data_6N1X # _model_server_result.job_id OmXx4VFpPjGOgYUc94OHHA _model_server_result.datetime_utc '2024-11-15 15:58:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n1x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6N1X # _exptl.entry_id 6N1X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6N1X _cell.length_a 135.143 _cell.length_b 135.143 _cell.length_c 135.143 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N1X _symmetry.cell_setting ? _symmetry.Int_Tables_number 195 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 135.143 0 0 3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 135.143 0 135.143 4 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 135.143 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NDG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms N-acetyl-alpha-D-glucosamine;2-acetamido-2-deoxy-alpha-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NDG sing 237 n n C1 O5 NDG sing 238 n n C1 O1 NDG sing 239 n n C1 H1 NDG sing 240 n n C2 C3 NDG sing 241 n n C2 N2 NDG sing 242 n n C2 H2 NDG sing 243 n n C3 C4 NDG sing 244 n n C3 O3 NDG sing 245 n n C3 H3 NDG sing 246 n n C4 C5 NDG sing 247 n n C4 O4 NDG sing 248 n n C4 H4 NDG sing 249 n n C5 C6 NDG sing 250 n n C5 O5 NDG sing 251 n n C5 H5 NDG sing 252 n n C6 O6 NDG sing 253 n n C6 H61 NDG sing 254 n n C6 H62 NDG sing 255 n n C7 C8 NDG sing 256 n n C7 O7 NDG doub 257 n n C7 N2 NDG sing 258 n n C8 H81 NDG sing 259 n n C8 H82 NDG sing 260 n n C8 H83 NDG sing 261 n n O3 HO3 NDG sing 262 n n O4 HO4 NDG sing 263 n n O6 HO6 NDG sing 264 n n N2 HN2 NDG sing 265 n n O1 HO1 NDG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NDG DGlcpNAca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NDG N-acetyl-a-D-glucopyranosamine 'COMMON NAME' GMML 1 NDG a-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NDG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6N1X _atom_sites.fract_transf_matrix[1][1] 0.0074 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0074 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UDP A 1 401 1 UDP UDP . C 3 NDG A 1 402 1 NDG NDG . D 4 HOH A 1 501 38 HOH HOH . D 4 HOH A 2 502 26 HOH HOH . D 4 HOH A 3 503 14 HOH HOH . D 4 HOH A 4 504 28 HOH HOH . D 4 HOH A 5 505 39 HOH HOH . D 4 HOH A 6 506 47 HOH HOH . D 4 HOH A 7 507 8 HOH HOH . D 4 HOH A 8 508 6 HOH HOH . D 4 HOH A 9 509 33 HOH HOH . D 4 HOH A 10 510 54 HOH HOH . D 4 HOH A 11 511 42 HOH HOH . D 4 HOH A 12 512 1 HOH HOH . D 4 HOH A 13 513 23 HOH HOH . D 4 HOH A 14 514 59 HOH HOH . D 4 HOH A 15 515 21 HOH HOH . D 4 HOH A 16 516 9 HOH HOH . D 4 HOH A 17 517 52 HOH HOH . D 4 HOH A 18 518 17 HOH HOH . D 4 HOH A 19 519 4 HOH HOH . D 4 HOH A 20 520 62 HOH HOH . D 4 HOH A 21 521 3 HOH HOH . D 4 HOH A 22 522 53 HOH HOH . D 4 HOH A 23 523 15 HOH HOH . D 4 HOH A 24 524 12 HOH HOH . D 4 HOH A 25 525 31 HOH HOH . D 4 HOH A 26 526 2 HOH HOH . D 4 HOH A 27 527 16 HOH HOH . D 4 HOH A 28 528 71 HOH HOH . D 4 HOH A 29 529 5 HOH HOH . D 4 HOH A 30 530 70 HOH HOH . D 4 HOH A 31 531 40 HOH HOH . D 4 HOH A 32 532 10 HOH HOH . D 4 HOH A 33 533 44 HOH HOH . D 4 HOH A 34 534 20 HOH HOH . D 4 HOH A 35 535 7 HOH HOH . D 4 HOH A 36 536 48 HOH HOH . D 4 HOH A 37 537 41 HOH HOH . D 4 HOH A 38 538 58 HOH HOH . D 4 HOH A 39 539 29 HOH HOH . D 4 HOH A 40 540 37 HOH HOH . D 4 HOH A 41 541 72 HOH HOH . D 4 HOH A 42 542 30 HOH HOH . D 4 HOH A 43 543 25 HOH HOH . D 4 HOH A 44 544 27 HOH HOH . D 4 HOH A 45 545 22 HOH HOH . D 4 HOH A 46 546 34 HOH HOH . D 4 HOH A 47 547 63 HOH HOH . D 4 HOH A 48 548 43 HOH HOH . D 4 HOH A 49 549 35 HOH HOH . D 4 HOH A 50 550 50 HOH HOH . D 4 HOH A 51 551 66 HOH HOH . D 4 HOH A 52 552 18 HOH HOH . D 4 HOH A 53 553 68 HOH HOH . D 4 HOH A 54 554 51 HOH HOH . D 4 HOH A 55 555 11 HOH HOH . D 4 HOH A 56 556 64 HOH HOH . D 4 HOH A 57 557 67 HOH HOH . D 4 HOH A 58 558 32 HOH HOH . D 4 HOH A 59 559 73 HOH HOH . D 4 HOH A 60 560 36 HOH HOH . D 4 HOH A 61 561 61 HOH HOH . D 4 HOH A 62 562 46 HOH HOH . D 4 HOH A 63 563 69 HOH HOH . D 4 HOH A 64 564 19 HOH HOH . D 4 HOH A 65 565 24 HOH HOH . D 4 HOH A 66 566 13 HOH HOH . D 4 HOH A 67 567 55 HOH HOH . D 4 HOH A 68 568 60 HOH HOH . D 4 HOH A 69 569 49 HOH HOH . D 4 HOH A 70 570 57 HOH HOH . D 4 HOH A 71 571 45 HOH HOH . D 4 HOH A 72 572 56 HOH HOH . D 4 HOH A 73 573 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NDG . . . C 3 52.059 -14.5 60.003 1 32.66 ? C1 NDG 402 A 1 HETATM 2 C C2 NDG . . . C 3 50.591 -14.764 60.346 1 36.5 ? C2 NDG 402 A 1 HETATM 3 C C3 NDG . . . C 3 50.221 -16.217 60.569 1 34.58 ? C3 NDG 402 A 1 HETATM 4 C C4 NDG . . . C 3 50.872 -17.101 59.532 1 32.28 ? C4 NDG 402 A 1 HETATM 5 C C5 NDG . . . C 3 52.367 -16.816 59.486 1 31.57 ? C5 NDG 402 A 1 HETATM 6 C C6 NDG . . . C 3 53.083 -17.716 58.495 1 27.89 ? C6 NDG 402 A 1 HETATM 7 C C7 NDG . . . C 3 49.134 -13.255 61.484 1 40.16 ? C7 NDG 402 A 1 HETATM 8 C C8 NDG . . . C 3 48.612 -12.833 62.816 1 39.35 ? C8 NDG 402 A 1 HETATM 9 O O5 NDG . . . C 3 52.594 -15.467 59.117 1 32.03 ? O5 NDG 402 A 1 HETATM 10 O O3 NDG . . . C 3 48.812 -16.339 60.462 1 34.3 ? O3 NDG 402 A 1 HETATM 11 O O4 NDG . . . C 3 50.627 -18.451 59.895 1 30.2 ? O4 NDG 402 A 1 HETATM 12 O O6 NDG . . . C 3 52.594 -17.497 57.181 1 28.35 ? O6 NDG 402 A 1 HETATM 13 O O7 NDG . . . C 3 48.609 -12.936 60.452 1 37.54 ? O7 NDG 402 A 1 HETATM 14 N N2 NDG . . . C 3 50.212 -14.008 61.505 1 36.59 ? N2 NDG 402 A 1 HETATM 15 O O1 NDG . . . C 3 52.859 -14.431 61.178 1 39.31 ? O1 NDG 402 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #