data_6N1T # _model_server_result.job_id j4gmsPDx5NrwVOuK34iJfg _model_server_result.datetime_utc '2024-11-24 02:41:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n1t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":704}' # _entry.id 6N1T # _exptl.entry_id 6N1T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 378.431 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-{4-[3-(2-methoxypyrimidin-5-yl)phenyl]piperazin-1-yl}pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6N1T _cell.length_a 53.209 _cell.length_b 144.343 _cell.length_c 174.189 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N1T _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 J N N # _chem_comp.formula 'C19 H22 N8 O' _chem_comp.formula_weight 378.431 _chem_comp.id BOD _chem_comp.mon_nstd_flag . _chem_comp.name 5-{4-[3-(2-methoxypyrimidin-5-yl)phenyl]piperazin-1-yl}pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 BOD doub 70 n y C7 C6 BOD sing 71 n y C8 C9 BOD sing 72 n y C14 C13 BOD sing 73 n n C14 N2 BOD sing 74 n n C6 C5 BOD doub 75 n y C13 N3 BOD sing 76 n n C9 N2 BOD sing 77 n n C9 C10 BOD doub 78 n y N2 C11 BOD sing 79 n n C5 C10 BOD sing 80 n y C5 C3 BOD sing 81 n n N6 C18 BOD sing 82 n n C2 C3 BOD doub 83 n y C2 N BOD sing 84 n y N3 C15 BOD sing 85 n n N3 C12 BOD sing 86 n n C11 C12 BOD sing 87 n n C3 C4 BOD sing 88 n y C18 C15 BOD doub 89 n y C18 N5 BOD sing 90 n y C15 C16 BOD sing 91 n y N C1 BOD doub 92 n y N5 C17 BOD doub 93 n y C4 N1 BOD doub 94 n y C16 N4 BOD doub 95 n y C1 N1 BOD sing 96 n y C1 O BOD sing 97 n n C17 N4 BOD sing 98 n y C17 N7 BOD sing 99 n n O C BOD sing 100 n n C16 H1 BOD sing 101 n n C12 H2 BOD sing 102 n n C12 H3 BOD sing 103 n n C11 H4 BOD sing 104 n n C11 H5 BOD sing 105 n n C13 H6 BOD sing 106 n n C13 H7 BOD sing 107 n n C8 H8 BOD sing 108 n n C6 H9 BOD sing 109 n n N7 H10 BOD sing 110 n n N7 H11 BOD sing 111 n n C4 H12 BOD sing 112 n n C2 H13 BOD sing 113 n n N6 H14 BOD sing 114 n n N6 H15 BOD sing 115 n n C14 H16 BOD sing 116 n n C14 H17 BOD sing 117 n n C7 H18 BOD sing 118 n n C10 H19 BOD sing 119 n n C H20 BOD sing 120 n n C H21 BOD sing 121 n n C H22 BOD sing 122 n n # _atom_sites.entry_id 6N1T _atom_sites.fract_transf_matrix[1][1] 0.018794 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006928 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UMP A 1 701 701 UMP UMP . D 3 NDP A 1 702 702 NDP NDP . E 4 CB3 A 1 703 703 CB3 CB3 . F 5 BOD A 1 704 1 BOD VY1 . G 2 UMP B 1 701 701 UMP UMP . H 3 NDP B 1 702 702 NDP NDP . I 4 CB3 B 1 703 703 CB3 CB3 . J 5 BOD B 1 704 2 BOD VY1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 BOD . . . J 5 4.464 39.91 -63.014 1 38.46 ? C18 BOD 704 B 1 HETATM 2 C C17 BOD . . . J 5 5.757 41.559 -61.961 1 37.88 ? C17 BOD 704 B 1 HETATM 3 C C16 BOD . . . J 5 3.974 40.609 -60.78 1 38.6 ? C16 BOD 704 B 1 HETATM 4 C C12 BOD . . . J 5 2.376 38.153 -60.506 1 40.12 ? C12 BOD 704 B 1 HETATM 5 C C11 BOD . . . J 5 1.324 37.06 -60.719 1 40.66 ? C11 BOD 704 B 1 HETATM 6 C C9 BOD . . . J 5 -1.034 37.901 -60.449 1 41.2 ? C9 BOD 704 B 1 HETATM 7 N N5 BOD . . . J 5 5.489 40.79 -63.036 1 37.75 ? N5 BOD 704 B 1 HETATM 8 C C13 BOD . . . J 5 1.656 38.736 -62.907 1 39.73 ? C13 BOD 704 B 1 HETATM 9 C C8 BOD . . . J 5 -2.212 38.285 -61.09 1 41.37 ? C8 BOD 704 B 1 HETATM 10 C C6 BOD . . . J 5 -3.395 38.231 -58.987 1 42.56 ? C6 BOD 704 B 1 HETATM 11 N N7 BOD . . . J 5 6.788 42.434 -62.002 1 38.57 ? N7 BOD 704 B 1 HETATM 12 C C4 BOD . . . J 5 -1.099 37.248 -56.226 1 44.33 ? C4 BOD 704 B 1 HETATM 13 N N1 BOD . . . J 5 -1.117 37.042 -54.896 1 44.47 ? N1 BOD 704 B 1 HETATM 14 C C2 BOD . . . J 5 -3.433 37.782 -56.156 1 43.93 ? C2 BOD 704 B 1 HETATM 15 C C3 BOD . . . J 5 -2.259 37.629 -56.915 1 43.99 ? C3 BOD 704 B 1 HETATM 16 N N4 BOD . . . J 5 5.002 41.465 -60.845 1 38.06 ? N4 BOD 704 B 1 HETATM 17 N N6 BOD . . . J 5 4.256 39.176 -64.135 1 38.65 ? N6 BOD 704 B 1 HETATM 18 C C15 BOD . . . J 5 3.661 39.793 -61.868 1 38.9 ? C15 BOD 704 B 1 HETATM 19 N N3 BOD . . . J 5 2.564 38.898 -61.761 1 39.56 ? N3 BOD 704 B 1 HETATM 20 C C14 BOD . . . J 5 0.206 38.428 -62.517 1 40.15 ? C14 BOD 704 B 1 HETATM 21 N N2 BOD . . . J 5 0.149 37.774 -61.211 1 40.77 ? N2 BOD 704 B 1 HETATM 22 C C7 BOD . . . J 5 -3.389 38.445 -60.365 1 42.01 ? C7 BOD 704 B 1 HETATM 23 C C10 BOD . . . J 5 -1.058 37.684 -59.063 1 42.25 ? C10 BOD 704 B 1 HETATM 24 C C5 BOD . . . J 5 -2.236 37.843 -58.309 1 43.06 ? C5 BOD 704 B 1 HETATM 25 N N BOD . . . J 5 -3.416 37.566 -54.823 1 44.15 ? N BOD 704 B 1 HETATM 26 C C1 BOD . . . J 5 -2.267 37.198 -54.182 1 44.39 ? C1 BOD 704 B 1 HETATM 27 O O BOD . . . J 5 -2.273 36.983 -52.817 1 44.15 ? O BOD 704 B 1 HETATM 28 C C BOD . . . J 5 -1.066 36.854 -52.054 1 43.62 ? C BOD 704 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #