data_6N2O
#
_model_server_result.job_id            oLKKZh0FzqxhUUGcsdLmTA 
_model_server_result.datetime_utc      '2025-01-10 12:57:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6n2o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":402}' 
#
_entry.id    6N2O 
#
_exptl.entry_id    6N2O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              425.314 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'THIAMINE DIPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6N2O 
_cell.length_a            86.407 
_cell.length_b            100.532 
_cell.length_c            202.053 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6N2O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 H N N 
? 6 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 J CS1 SCA . C SCA 601 1_555 L C2 TPP . D TPP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.595 ? 
metalc ? metalc1 B SG CYS 26 B CYS 26 1_555 G FE4 SF4 . B SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc2 B SG CYS 29 B CYS 29 1_555 G FE2 SF4 . B SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc3 B SG CYS 60 B CYS 60 1_555 G FE3 SF4 . B SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc4 B OD1 ASP 102 B ASP 102 1_555 I MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc5 B OD1 ASN 130 B ASN 130 1_555 I MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc6 B O ILE 132 B ILE 132 1_555 I MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc7 B SG CYS 209 B CYS 209 1_555 G FE1 SF4 . B SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc8 H O2A TPP . B TPP 402 1_555 I MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? 
metalc ? metalc9 H O1B TPP . B TPP 402 1_555 I MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc10 I MG MG . B MG 403 1_555 O O HOH . B HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc11 D SG CYS 26 D CYS 26 1_555 K FE4 SF4 . D SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc12 D SG CYS 29 D CYS 29 1_555 K FE2 SF4 . D SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc13 D SG CYS 60 D CYS 60 1_555 K FE3 SF4 . D SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc14 D OD1 ASP 102 D ASP 102 1_555 M MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc15 D OD1 ASN 130 D ASN 130 1_555 M MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc16 D O ILE 132 D ILE 132 1_555 M MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc17 D SG CYS 209 D CYS 209 1_555 K FE1 SF4 . D SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc18 L O1A TPP . D TPP 402 1_555 M MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
metalc ? metalc19 L O1B TPP . D TPP 402 1_555 M MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc20 M MG MG . D MG 403 1_555 Q O HOH . D HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
#
_chem_comp.formula           'C12 H19 N4 O7 P2 S 1' 
_chem_comp.formula_weight    425.314 
_chem_comp.id                TPP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'THIAMINE DIPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1' C2' TPP doub 516 n y 
N1' C6' TPP sing 517 n y 
C2' CM2 TPP sing 518 n n 
C2' N3' TPP sing 519 n y 
CM2 HM21 TPP sing 520 n n 
CM2 HM22 TPP sing 521 n n 
CM2 HM23 TPP sing 522 n n 
N3' C4' TPP doub 523 n y 
C4' N4' TPP sing 524 n n 
C4' C5' TPP sing 525 n y 
N4' HN41 TPP sing 526 n n 
N4' HN42 TPP sing 527 n n 
C5' C6' TPP doub 528 n y 
C5' C7' TPP sing 529 n n 
C6' H6' TPP sing 530 n n 
C7' N3 TPP sing 531 n n 
C7' "H7'1" TPP sing 532 n n 
C7' "H7'2" TPP sing 533 n n 
N3 C2 TPP doub 534 n y 
N3 C4 TPP sing 535 n y 
C2 S1 TPP sing 536 n y 
C2 H2 TPP sing 537 n n 
S1 C5 TPP sing 538 n y 
C5 C4 TPP doub 539 n y 
C5 C6 TPP sing 540 n n 
C4 CM4 TPP sing 541 n n 
CM4 HM41 TPP sing 542 n n 
CM4 HM42 TPP sing 543 n n 
CM4 HM43 TPP sing 544 n n 
C6 C7 TPP sing 545 n n 
C6 H61 TPP sing 546 n n 
C6 H62 TPP sing 547 n n 
C7 O7 TPP sing 548 n n 
C7 H71 TPP sing 549 n n 
C7 H72 TPP sing 550 n n 
O7 PA TPP sing 551 n n 
PA O1A TPP doub 552 n n 
PA O2A TPP sing 553 n n 
PA O3A TPP sing 554 n n 
O2A HOA2 TPP sing 555 n n 
O3A PB TPP sing 556 n n 
PB O1B TPP doub 557 n n 
PB O2B TPP sing 558 n n 
PB O3B TPP sing 559 n n 
O2B HOB2 TPP sing 560 n n 
O3B HOB3 TPP sing 561 n n 
#
_atom_sites.entry_id                     6N2O 
_atom_sites.fract_transf_matrix[1][1]    0.011573 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009947 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004949 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 AKG A 1 601 4 AKG AKG . 
F 4 COA A 1 602 5 COA COA . 
G 5 SF4 B 1 401 401 SF4 SF4 . 
H 6 TPP B 1 402 402 TPP TPP . 
I 7 MG B 1 403 403 MG MG . 
J 8 SCA C 1 601 3 SCA SCA . 
K 5 SF4 D 1 401 401 SF4 SF4 . 
L 6 TPP D 1 402 402 TPP TPP . 
M 7 MG D 1 403 403 MG MG . 
N 9 HOH A 1 701 5 HOH HOH . 
N 9 HOH A 2 702 3 HOH HOH . 
N 9 HOH A 3 703 7 HOH HOH . 
N 9 HOH A 4 704 4 HOH HOH . 
N 9 HOH A 5 705 11 HOH HOH . 
N 9 HOH A 6 706 13 HOH HOH . 
N 9 HOH A 7 707 16 HOH HOH . 
N 9 HOH A 8 708 12 HOH HOH . 
O 9 HOH B 1 501 15 HOH HOH . 
O 9 HOH B 2 502 8 HOH HOH . 
O 9 HOH B 3 503 10 HOH HOH . 
O 9 HOH B 4 504 1 HOH HOH . 
O 9 HOH B 5 505 6 HOH HOH . 
O 9 HOH B 6 506 17 HOH HOH . 
P 9 HOH C 1 701 14 HOH HOH . 
P 9 HOH C 2 702 18 HOH HOH . 
P 9 HOH C 3 703 9 HOH HOH . 
P 9 HOH C 4 704 20 HOH HOH . 
P 9 HOH C 5 705 1 HOH HOH . 
P 9 HOH C 6 706 19 HOH HOH . 
Q 9 HOH D 1 501 2 HOH HOH . 
Q 9 HOH D 2 502 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1' TPP . . . L 6 2.876 -0.596 -27.797 1 53 ? N1' TPP 402 D 1 
HETATM 2 C C2' TPP . . . L 6 3.128 -1.686 -27.095 1 50.1 ? C2' TPP 402 D 1 
HETATM 3 C CM2 TPP . . . L 6 3.776 -1.525 -25.713 1 48.79 ? CM2 TPP 402 D 1 
HETATM 4 N N3' TPP . . . L 6 2.843 -2.9 -27.554 1 54.93 ? N3' TPP 402 D 1 
HETATM 5 C C4' TPP . . . L 6 2.274 -3.071 -28.769 1 54.37 ? C4' TPP 402 D 1 
HETATM 6 N N4' TPP . . . L 6 1.966 -4.385 -29.249 1 51.48 ? N4' TPP 402 D 1 
HETATM 7 C C5' TPP . . . L 6 1.994 -1.938 -29.551 1 53.93 ? C5' TPP 402 D 1 
HETATM 8 C C6' TPP . . . L 6 2.314 -0.665 -29.005 1 53.13 ? C6' TPP 402 D 1 
HETATM 9 C C7' TPP . . . L 6 1.315 -2.047 -30.966 1 53.45 ? C7' TPP 402 D 1 
HETATM 10 N N3 TPP . . . L 6 2.175 -2.411 -32.04 1 57.11 ? N3 TPP 402 D 1 
HETATM 11 C C2 TPP . . . L 6 2.192 -3.636 -32.721 1 57.47 ? C2 TPP 402 D 1 
HETATM 12 S S1 TPP . . . L 6 3.286 -3.747 -33.945 1 60.2 ? S1 TPP 402 D 1 
HETATM 13 C C5 TPP . . . L 6 3.754 -2.208 -33.654 1 56.05 ? C5 TPP 402 D 1 
HETATM 14 C C4 TPP . . . L 6 3.086 -1.581 -32.611 1 56.98 ? C4 TPP 402 D 1 
HETATM 15 C CM4 TPP . . . L 6 3.392 -0.143 -32.204 1 53.71 ? CM4 TPP 402 D 1 
HETATM 16 C C6 TPP . . . L 6 4.835 -1.463 -34.436 1 53.77 ? C6 TPP 402 D 1 
HETATM 17 C C7 TPP . . . L 6 5.753 -2.262 -35.415 1 52.04 ? C7 TPP 402 D 1 
HETATM 18 O O7 TPP . . . L 6 6.69 -1.321 -35.981 1 49.71 ? O7 TPP 402 D 1 
HETATM 19 P PA TPP . . . L 6 8.165 -1.798 -36.303 1 47.71 ? PA TPP 402 D 1 
HETATM 20 O O1A TPP . . . L 6 8.87 -0.781 -37.169 1 49.3 ? O1A TPP 402 D 1 
HETATM 21 O O2A TPP . . . L 6 8.933 -1.973 -35.034 1 51.8 ? O2A TPP 402 D 1 
HETATM 22 O O3A TPP . . . L 6 8.111 -3.202 -37.043 1 54.1 ? O3A TPP 402 D 1 
HETATM 23 P PB TPP . . . L 6 7.62 -3.4 -38.547 1 54.42 ? PB TPP 402 D 1 
HETATM 24 O O1B TPP . . . L 6 7.895 -2.138 -39.348 1 47.16 ? O1B TPP 402 D 1 
HETATM 25 O O2B TPP . . . L 6 8.386 -4.556 -39.134 1 54.89 ? O2B TPP 402 D 1 
HETATM 26 O O3B TPP . . . L 6 6.144 -3.709 -38.561 1 50.34 ? O3B TPP 402 D 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           26 
#