data_6N1S # _model_server_result.job_id Xl1wEqsA-h0nqxsocKzg9A _model_server_result.datetime_utc '2024-11-24 05:04:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n1s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":704}' # _entry.id 6N1S # _exptl.entry_id 6N1S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 362.432 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-{4-[3-(2-methylpyrimidin-5-yl)phenyl]piperazin-1-yl}pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6N1S _cell.length_a 53.689 _cell.length_b 145.522 _cell.length_c 175.922 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N1S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 K N N # _chem_comp.formula 'C19 H22 N8' _chem_comp.formula_weight 362.432 _chem_comp.id K9A _chem_comp.mon_nstd_flag . _chem_comp.name 5-{4-[3-(2-methylpyrimidin-5-yl)phenyl]piperazin-1-yl}pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 K9A doub 240 n y C7 C6 K9A sing 241 n y C8 C9 K9A sing 242 n y C11 C12 K9A sing 243 n n C11 N2 K9A sing 244 n n C6 C5 K9A doub 245 n y C9 N2 K9A sing 246 n n C9 C10 K9A doub 247 n y C12 N3 K9A sing 248 n n N2 C14 K9A sing 249 n n C5 C10 K9A sing 250 n y C5 C3 K9A sing 251 n n C14 C13 K9A sing 252 n n N6 C18 K9A sing 253 n n C2 C3 K9A doub 254 n y C2 N K9A sing 255 n y N3 C13 K9A sing 256 n n N3 C15 K9A sing 257 n n C3 C4 K9A sing 258 n y C18 C15 K9A doub 259 n y C18 N5 K9A sing 260 n y C15 C16 K9A sing 261 n y N C1 K9A doub 262 n y C4 N1 K9A doub 263 n y N5 C17 K9A doub 264 n y C16 N4 K9A doub 265 n y C1 N1 K9A sing 266 n y C1 C K9A sing 267 n n C17 N4 K9A sing 268 n y C17 N7 K9A sing 269 n n N7 H1 K9A sing 270 n n N7 H2 K9A sing 271 n n C16 H3 K9A sing 272 n n N6 H4 K9A sing 273 n n N6 H5 K9A sing 274 n n C12 H6 K9A sing 275 n n C12 H7 K9A sing 276 n n C11 H8 K9A sing 277 n n C11 H9 K9A sing 278 n n C13 H10 K9A sing 279 n n C13 H11 K9A sing 280 n n C14 H12 K9A sing 281 n n C14 H13 K9A sing 282 n n C8 H14 K9A sing 283 n n C7 H15 K9A sing 284 n n C6 H16 K9A sing 285 n n C10 H17 K9A sing 286 n n C2 H18 K9A sing 287 n n C4 H19 K9A sing 288 n n C H20 K9A sing 289 n n C H21 K9A sing 290 n n C H22 K9A sing 291 n n # _atom_sites.entry_id 6N1S _atom_sites.fract_transf_matrix[1][1] 0.018626 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006872 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005684 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UMP A 1 701 701 UMP UMP . D 3 NDP A 1 702 702 NDP NDP . E 4 CB3 A 1 703 703 CB3 CB3 . F 5 K9A A 1 704 1 K9A K9A . G 6 EDO A 1 705 1 EDO EDO . H 2 UMP B 1 701 701 UMP UMP . I 3 NDP B 1 702 702 NDP NDP . J 4 CB3 B 1 703 703 CB3 CB3 . K 5 K9A B 1 704 2 K9A K9A . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N7 K9A . . . K 5 6.42 42.365 -62.167 1 50.14 ? N7 K9A 704 B 1 HETATM 2 C C17 K9A . . . K 5 5.416 41.506 -62.309 1 50.63 ? C17 K9A 704 B 1 HETATM 3 N N4 K9A . . . K 5 4.593 41.297 -61.277 1 51.39 ? N4 K9A 704 B 1 HETATM 4 C C16 K9A . . . K 5 3.527 40.406 -61.4 1 53.24 ? C16 K9A 704 B 1 HETATM 5 N N5 K9A . . . K 5 5.226 40.853 -63.471 1 51.59 ? N5 K9A 704 B 1 HETATM 6 C C18 K9A . . . K 5 4.215 39.976 -63.639 1 53.33 ? C18 K9A 704 B 1 HETATM 7 N N6 K9A . . . K 5 4.039 39.342 -64.8 1 52.82 ? N6 K9A 704 B 1 HETATM 8 C C15 K9A . . . K 5 3.307 39.736 -62.605 1 55.18 ? C15 K9A 704 B 1 HETATM 9 N N3 K9A . . . K 5 2.283 38.854 -62.657 1 59.68 ? N3 K9A 704 B 1 HETATM 10 C C12 K9A . . . K 5 1.066 38.921 -63.576 1 61.33 ? C12 K9A 704 B 1 HETATM 11 C C11 K9A . . . K 5 0.198 37.767 -63.073 1 63 ? C11 K9A 704 B 1 HETATM 12 C C13 K9A . . . K 5 2.369 37.774 -61.62 1 62.2 ? C13 K9A 704 B 1 HETATM 13 C C14 K9A . . . K 5 1.094 37.781 -60.784 1 63.13 ? C14 K9A 704 B 1 HETATM 14 N N2 K9A . . . K 5 -0.068 38.032 -61.669 1 64.73 ? N2 K9A 704 B 1 HETATM 15 C C9 K9A . . . K 5 -1.202 38.552 -61.155 1 68.04 ? C9 K9A 704 B 1 HETATM 16 C C8 K9A . . . K 5 -2.113 39.256 -61.944 1 68.98 ? C8 K9A 704 B 1 HETATM 17 C C7 K9A . . . K 5 -3.26 39.795 -61.359 1 69.62 ? C7 K9A 704 B 1 HETATM 18 C C6 K9A . . . K 5 -3.497 39.644 -59.991 1 70.41 ? C6 K9A 704 B 1 HETATM 19 C C10 K9A . . . K 5 -1.45 38.414 -59.782 1 69.76 ? C10 K9A 704 B 1 HETATM 20 C C5 K9A . . . K 5 -2.588 38.951 -59.188 1 71.04 ? C5 K9A 704 B 1 HETATM 21 C C3 K9A . . . K 5 -2.805 38.781 -57.813 1 72.71 ? C3 K9A 704 B 1 HETATM 22 C C2 K9A . . . K 5 -3.24 39.841 -57.015 1 73.35 ? C2 K9A 704 B 1 HETATM 23 N N K9A . . . K 5 -3.458 39.641 -55.636 1 73.71 ? N K9A 704 B 1 HETATM 24 C C4 K9A . . . K 5 -2.596 37.543 -57.195 1 72.95 ? C4 K9A 704 B 1 HETATM 25 N N1 K9A . . . K 5 -2.824 37.397 -55.812 1 73.58 ? N1 K9A 704 B 1 HETATM 26 C C1 K9A . . . K 5 -3.247 38.439 -55.067 1 74.28 ? C1 K9A 704 B 1 HETATM 27 C C K9A . . . K 5 -3.469 38.278 -53.7 1 73.67 ? C K9A 704 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #