data_6N2O # _model_server_result.job_id 3a-QnRJcfa95Nk9ZcZtF9g _model_server_result.datetime_utc '2025-01-10 12:33:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n2o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 6N2O # _exptl.entry_id 6N2O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 146.098 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-OXOGLUTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6N2O _cell.length_a 86.407 _cell.length_b 100.532 _cell.length_c 202.053 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N2O _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 J CS1 SCA . C SCA 601 1_555 L C2 TPP . D TPP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.595 ? metalc ? metalc1 B SG CYS 26 B CYS 26 1_555 G FE4 SF4 . B SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc2 B SG CYS 29 B CYS 29 1_555 G FE2 SF4 . B SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc3 B SG CYS 60 B CYS 60 1_555 G FE3 SF4 . B SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc4 B OD1 ASP 102 B ASP 102 1_555 I MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc5 B OD1 ASN 130 B ASN 130 1_555 I MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc6 B O ILE 132 B ILE 132 1_555 I MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc7 B SG CYS 209 B CYS 209 1_555 G FE1 SF4 . B SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc8 H O2A TPP . B TPP 402 1_555 I MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc9 H O1B TPP . B TPP 402 1_555 I MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc10 I MG MG . B MG 403 1_555 O O HOH . B HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc11 D SG CYS 26 D CYS 26 1_555 K FE4 SF4 . D SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc12 D SG CYS 29 D CYS 29 1_555 K FE2 SF4 . D SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc13 D SG CYS 60 D CYS 60 1_555 K FE3 SF4 . D SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc14 D OD1 ASP 102 D ASP 102 1_555 M MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc15 D OD1 ASN 130 D ASN 130 1_555 M MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc16 D O ILE 132 D ILE 132 1_555 M MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc17 D SG CYS 209 D CYS 209 1_555 K FE1 SF4 . D SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc18 L O1A TPP . D TPP 402 1_555 M MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc19 L O1B TPP . D TPP 402 1_555 M MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc20 M MG MG . D MG 403 1_555 Q O HOH . D HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? # _chem_comp.formula 'C5 H6 O5' _chem_comp.formula_weight 146.098 _chem_comp.id AKG _chem_comp.mon_nstd_flag . _chem_comp.name '2-OXOGLUTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 AKG doub 1 n n C1 O2 AKG sing 2 n n C1 C2 AKG sing 3 n n O2 HO2 AKG sing 4 n n C2 O5 AKG doub 5 n n C2 C3 AKG sing 6 n n C3 C4 AKG sing 7 n n C3 H31 AKG sing 8 n n C3 H32 AKG sing 9 n n C4 C5 AKG sing 10 n n C4 H41 AKG sing 11 n n C4 H42 AKG sing 12 n n C5 O3 AKG doub 13 n n C5 O4 AKG sing 14 n n O4 HO4 AKG sing 15 n n # _atom_sites.entry_id 6N2O _atom_sites.fract_transf_matrix[1][1] 0.011573 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009947 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004949 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 AKG A 1 601 4 AKG AKG . F 4 COA A 1 602 5 COA COA . G 5 SF4 B 1 401 401 SF4 SF4 . H 6 TPP B 1 402 402 TPP TPP . I 7 MG B 1 403 403 MG MG . J 8 SCA C 1 601 3 SCA SCA . K 5 SF4 D 1 401 401 SF4 SF4 . L 6 TPP D 1 402 402 TPP TPP . M 7 MG D 1 403 403 MG MG . N 9 HOH A 1 701 5 HOH HOH . N 9 HOH A 2 702 3 HOH HOH . N 9 HOH A 3 703 7 HOH HOH . N 9 HOH A 4 704 4 HOH HOH . N 9 HOH A 5 705 11 HOH HOH . N 9 HOH A 6 706 13 HOH HOH . N 9 HOH A 7 707 16 HOH HOH . N 9 HOH A 8 708 12 HOH HOH . O 9 HOH B 1 501 15 HOH HOH . O 9 HOH B 2 502 8 HOH HOH . O 9 HOH B 3 503 10 HOH HOH . O 9 HOH B 4 504 1 HOH HOH . O 9 HOH B 5 505 6 HOH HOH . O 9 HOH B 6 506 17 HOH HOH . P 9 HOH C 1 701 14 HOH HOH . P 9 HOH C 2 702 18 HOH HOH . P 9 HOH C 3 703 9 HOH HOH . P 9 HOH C 4 704 20 HOH HOH . P 9 HOH C 5 705 1 HOH HOH . P 9 HOH C 6 706 19 HOH HOH . Q 9 HOH D 1 501 2 HOH HOH . Q 9 HOH D 2 502 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AKG . . . E 3 13.521 6.804 -3.625 1 47.93 ? C1 AKG 601 A 1 HETATM 2 O O1 AKG . . . E 3 12.981 5.683 -4.023 1 47.4 ? O1 AKG 601 A 1 HETATM 3 O O2 AKG . . . E 3 14.6 6.857 -3.046 1 50.14 ? O2 AKG 601 A 1 HETATM 4 C C2 AKG . . . E 3 12.63 8.008 -3.977 1 48.95 ? C2 AKG 601 A 1 HETATM 5 O O5 AKG . . . E 3 11.567 7.814 -4.557 1 47.53 ? O5 AKG 601 A 1 HETATM 6 C C3 AKG . . . E 3 13.079 9.392 -3.589 1 49.74 ? C3 AKG 601 A 1 HETATM 7 C C4 AKG . . . E 3 12.057 10.464 -3.939 1 47.61 ? C4 AKG 601 A 1 HETATM 8 C C5 AKG . . . E 3 12.298 11.775 -3.244 1 53.15 ? C5 AKG 601 A 1 HETATM 9 O O3 AKG . . . E 3 12.313 12.847 -3.823 1 52.5 ? O3 AKG 601 A 1 HETATM 10 O O4 AKG . . . E 3 12.482 11.651 -1.948 1 54.46 ? O4 AKG 601 A 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 946 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #