data_6N1S
#
_model_server_result.job_id            DdpoQlIS2WaBl9DmiAhp4Q 
_model_server_result.datetime_utc      '2024-11-27 22:04:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6n1s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":703}' 
#
_entry.id    6N1S 
#
_exptl.entry_id    6N1S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              477.469 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '10-PROPARGYL-5,8-DIDEAZAFOLIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6N1S 
_cell.length_a            53.689 
_cell.length_b            145.522 
_cell.length_c            175.922 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6N1S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 J N N 
#
_chem_comp.formula           'C24 H23 N5 O6' 
_chem_comp.formula_weight    477.469 
_chem_comp.id                CB3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '10-PROPARGYL-5,8-DIDEAZAFOLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 CB3 sing 70 n y 
N1 C8A CB3 sing 71 n y 
N1 HN1 CB3 sing 72 n n 
C2 NA2 CB3 sing 73 n n 
C2 N3 CB3 doub 74 n y 
NA2 HN21 CB3 sing 75 n n 
NA2 HN22 CB3 sing 76 n n 
N3 C4 CB3 sing 77 n y 
C4 O4 CB3 doub 78 n n 
C4 C4A CB3 sing 79 n y 
C4A C5 CB3 doub 80 n y 
C4A C8A CB3 sing 81 n y 
C5 C6 CB3 sing 82 n y 
C5 H5 CB3 sing 83 n n 
C6 C7 CB3 doub 84 n y 
C6 C9 CB3 sing 85 n n 
C7 C8 CB3 sing 86 n y 
C7 H7 CB3 sing 87 n n 
C8 C8A CB3 doub 88 n y 
C8 H8 CB3 sing 89 n n 
C9 N10 CB3 sing 90 n n 
C9 H91 CB3 sing 91 n n 
C9 H92 CB3 sing 92 n n 
N10 C14 CB3 sing 93 n n 
N10 CP1 CB3 sing 94 n n 
C11 C12 CB3 doub 95 n y 
C11 C16 CB3 sing 96 n y 
C11 C CB3 sing 97 n n 
C12 C13 CB3 sing 98 n y 
C12 H12 CB3 sing 99 n n 
C13 C14 CB3 doub 100 n y 
C13 H13 CB3 sing 101 n n 
C14 C15 CB3 sing 102 n y 
C15 C16 CB3 doub 103 n y 
C15 H15 CB3 sing 104 n n 
C16 H16 CB3 sing 105 n n 
C O CB3 doub 106 n n 
C N CB3 sing 107 n n 
N CA CB3 sing 108 n n 
N HN CB3 sing 109 n n 
CA CB CB3 sing 110 n n 
CA CT CB3 sing 111 n n 
CA HA CB3 sing 112 n n 
CB CG CB3 sing 113 n n 
CB HB1 CB3 sing 114 n n 
CB HB2 CB3 sing 115 n n 
CG CD CB3 sing 116 n n 
CG HG1 CB3 sing 117 n n 
CG HG2 CB3 sing 118 n n 
CD OE1 CB3 doub 119 n n 
CD OE2 CB3 sing 120 n n 
OE2 HOE2 CB3 sing 121 n n 
CT O1 CB3 doub 122 n n 
CT O2 CB3 sing 123 n n 
O2 HO2 CB3 sing 124 n n 
CP1 CP2 CB3 sing 125 n n 
CP1 HP11 CB3 sing 126 n n 
CP1 HP12 CB3 sing 127 n n 
CP2 CP3 CB3 trip 128 n n 
CP3 HP3 CB3 sing 129 n n 
#
_atom_sites.entry_id                     6N1S 
_atom_sites.fract_transf_matrix[1][1]    0.018626 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006872 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005684 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UMP A 1 701 701 UMP UMP . 
D 3 NDP A 1 702 702 NDP NDP . 
E 4 CB3 A 1 703 703 CB3 CB3 . 
F 5 K9A A 1 704 1 K9A K9A . 
G 6 EDO A 1 705 1 EDO EDO . 
H 2 UMP B 1 701 701 UMP UMP . 
I 3 NDP B 1 702 702 NDP NDP . 
J 4 CB3 B 1 703 703 CB3 CB3 . 
K 5 K9A B 1 704 2 K9A K9A . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 CB3 . . . J 4 42.038 53.832 -41.579 0.5 15.34 ? N1 CB3 703 B 1 
HETATM 2 C C2 CB3 . . . J 4 41.917 54.203 -42.889 0.5 15.23 ? C2 CB3 703 B 1 
HETATM 3 N NA2 CB3 . . . J 4 42.948 54.825 -43.458 0.5 15.08 ? NA2 CB3 703 B 1 
HETATM 4 N N3 CB3 . . . J 4 40.813 53.977 -43.597 0.5 15.34 ? N3 CB3 703 B 1 
HETATM 5 C C4 CB3 . . . J 4 39.757 53.342 -43.009 0.5 15.34 ? C4 CB3 703 B 1 
HETATM 6 O O4 CB3 . . . J 4 38.749 53.147 -43.701 0.5 15.15 ? O4 CB3 703 B 1 
HETATM 7 C C4A CB3 . . . J 4 39.83 52.907 -41.609 0.5 15.44 ? C4A CB3 703 B 1 
HETATM 8 C C5 CB3 . . . J 4 38.785 52.246 -40.952 0.5 15.62 ? C5 CB3 703 B 1 
HETATM 9 C C6 CB3 . . . J 4 38.905 51.853 -39.65 0.5 15.84 ? C6 CB3 703 B 1 
HETATM 10 C C7 CB3 . . . J 4 40.11 52.134 -38.958 0.5 15.64 ? C7 CB3 703 B 1 
HETATM 11 C C8 CB3 . . . J 4 41.144 52.786 -39.578 0.5 15.55 ? C8 CB3 703 B 1 
HETATM 12 C C8A CB3 . . . J 4 41.016 53.177 -40.912 0.5 15.42 ? C8A CB3 703 B 1 
HETATM 13 C C9 CB3 . . . J 4 37.782 51.128 -38.949 0.5 16.08 ? C9 CB3 703 B 1 
HETATM 14 N N10 CB3 . . . J 4 36.902 50.384 -39.849 0.5 16.38 ? N10 CB3 703 B 1 
HETATM 15 C C11 CB3 . . . J 4 38.36 47.533 -42.573 0.5 18.06 ? C11 CB3 703 B 1 
HETATM 16 C C12 CB3 . . . J 4 37.031 47.94 -42.62 0.5 17.64 ? C12 CB3 703 B 1 
HETATM 17 C C13 CB3 . . . J 4 36.546 48.875 -41.726 0.5 17.27 ? C13 CB3 703 B 1 
HETATM 18 C C14 CB3 . . . J 4 37.383 49.452 -40.748 0.5 17 ? C14 CB3 703 B 1 
HETATM 19 C C15 CB3 . . . J 4 38.728 49.036 -40.721 0.5 17.31 ? C15 CB3 703 B 1 
HETATM 20 C C16 CB3 . . . J 4 39.198 48.1 -41.618 0.5 17.65 ? C16 CB3 703 B 1 
HETATM 21 C C CB3 . . . J 4 38.976 46.535 -43.516 0.5 18.92 ? C CB3 703 B 1 
HETATM 22 O O CB3 . . . J 4 40.186 46.322 -43.478 0.5 19.17 ? O CB3 703 B 1 
HETATM 23 N N CB3 . . . J 4 38.198 45.974 -44.45 0.5 19.82 ? N CB3 703 B 1 
HETATM 24 C CA CB3 . . . J 4 36.918 45.345 -44.159 0.5 20.71 ? CA CB3 703 B 1 
HETATM 25 C CB CB3 . . . J 4 35.908 45.615 -45.283 0.5 21 ? CB CB3 703 B 1 
HETATM 26 C CG CB3 . . . J 4 34.687 46.398 -44.825 0.5 21.25 ? CG CB3 703 B 1 
HETATM 27 C CD CB3 . . . J 4 33.938 47.122 -45.933 0.5 21.44 ? CD CB3 703 B 1 
HETATM 28 O OE1 CB3 . . . J 4 33.376 46.436 -46.808 0.5 21.69 ? OE1 CB3 703 B 1 
HETATM 29 O OE2 CB3 . . . J 4 33.915 48.371 -45.918 0.5 21.27 ? OE2 CB3 703 B 1 
HETATM 30 C CT CB3 . . . J 4 37.134 43.836 -43.938 0.5 21.21 ? CT CB3 703 B 1 
HETATM 31 O O1 CB3 . . . J 4 38.24 43.483 -43.475 0.5 21.42 ? O1 CB3 703 B 1 
HETATM 32 O O2 CB3 . . . J 4 36.198 43.062 -44.247 0.5 21.44 ? O2 CB3 703 B 1 
HETATM 33 C CP1 CB3 . . . J 4 35.484 50.675 -39.752 0.5 16.23 ? CP1 CB3 703 B 1 
HETATM 34 C CP2 CB3 . . . J 4 35.127 51.89 -40.491 0.5 16.1 ? CP2 CB3 703 B 1 
HETATM 35 C CP3 CB3 . . . J 4 34.795 52.841 -41.101 0.5 16.09 ? CP3 CB3 703 B 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           35 
#