n n C7N N7N NDP sing 424 n n N7N H71N NDP sing 425 n n N7N H72N NDP sing 426 n n C4N C5N NDP sing 427 n n C4N H41N NDP sing 428 n n C4N H42N NDP sing 429 n n C5N C6N NDP doub 430 n n C5N H5N NDP sing 431 n n C6N H6N NDP sing 432 n n P2B O1X NDP doub 433 n n P2B O2X NDP sing 434 n n P2B O3X NDP sing 435 n n O2X HOP2 NDP sing 436 n n O3X HOP3 NDP sing 437 n n # _atom_sites.entry_id 6N1S _atom_sites.fract_transf_matrix[1][1] 0.018626 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006872 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005684 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UMP A 1 701 701 UMP UMP . D 3 NDP A 1 702 702 NDP NDP . E 4 CB3 A 1 703 703 CB3 CB3 . F 5 K9A A 1 704 1 K9A K9A . G 6 EDO A 1 705 1 EDO EDO . H 2 UMP B 1 701 701 UMP UMP . I 3 NDP B 1 702 702 NDP NDP . J 4 CB3 B 1 703 703 CB3 CB3 . K 5 K9A B 1 704 2 K9A K9A . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . D 3 27.316 109.014 -77.383 1 34.84 ? PA NDP 702 A 1 HETATM 2 O O1A NDP . . . D 3 28.092 107.756 -77.562 1 34.95 ? O1A NDP 702 A 1 HETATM 3 O O2A NDP . . . D 3 25.849 108.926 -77.11 1 34.33 ? O2A NDP 702 A 1 HETATM 4 O O5B NDP . . . D 3 27.579 109.965 -78.639 1 36.17 ? O5B NDP 702 A 1 HETATM 5 C C5B NDP . . . D 3 27.038 111.307 -78.624 1 37.36 ? C5B NDP 702 A 1 HETATM 6 C C4B NDP . . . D 3 27.04 111.831 -80.036 1 38.19 ? C4B NDP 702 A 1 HETATM 7 O O4B NDP . . . D 3 26.543 110.79 -80.919 1 39.44 ? O4B NDP 702 A 1 HETATM 8 C C3B NDP . . . D 3 26.155 113.051 -80.323 1 38.65 ? C3B NDP 702 A 1 HETATM 9 O O3B NDP . . . D 3 26.825 114.27 -80.031 1 38.18 ? O3B NDP 702 A 1 HETATM 10 C C2B NDP . . . D 3 25.887 112.83 -81.803 1 39.44 ? C2B NDP 702 A 1 HETATM 11 O O2B NDP . . . D 3 27.067 113.014 -82.587 1 38.49 ? O2B NDP 702 A 1 HETATM 12 C C1B NDP . . . D 3 25.583 111.339 -81.793 1 40.51 ? C1B NDP 702 A 1 HETATM 13 N N9A NDP . . . D 3 24.252 110.984 -81.312 1 42.32 ? N9A NDP 702 A 1 HETATM 14 C C8A NDP . . . D 3 23.948 110.253 -80.189 1 42.74 ? C8A NDP 702 A 1 HETATM 15 N N7A NDP . . . D 3 22.663 110.076 -80.013 1 43.03 ? N7A NDP 702 A 1 HETATM 16 C C5A NDP . . . D 3 22.078 110.722 -81.091 1 43.84 ? C5A NDP 702 A 1 HETATM 17 C C6A NDP . . . D 3 20.734 110.891 -81.476 1 44.25 ? C6A NDP 702 A 1 HETATM 18 N N6A NDP . . . D 3 19.706 110.394 -80.793 1 44.98 ? N6A NDP 702 A 1 HETATM 19 N N1A NDP . . . D 3 20.492 111.591 -82.611 1 44.4 ? N1A NDP 702 A 1 HETATM 20 C C2A NDP . . . D 3 21.535 112.079 -83.297 1 43.73 ? C2A NDP 702 A 1 HETATM 21 N N3A NDP . . . D 3 22.836 111.984 -83.032 1 43.16 ? N3A NDP 702 A 1 HETATM 22 C C4A NDP . . . D 3 23.047 111.286 -81.902 1 43.4 ? C4A NDP 702 A 1 HETATM 23 O O3 NDP . . . D 3 28.001 109.878 -76.227 1 34.79 ? O3 NDP 702 A 1 HETATM 24 P PN NDP . . . D 3 27.942 109.67 -74.644 1 35.57 ? PN NDP 702 A 1 HETATM 25 O O1N NDP . . . D 3 28.769 110.732 -73.998 1 36.89 ? O1N NDP 702 A 1 HETATM 26 O O2N NDP . . . D 3 26.511 109.519 -74.245 1 35.61 ? O2N NDP 702 A 1 HETATM 27 O O5D NDP . . . D 3 28.684 108.256 -74.509 1 34.88 ? O5D NDP 702 A 1 HETATM 28 C C5D NDP . . . D 3 30.132 108.216 -74.442 1 34.4 ? C5D NDP 702 A 1 HETATM 29 C C4D NDP . . . D 3 30.544 107.909 -73.025 1 33.89 ? C4D NDP 702 A 1 HETATM 30 O O4D NDP . . . D 3 29.913 106.668 -72.625 1 33.5 ? O4D NDP 702 A 1 HETATM 31 C C3D NDP . . . D 3 32.047 107.703 -72.786 1 33.92 ? C3D NDP 702 A 1 HETATM 32 O O3D NDP . . . D 3 32.428 108.139 -71.486 1 33.4 ? O3D NDP 702 A 1 HETATM 33 C C2D NDP . . . D 3 32.174 106.19 -72.933 1 33.74 ? C2D NDP 702 A 1 HETATM 34 O O2D NDP . . . D 3 33.331 105.657 -72.304 1 34.67 ? O2D NDP 702 A 1 HETATM 35 C C1D NDP . . . D 3 30.896 105.742 -72.233 1 33.05 ? C1D NDP 702 A 1 HETATM 36 N N1N NDP . . . D 3 30.461 104.376 -72.633 1 31.61 ? N1N NDP 702 A 1 HETATM 37 C C2N NDP . . . D 3 30.448 103.361 -71.716 1 31.27 ? C2N NDP 702 A 1 HETATM 38 C C3N NDP . . . D 3 29.613 102.288 -71.857 1 31.04 ? C3N NDP 702 A 1 HETATM 39 C C7N NDP . . . D 3 29.454 101.346 -70.721 1 30.67 ? C7N NDP 702 A 1 HETATM 40 O O7N NDP . . . D 3 28.767 100.333 -70.877 1 30.44 ? O7N NDP 702 A 1 HETATM 41 N N7N NDP . . . D 3 30.057 101.603 -69.568 1 30.03 ? N7N NDP 702 A 1 HETATM 42 C C4N NDP . . . D 3 28.917 102.123 -73.162 1 30.98 ? C4N NDP 702 A 1 HETATM 43 C C5N NDP . . . D 3 29.466 102.989 -74.223 1 30.87 ? C5N NDP 702 A 1 HETATM 44 C C6N NDP . . . D 3 30.075 104.113 -73.925 1 30.96 ? C6N NDP 702 A 1 HETATM 45 P P2B NDP . . . D 3 27.204 114.425 -83.34 1 37.51 ? P2B NDP 702 A 1 HETATM 46 O O1X NDP . . . D 3 27.226 115.485 -82.258 1 37.94 ? O1X NDP 702 A 1 HETATM 47 O O2X NDP . . . D 3 28.523 114.34 -84.085 1 37.84 ? O2X NDP 702 A 1 HETATM 48 O O3X NDP . . . D 3 26.021 114.571 -84.28 1 37.36 ? O3X NDP 702 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #