data_6N1T
#
_model_server_result.job_id            namSHyiWXl8aBfh6wdPc6g 
_model_server_result.datetime_utc      '2024-11-12 23:30:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6n1t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":703}' 
#
_entry.id    6N1T 
#
_exptl.entry_id    6N1T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              477.469 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '10-PROPARGYL-5,8-DIDEAZAFOLIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6N1T 
_cell.length_a            53.209 
_cell.length_b            144.343 
_cell.length_c            174.189 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6N1T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 I N N 
#
_chem_comp.formula           'C24 H23 N5 O6' 
_chem_comp.formula_weight    477.469 
_chem_comp.id                CB3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '10-PROPARGYL-5,8-DIDEAZAFOLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 CB3 sing 123 n y 
N1 C8A CB3 sing 124 n y 
N1 HN1 CB3 sing 125 n n 
C2 NA2 CB3 sing 126 n n 
C2 N3 CB3 doub 127 n y 
NA2 HN21 CB3 sing 128 n n 
NA2 HN22 CB3 sing 129 n n 
N3 C4 CB3 sing 130 n y 
C4 O4 CB3 doub 131 n n 
C4 C4A CB3 sing 132 n y 
C4A C5 CB3 doub 133 n y 
C4A C8A CB3 sing 134 n y 
C5 C6 CB3 sing 135 n y 
C5 H5 CB3 sing 136 n n 
C6 C7 CB3 doub 137 n y 
C6 C9 CB3 sing 138 n n 
C7 C8 CB3 sing 139 n y 
C7 H7 CB3 sing 140 n n 
C8 C8A CB3 doub 141 n y 
C8 H8 CB3 sing 142 n n 
C9 N10 CB3 sing 143 n n 
C9 H91 CB3 sing 144 n n 
C9 H92 CB3 sing 145 n n 
N10 C14 CB3 sing 146 n n 
N10 CP1 CB3 sing 147 n n 
C11 C12 CB3 doub 148 n y 
C11 C16 CB3 sing 149 n y 
C11 C CB3 sing 150 n n 
C12 C13 CB3 sing 151 n y 
C12 H12 CB3 sing 152 n n 
C13 C14 CB3 doub 153 n y 
C13 H13 CB3 sing 154 n n 
C14 C15 CB3 sing 155 n y 
C15 C16 CB3 doub 156 n y 
C15 H15 CB3 sing 157 n n 
C16 H16 CB3 sing 158 n n 
C O CB3 doub 159 n n 
C N CB3 sing 160 n n 
N CA CB3 sing 161 n n 
N HN CB3 sing 162 n n 
CA CB CB3 sing 163 n n 
CA CT CB3 sing 164 n n 
CA HA CB3 sing 165 n n 
CB CG CB3 sing 166 n n 
CB HB1 CB3 sing 167 n n 
CB HB2 CB3 sing 168 n n 
CG CD CB3 sing 169 n n 
CG HG1 CB3 sing 170 n n 
CG HG2 CB3 sing 171 n n 
CD OE1 CB3 doub 172 n n 
CD OE2 CB3 sing 173 n n 
OE2 HOE2 CB3 sing 174 n n 
CT O1 CB3 doub 175 n n 
CT O2 CB3 sing 176 n n 
O2 HO2 CB3 sing 177 n n 
CP1 CP2 CB3 sing 178 n n 
CP1 HP11 CB3 sing 179 n n 
CP1 HP12 CB3 sing 180 n n 
CP2 CP3 CB3 trip 181 n n 
CP3 HP3 CB3 sing 182 n n 
#
_atom_sites.entry_id                     6N1T 
_atom_sites.fract_transf_matrix[1][1]    0.018794 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006928 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005741 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UMP A 1 701 701 UMP UMP . 
D 3 NDP A 1 702 702 NDP NDP . 
E 4 CB3 A 1 703 703 CB3 CB3 . 
F 5 BOD A 1 704 1 BOD VY1 . 
G 2 UMP B 1 701 701 UMP UMP . 
H 3 NDP B 1 702 702 NDP NDP . 
I 4 CB3 B 1 703 703 CB3 CB3 . 
J 5 BOD B 1 704 2 BOD VY1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 CB3 . . . I 4 42.037 53.86 -41.08 0.5 23.81 ? N1 CB3 703 B 1 
HETATM 2 C C2 CB3 . . . I 4 41.825 53.933 -42.406 0.5 23.93 ? C2 CB3 703 B 1 
HETATM 3 N NA2 CB3 . . . I 4 42.741 54.559 -43.178 0.5 24.06 ? NA2 CB3 703 B 1 
HETATM 4 N N3 CB3 . . . I 4 40.724 53.414 -43.006 0.5 23.93 ? N3 CB3 703 B 1 
HETATM 5 C C4 CB3 . . . I 4 39.762 52.779 -42.306 0.5 23.78 ? C4 CB3 703 B 1 
HETATM 6 O O4 CB3 . . . I 4 38.752 52.304 -42.871 0.5 23.84 ? O4 CB3 703 B 1 
HETATM 7 C C4A CB3 . . . I 4 39.944 52.666 -40.842 0.5 23.68 ? C4A CB3 703 B 1 
HETATM 8 C C5 CB3 . . . I 4 39.026 52.037 -40.018 0.5 23.42 ? C5 CB3 703 B 1 
HETATM 9 C C6 CB3 . . . I 4 39.275 51.976 -38.652 0.5 23.14 ? C6 CB3 703 B 1 
HETATM 10 C C7 CB3 . . . I 4 40.426 52.533 -38.098 0.5 23.16 ? C7 CB3 703 B 1 
HETATM 11 C C8 CB3 . . . I 4 41.373 53.174 -38.893 0.5 23.41 ? C8 CB3 703 B 1 
HETATM 12 C C8A CB3 . . . I 4 41.166 53.257 -40.263 0.5 23.61 ? C8A CB3 703 B 1 
HETATM 13 C C9 CB3 . . . I 4 38.269 51.285 -37.769 0.5 22.88 ? C9 CB3 703 B 1 
HETATM 14 N N10 CB3 . . . I 4 37.248 50.708 -38.629 0.5 22.61 ? N10 CB3 703 B 1 
HETATM 15 C C11 CB3 . . . I 4 38.316 48.061 -41.709 0.5 22.04 ? C11 CB3 703 B 1 
HETATM 16 C C12 CB3 . . . I 4 36.991 48.455 -41.552 0.5 22.04 ? C12 CB3 703 B 1 
HETATM 17 C C13 CB3 . . . I 4 36.636 49.332 -40.531 0.5 22.18 ? C13 CB3 703 B 1 
HETATM 18 C C14 CB3 . . . I 4 37.604 49.822 -39.66 0.5 22.37 ? C14 CB3 703 B 1 
HETATM 19 C C15 CB3 . . . I 4 38.929 49.431 -39.819 0.5 22.36 ? C15 CB3 703 B 1 
HETATM 20 C C16 CB3 . . . I 4 39.282 48.553 -40.838 0.5 22.15 ? C16 CB3 703 B 1 
HETATM 21 C C CB3 . . . I 4 38.698 47.112 -42.811 0.5 21.91 ? C CB3 703 B 1 
HETATM 22 O O CB3 . . . I 4 39.814 46.618 -42.831 0.5 21.7 ? O CB3 703 B 1 
HETATM 23 N N CB3 . . . I 4 37.796 46.829 -43.743 0.5 21.97 ? N CB3 703 B 1 
HETATM 24 C CA CB3 . . . I 4 36.908 45.696 -43.602 0.5 21.97 ? CA CB3 703 B 1 
HETATM 25 C CB CB3 . . . I 4 35.757 45.793 -44.597 0.5 22.09 ? CB CB3 703 B 1 
HETATM 26 C CG CB3 . . . I 4 34.535 46.416 -43.932 0.5 22.22 ? CG CB3 703 B 1 
HETATM 27 C CD CB3 . . . I 4 33.693 47.141 -44.956 0.5 22.27 ? CD CB3 703 B 1 
HETATM 28 O OE1 CB3 . . . I 4 33.653 48.391 -44.924 0.5 22.21 ? OE1 CB3 703 B 1 
HETATM 29 O OE2 CB3 . . . I 4 33.063 46.462 -45.793 0.5 22.4 ? OE2 CB3 703 B 1 
HETATM 30 C CT CB3 . . . I 4 37.655 44.417 -43.808 0.5 21.92 ? CT CB3 703 B 1 
HETATM 31 O O1 CB3 . . . I 4 38.609 44.161 -43.043 0.5 21.93 ? O1 CB3 703 B 1 
HETATM 32 O O2 CB3 . . . I 4 37.295 43.663 -44.736 0.5 21.98 ? O2 CB3 703 B 1 
HETATM 33 C CP1 CB3 . . . I 4 35.86 51.081 -38.413 0.5 22.76 ? CP1 CB3 703 B 1 
HETATM 34 C CP2 CB3 . . . I 4 35.434 51.856 -39.585 0.5 22.89 ? CP2 CB3 703 B 1 
HETATM 35 C CP3 CB3 . . . I 4 34.957 52.494 -40.596 0.5 23.13 ? CP3 CB3 703 B 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           339 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           35 
#