data_6N2J
#
_model_server_result.job_id            oUSwWCL9KwE64477q8MjIA 
_model_server_result.datetime_utc      '2024-12-03 06:30:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6n2j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    6N2J 
#
_exptl.entry_id    6N2J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              401.504 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-{4-[7-(naphthalen-1-yl)-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4-yl]piperazin-1-yl}propan-1-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6N2J 
_cell.length_a            40.25 
_cell.length_b            51.13 
_cell.length_c            90.12 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6N2J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 13 A CYS 12 1_555 D C30 K9M . A K9M 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.718 ? 
metalc ? metalc1 A OG SER 18 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc2 B O2B GDP . A GDP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc3 C MG MG . A MG 202 1_555 E O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc4 C MG MG . A MG 202 1_555 E O HOH . A HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc5 C MG MG . A MG 202 1_555 E O HOH . A HOH 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc6 C MG MG . A MG 202 1_555 E O HOH . A HOH 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
#
_chem_comp.formula           'C24 H27 N5 O' 
_chem_comp.formula_weight    401.504 
_chem_comp.id                K9M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-{4-[7-(naphthalen-1-yl)-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4-yl]piperazin-1-yl}propan-1-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C19 C18 K9M doub 218 n y 
C19 C20 K9M sing 219 n y 
C18 C17 K9M sing 220 n y 
C20 C21 K9M doub 221 n y 
C8 N9 K9M sing 222 n n 
C8 C7 K9M sing 223 n n 
C17 N9 K9M sing 224 n n 
C17 C22 K9M doub 225 n y 
C21 C22 K9M sing 226 n y 
C21 C23 K9M sing 227 n y 
N9 C10 K9M sing 228 n n 
C10 C2 K9M sing 229 n n 
C7 C1 K9M sing 230 n n 
C22 C26 K9M sing 231 n y 
C2 C1 K9M doub 232 n y 
C2 N3 K9M sing 233 n y 
C1 C6 K9M sing 234 n y 
C23 C24 K9M doub 235 n y 
C13 C12 K9M sing 236 n n 
C13 N14 K9M sing 237 n n 
N3 C4 K9M doub 238 n y 
C12 N11 K9M sing 239 n n 
C6 N11 K9M sing 240 n n 
C6 N5 K9M doub 241 n y 
N11 C16 K9M sing 242 n n 
C4 N5 K9M sing 243 n y 
C26 C25 K9M doub 244 n y 
C16 C15 K9M sing 245 n n 
C24 C25 K9M sing 246 n y 
N14 C27 K9M sing 247 n n 
N14 C15 K9M sing 248 n n 
C28 C27 K9M sing 249 n n 
C28 C30 K9M sing 250 n n 
C27 O29 K9M doub 251 n n 
C18 H1 K9M sing 252 n n 
C13 H2 K9M sing 253 n n 
C13 H3 K9M sing 254 n n 
C12 H4 K9M sing 255 n n 
C12 H5 K9M sing 256 n n 
C16 H6 K9M sing 257 n n 
C16 H7 K9M sing 258 n n 
C15 H8 K9M sing 259 n n 
C15 H9 K9M sing 260 n n 
C10 H10 K9M sing 261 n n 
C10 H11 K9M sing 262 n n 
C8 H12 K9M sing 263 n n 
C8 H13 K9M sing 264 n n 
C7 H14 K9M sing 265 n n 
C7 H15 K9M sing 266 n n 
C4 H16 K9M sing 267 n n 
C19 H17 K9M sing 268 n n 
C20 H18 K9M sing 269 n n 
C23 H19 K9M sing 270 n n 
C24 H20 K9M sing 271 n n 
C25 H21 K9M sing 272 n n 
C26 H22 K9M sing 273 n n 
C28 H23 K9M sing 274 n n 
C28 H24 K9M sing 275 n n 
C30 H25 K9M sing 276 n n 
C30 H26 K9M sing 277 n n 
C30 H27 K9M sing 278 n n 
#
_atom_sites.entry_id                     6N2J 
_atom_sites.fract_transf_matrix[1][1]    0.024845 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019558 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011096 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GDP A 1 201 201 GDP GDP . 
C 3 MG A 1 202 202 MG MG . 
D 4 K9M A 1 203 1 K9M SM1 . 
E 5 HOH A 1 301 42 HOH HOH . 
E 5 HOH A 2 302 120 HOH HOH . 
E 5 HOH A 3 303 116 HOH HOH . 
E 5 HOH A 4 304 104 HOH HOH . 
E 5 HOH A 5 305 13 HOH HOH . 
E 5 HOH A 6 306 109 HOH HOH . 
E 5 HOH A 7 307 110 HOH HOH . 
E 5 HOH A 8 308 22 HOH HOH . 
E 5 HOH A 9 309 33 HOH HOH . 
E 5 HOH A 10 310 59 HOH HOH . 
E 5 HOH A 11 311 57 HOH HOH . 
E 5 HOH A 12 312 1 HOH HOH . 
E 5 HOH A 13 313 85 HOH HOH . 
E 5 HOH A 14 314 47 HOH HOH . 
E 5 HOH A 15 315 69 HOH HOH . 
E 5 HOH A 16 316 80 HOH HOH . 
E 5 HOH A 17 317 31 HOH HOH . 
E 5 HOH A 18 318 78 HOH HOH . 
E 5 HOH A 19 319 52 HOH HOH . 
E 5 HOH A 20 320 16 HOH HOH . 
E 5 HOH A 21 321 37 HOH HOH . 
E 5 HOH A 22 322 45 HOH HOH . 
E 5 HOH A 23 323 82 HOH HOH . 
E 5 HOH A 24 324 24 HOH HOH . 
E 5 HOH A 25 325 65 HOH HOH . 
E 5 HOH A 26 326 84 HOH HOH . 
E 5 HOH A 27 327 6 HOH HOH . 
E 5 HOH A 28 328 114 HOH HOH . 
E 5 HOH A 29 329 86 HOH HOH . 
E 5 HOH A 30 330 100 HOH HOH . 
E 5 HOH A 31 331 34 HOH HOH . 
E 5 HOH A 32 332 105 HOH HOH . 
E 5 HOH A 33 333 112 HOH HOH . 
E 5 HOH A 34 334 121 HOH HOH . 
E 5 HOH A 35 335 8 HOH HOH . 
E 5 HOH A 36 336 102 HOH HOH . 
E 5 HOH A 37 337 17 HOH HOH . 
E 5 HOH A 38 338 94 HOH HOH . 
E 5 HOH A 39 339 76 HOH HOH . 
E 5 HOH A 40 340 81 HOH HOH . 
E 5 HOH A 41 341 60 HOH HOH . 
E 5 HOH A 42 342 106 HOH HOH . 
E 5 HOH A 43 343 66 HOH HOH . 
E 5 HOH A 44 344 95 HOH HOH . 
E 5 HOH A 45 345 20 HOH HOH . 
E 5 HOH A 46 346 30 HOH HOH . 
E 5 HOH A 47 347 99 HOH HOH . 
E 5 HOH A 48 348 25 HOH HOH . 
E 5 HOH A 49 349 115 HOH HOH . 
E 5 HOH A 50 350 55 HOH HOH . 
E 5 HOH A 51 351 83 HOH HOH . 
E 5 HOH A 52 352 41 HOH HOH . 
E 5 HOH A 53 353 61 HOH HOH . 
E 5 HOH A 54 354 74 HOH HOH . 
E 5 HOH A 55 355 122 HOH HOH . 
E 5 HOH A 56 356 18 HOH HOH . 
E 5 HOH A 57 357 46 HOH HOH . 
E 5 HOH A 58 358 19 HOH HOH . 
E 5 HOH A 59 359 93 HOH HOH . 
E 5 HOH A 60 360 39 HOH HOH . 
E 5 HOH A 61 361 4 HOH HOH . 
E 5 HOH A 62 362 15 HOH HOH . 
E 5 HOH A 63 363 63 HOH HOH . 
E 5 HOH A 64 364 70 HOH HOH . 
E 5 HOH A 65 365 92 HOH HOH . 
E 5 HOH A 66 366 90 HOH HOH . 
E 5 HOH A 67 367 108 HOH HOH . 
E 5 HOH A 68 368 36 HOH HOH . 
E 5 HOH A 69 369 48 HOH HOH . 
E 5 HOH A 70 370 111 HOH HOH . 
E 5 HOH A 71 371 5 HOH HOH . 
E 5 HOH A 72 372 28 HOH HOH . 
E 5 HOH A 73 373 53 HOH HOH . 
E 5 HOH A 74 374 67 HOH HOH . 
E 5 HOH A 75 375 11 HOH HOH . 
E 5 HOH A 76 376 79 HOH HOH . 
E 5 HOH A 77 377 14 HOH HOH . 
E 5 HOH A 78 378 12 HOH HOH . 
E 5 HOH A 79 379 9 HOH HOH . 
E 5 HOH A 80 380 7 HOH HOH . 
E 5 HOH A 81 381 56 HOH HOH . 
E 5 HOH A 82 382 21 HOH HOH . 
E 5 HOH A 83 383 2 HOH HOH . 
E 5 HOH A 84 384 29 HOH HOH . 
E 5 HOH A 85 385 113 HOH HOH . 
E 5 HOH A 86 386 88 HOH HOH . 
E 5 HOH A 87 387 101 HOH HOH . 
E 5 HOH A 88 388 75 HOH HOH . 
E 5 HOH A 89 389 50 HOH HOH . 
E 5 HOH A 90 390 23 HOH HOH . 
E 5 HOH A 91 391 3 HOH HOH . 
E 5 HOH A 92 392 43 HOH HOH . 
E 5 HOH A 93 393 26 HOH HOH . 
E 5 HOH A 94 394 103 HOH HOH . 
E 5 HOH A 95 395 27 HOH HOH . 
E 5 HOH A 96 396 40 HOH HOH . 
E 5 HOH A 97 397 44 HOH HOH . 
E 5 HOH A 98 398 72 HOH HOH . 
E 5 HOH A 99 399 117 HOH HOH . 
E 5 HOH A 100 400 35 HOH HOH . 
E 5 HOH A 101 401 73 HOH HOH . 
E 5 HOH A 102 402 68 HOH HOH . 
E 5 HOH A 103 403 58 HOH HOH . 
E 5 HOH A 104 404 87 HOH HOH . 
E 5 HOH A 105 405 119 HOH HOH . 
E 5 HOH A 106 406 38 HOH HOH . 
E 5 HOH A 107 407 10 HOH HOH . 
E 5 HOH A 108 408 107 HOH HOH . 
E 5 HOH A 109 409 89 HOH HOH . 
E 5 HOH A 110 410 54 HOH HOH . 
E 5 HOH A 111 411 71 HOH HOH . 
E 5 HOH A 112 412 62 HOH HOH . 
E 5 HOH A 113 413 118 HOH HOH . 
E 5 HOH A 114 414 91 HOH HOH . 
E 5 HOH A 115 415 96 HOH HOH . 
E 5 HOH A 116 416 97 HOH HOH . 
E 5 HOH A 117 417 77 HOH HOH . 
E 5 HOH A 118 418 49 HOH HOH . 
E 5 HOH A 119 419 51 HOH HOH . 
E 5 HOH A 120 420 98 HOH HOH . 
E 5 HOH A 121 421 32 HOH HOH . 
E 5 HOH A 122 422 64 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 K9M . . . D 4 18.872 3.873 -25.51 1 27.54 ? C18 K9M 203 A 1 
HETATM 2 N N5 K9M . . . D 4 25.1 4.723 -22.117 1 25.75 ? N5 K9M 203 A 1 
HETATM 3 C C13 K9M . . . D 4 27.118 0.935 -22.679 1 25.93 ? C13 K9M 203 A 1 
HETATM 4 C C12 K9M . . . D 4 26.683 2.393 -22.521 1 27.14 ? C12 K9M 203 A 1 
HETATM 5 C C17 K9M . . . D 4 19.108 3.824 -24.121 1 24.58 ? C17 K9M 203 A 1 
HETATM 6 C C16 K9M . . . D 4 24.558 1.244 -21.688 1 31.74 ? C16 K9M 203 A 1 
HETATM 7 C C15 K9M . . . D 4 25.449 0.478 -20.759 1 26.19 ? C15 K9M 203 A 1 
HETATM 8 N N3 K9M . . . D 4 23.086 5.914 -22.602 1 24.75 ? N3 K9M 203 A 1 
HETATM 9 C C10 K9M . . . D 4 21.032 4.992 -23.457 1 23.01 ? C10 K9M 203 A 1 
HETATM 10 C C8 K9M . . . D 4 21.301 2.718 -24.303 1 28.26 ? C8 K9M 203 A 1 
HETATM 11 C C22 K9M . . . D 4 18.007 3.925 -23.234 1 25.78 ? C22 K9M 203 A 1 
HETATM 12 C C7 K9M . . . D 4 22.423 2.263 -23.354 1 29.48 ? C7 K9M 203 A 1 
HETATM 13 C C6 K9M . . . D 4 24.499 3.557 -22.46 1 26.54 ? C6 K9M 203 A 1 
HETATM 14 C C1 K9M . . . D 4 23.135 3.543 -22.903 1 23.32 ? C1 K9M 203 A 1 
HETATM 15 C C4 K9M . . . D 4 24.366 5.844 -22.218 1 25.74 ? C4 K9M 203 A 1 
HETATM 16 C C19 K9M . . . D 4 17.561 3.987 -26.049 1 24.19 ? C19 K9M 203 A 1 
HETATM 17 C C20 K9M . . . D 4 16.472 4.097 -25.18 1 26.64 ? C20 K9M 203 A 1 
HETATM 18 C C21 K9M . . . D 4 16.684 4.048 -23.781 1 27.61 ? C21 K9M 203 A 1 
HETATM 19 C C2 K9M . . . D 4 22.463 4.8 -23 1 23.02 ? C2 K9M 203 A 1 
HETATM 20 N N9 K9M . . . D 4 20.412 3.718 -23.624 1 25.17 ? N9 K9M 203 A 1 
HETATM 21 N N11 K9M . . . D 4 25.24 2.394 -22.328 1 24.18 ? N11 K9M 203 A 1 
HETATM 22 N N14 K9M . . . D 4 26.747 0.167 -21.448 1 23.88 ? N14 K9M 203 A 1 
HETATM 23 C C23 K9M . . . D 4 15.582 4.131 -22.897 1 24.7 ? C23 K9M 203 A 1 
HETATM 24 C C24 K9M . . . D 4 15.812 4.105 -21.491 1 23.8 ? C24 K9M 203 A 1 
HETATM 25 C C25 K9M . . . D 4 17.115 4.006 -20.923 1 24.36 ? C25 K9M 203 A 1 
HETATM 26 C C26 K9M . . . D 4 18.216 3.897 -21.819 1 25.61 ? C26 K9M 203 A 1 
HETATM 27 C C27 K9M . . . D 4 27.534 -0.754 -20.804 1 24.12 ? C27 K9M 203 A 1 
HETATM 28 C C28 K9M . . . D 4 28.958 -1.089 -21.364 1 22.56 ? C28 K9M 203 A 1 
HETATM 29 O O29 K9M . . . D 4 27.049 -1.285 -19.777 1 25.27 ? O29 K9M 203 A 1 
HETATM 30 C C30 K9M . . . D 4 30.092 -0.589 -20.404 1 28.09 ? C30 K9M 203 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           30 
#