data_6N1S # _model_server_result.job_id pKcK-bSx-N5KHlxiKlWvCw _model_server_result.datetime_utc '2024-10-12 07:33:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n1s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":704}' # _entry.id 6N1S # _exptl.entry_id 6N1S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 362.432 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-{4-[3-(2-methylpyrimidin-5-yl)phenyl]piperazin-1-yl}pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6N1S _cell.length_a 53.689 _cell.length_b 145.522 _cell.length_c 175.922 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N1S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 K N N # _chem_comp.formula 'C19 H22 N8' _chem_comp.formula_weight 362.432 _chem_comp.id K9A _chem_comp.mon_nstd_flag . _chem_comp.name 5-{4-[3-(2-methylpyrimidin-5-yl)phenyl]piperazin-1-yl}pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 K9A doub 240 n y C7 C6 K9A sing 241 n y C8 C9 K9A sing 242 n y C11 C12 K9A sing 243 n n C11 N2 K9A sing 244 n n C6 C5 K9A doub 245 n y C9 N2 K9A sing 246 n n C9 C10 K9A doub 247 n y C12 N3 K9A sing 248 n n N2 C14 K9A sing 249 n n C5 C10 K9A sing 250 n y C5 C3 K9A sing 251 n n C14 C13 K9A sing 252 n n N6 C18 K9A sing 253 n n C2 C3 K9A doub 254 n y C2 N K9A sing 255 n y N3 C13 K9A sing 256 n n N3 C15 K9A sing 257 n n C3 C4 K9A sing 258 n y C18 C15 K9A doub 259 n y C18 N5 K9A sing 260 n y C15 C16 K9A sing 261 n y N C1 K9A doub 262 n y C4 N1 K9A doub 263 n y N5 C17 K9A doub 264 n y C16 N4 K9A doub 265 n y C1 N1 K9A sing 266 n y C1 C K9A sing 267 n n C17 N4 K9A sing 268 n y C17 N7 K9A sing 269 n n N7 H1 K9A sing 270 n n N7 H2 K9A sing 271 n n C16 H3 K9A sing 272 n n N6 H4 K9A sing 273 n n N6 H5 K9A sing 274 n n C12 H6 K9A sing 275 n n C12 H7 K9A sing 276 n n C11 H8 K9A sing 277 n n C11 H9 K9A sing 278 n n C13 H10 K9A sing 279 n n C13 H11 K9A sing 280 n n C14 H12 K9A sing 281 n n C14 H13 K9A sing 282 n n C8 H14 K9A sing 283 n n C7 H15 K9A sing 284 n n C6 H16 K9A sing 285 n n C10 H17 K9A sing 286 n n C2 H18 K9A sing 287 n n C4 H19 K9A sing 288 n n C H20 K9A sing 289 n n C H21 K9A sing 290 n n C H22 K9A sing 291 n n # _atom_sites.entry_id 6N1S _atom_sites.fract_transf_matrix[1][1] 0.018626 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006872 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005684 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UMP A 1 701 701 UMP UMP . D 3 NDP A 1 702 702 NDP NDP . E 4 CB3 A 1 703 703 CB3 CB3 . F 5 K9A A 1 704 1 K9A K9A . G 6 EDO A 1 705 1 EDO EDO . H 2 UMP B 1 701 701 UMP UMP . I 3 NDP B 1 702 702 NDP NDP . J 4 CB3 B 1 703 703 CB3 CB3 . K 5 K9A B 1 704 2 K9A K9A . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N7 K9A . . . F 5 29.153 95.63 -71.112 1 38 ? N7 K9A 704 A 1 HETATM 2 C C17 K9A . . . F 5 29.772 96.504 -71.89 1 38.03 ? C17 K9A 704 A 1 HETATM 3 N N4 K9A . . . F 5 31.076 96.744 -71.69 1 38.39 ? N4 K9A 704 A 1 HETATM 4 C C16 K9A . . . F 5 31.756 97.662 -72.501 1 39.36 ? C16 K9A 704 A 1 HETATM 5 N N5 K9A . . . F 5 29.093 97.14 -72.864 1 38.63 ? N5 K9A 704 A 1 HETATM 6 C C18 K9A . . . F 5 29.703 98.035 -73.667 1 39.72 ? C18 K9A 704 A 1 HETATM 7 N N6 K9A . . . F 5 29.028 98.664 -74.632 1 39.44 ? N6 K9A 704 A 1 HETATM 8 C C15 K9A . . . F 5 31.069 98.316 -73.523 1 40.67 ? C15 K9A 704 A 1 HETATM 9 N N3 K9A . . . F 5 31.738 99.216 -74.276 1 42.88 ? N3 K9A 704 A 1 HETATM 10 C C12 K9A . . . F 5 32.057 99.006 -75.742 1 43.82 ? C12 K9A 704 A 1 HETATM 11 C C11 K9A . . . F 5 32.925 100.198 -76.112 1 44.74 ? C11 K9A 704 A 1 HETATM 12 C C13 K9A . . . F 5 32.208 100.447 -73.568 1 43.71 ? C13 K9A 704 A 1 HETATM 13 C C14 K9A . . . F 5 33.7 100.653 -73.826 1 44.64 ? C14 K9A 704 A 1 HETATM 14 N N2 K9A . . . F 5 34.04 100.163 -75.188 1 45.44 ? N2 K9A 704 A 1 HETATM 15 C C9 K9A . . . F 5 35.253 99.645 -75.485 1 47.5 ? C9 K9A 704 A 1 HETATM 16 C C8 K9A . . . F 5 35.48 98.912 -76.651 1 48.04 ? C8 K9A 704 A 1 HETATM 17 C C7 K9A . . . F 5 36.741 98.383 -76.908 1 49.14 ? C7 K9A 704 A 1 HETATM 18 C C6 K9A . . . F 5 37.784 98.571 -76.004 1 51.25 ? C6 K9A 704 A 1 HETATM 19 C C10 K9A . . . F 5 36.307 99.82 -74.588 1 49.87 ? C10 K9A 704 A 1 HETATM 20 C C5 K9A . . . F 5 37.574 99.297 -74.829 1 52.79 ? C5 K9A 704 A 1 HETATM 21 C C3 K9A . . . F 5 38.599 99.51 -73.89 1 56.81 ? C3 K9A 704 A 1 HETATM 22 C C2 K9A . . . F 5 39.532 98.511 -73.592 1 58.64 ? C2 K9A 704 A 1 HETATM 23 N N K9A . . . F 5 40.546 98.756 -72.641 1 60.06 ? N K9A 704 A 1 HETATM 24 C C4 K9A . . . F 5 38.716 100.73 -73.212 1 58.02 ? C4 K9A 704 A 1 HETATM 25 N N1 K9A . . . F 5 39.743 100.919 -72.271 1 59.69 ? N1 K9A 704 A 1 HETATM 26 C C1 K9A . . . F 5 40.629 99.941 -72.006 1 61.08 ? C1 K9A 704 A 1 HETATM 27 C C K9A . . . F 5 41.643 100.159 -71.071 1 61.5 ? C K9A 704 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #