data_6N2O # _model_server_result.job_id Hb0198bRd4vgPinYPd-Uow _model_server_result.datetime_utc '2025-01-10 12:21:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n2o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 6N2O # _exptl.entry_id 6N2O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6N2O _cell.length_a 86.407 _cell.length_b 100.532 _cell.length_c 202.053 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N2O _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 J CS1 SCA . C SCA 601 1_555 L C2 TPP . D TPP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.595 ? metalc ? metalc1 B SG CYS 26 B CYS 26 1_555 G FE4 SF4 . B SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc2 B SG CYS 29 B CYS 29 1_555 G FE2 SF4 . B SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc3 B SG CYS 60 B CYS 60 1_555 G FE3 SF4 . B SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc4 B OD1 ASP 102 B ASP 102 1_555 I MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc5 B OD1 ASN 130 B ASN 130 1_555 I MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc6 B O ILE 132 B ILE 132 1_555 I MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc7 B SG CYS 209 B CYS 209 1_555 G FE1 SF4 . B SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc8 H O2A TPP . B TPP 402 1_555 I MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc9 H O1B TPP . B TPP 402 1_555 I MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc10 I MG MG . B MG 403 1_555 O O HOH . B HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc11 D SG CYS 26 D CYS 26 1_555 K FE4 SF4 . D SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc12 D SG CYS 29 D CYS 29 1_555 K FE2 SF4 . D SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc13 D SG CYS 60 D CYS 60 1_555 K FE3 SF4 . D SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc14 D OD1 ASP 102 D ASP 102 1_555 M MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc15 D OD1 ASN 130 D ASN 130 1_555 M MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc16 D O ILE 132 D ILE 132 1_555 M MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc17 D SG CYS 209 D CYS 209 1_555 K FE1 SF4 . D SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc18 L O1A TPP . D TPP 402 1_555 M MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc19 L O1B TPP . D TPP 402 1_555 M MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc20 M MG MG . D MG 403 1_555 Q O HOH . D HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 85 n y N1A C6A COA doub 86 n y C2A N3A COA doub 87 n y C2A H2A COA sing 88 n n N3A C4A COA sing 89 n y C4A C5A COA doub 90 n y C4A N9A COA sing 91 n y C5A C6A COA sing 92 n y C5A N7A COA sing 93 n y C6A N6A COA sing 94 n n N6A H61A COA sing 95 n n N6A H62A COA sing 96 n n N7A C8A COA doub 97 n y C8A N9A COA sing 98 n y C8A H8A COA sing 99 n n N9A C1B COA sing 100 n n C1B C2B COA sing 101 n n C1B O4B COA sing 102 n n C1B H1B COA sing 103 n n C2B O2B COA sing 104 n n C2B C3B COA sing 105 n n C2B H2B COA sing 106 n n O2B HO2A COA sing 107 n n C3B O3B COA sing 108 n n C3B C4B COA sing 109 n n C3B H3B COA sing 110 n n O3B P3B COA sing 111 n n P3B O7A COA doub 112 n n P3B O8A COA sing 113 n n P3B O9A COA sing 114 n n O8A HOA8 COA sing 115 n n O9A HOA9 COA sing 116 n n C4B O4B COA sing 117 n n C4B C5B COA sing 118 n n C4B H4B COA sing 119 n n C5B O5B COA sing 120 n n C5B H51A COA sing 121 n n C5B H52A COA sing 122 n n O5B P1A COA sing 123 n n P1A O1A COA doub 124 n n P1A O2A COA sing 125 n n P1A O3A COA sing 126 n n O2A HOA2 COA sing 127 n n O3A P2A COA sing 128 n n P2A O4A COA doub 129 n n P2A O5A COA sing 130 n n P2A O6A COA sing 131 n n O5A HOA5 COA sing 132 n n O6A CCP COA sing 133 n n CBP CCP COA sing 134 n n CBP CDP COA sing 135 n n CBP CEP COA sing 136 n n CBP CAP COA sing 137 n n CCP H121 COA sing 138 n n CCP H122 COA sing 139 n n CDP H131 COA sing 140 n n CDP H132 COA sing 141 n n CDP H133 COA sing 142 n n CEP H141 COA sing 143 n n CEP H142 COA sing 144 n n CEP H143 COA sing 145 n n CAP OAP COA sing 146 n n CAP C9P COA sing 147 n n CAP H10 COA sing 148 n n OAP HO1 COA sing 149 n n C9P O9P COA doub 150 n n C9P N8P COA sing 151 n n N8P C7P COA sing 152 n n N8P HN8 COA sing 153 n n C7P C6P COA sing 154 n n C7P H71 COA sing 155 n n C7P H72 COA sing 156 n n C6P C5P COA sing 157 n n C6P H61 COA sing 158 n n C6P H62 COA sing 159 n n C5P O5P COA doub 160 n n C5P N4P COA sing 161 n n N4P C3P COA sing 162 n n N4P HN4 COA sing 163 n n C3P C2P COA sing 164 n n C3P H31 COA sing 165 n n C3P H32 COA sing 166 n n C2P S1P COA sing 167 n n C2P H21 COA sing 168 n n C2P H22 COA sing 169 n n S1P HS1 COA sing 170 n n # _atom_sites.entry_id 6N2O _atom_sites.fract_transf_matrix[1][1] 0.011573 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009947 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004949 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 AKG A 1 601 4 AKG AKG . F 4 COA A 1 602 5 COA COA . G 5 SF4 B 1 401 401 SF4 SF4 . H 6 TPP B 1 402 402 TPP TPP . I 7 MG B 1 403 403 MG MG . J 8 SCA C 1 601 3 SCA SCA . K 5 SF4 D 1 401 401 SF4 SF4 . L 6 TPP D 1 402 402 TPP TPP . M 7 MG D 1 403 403 MG MG . N 9 HOH A 1 701 5 HOH HOH . N 9 HOH A 2 702 3 HOH HOH . N 9 HOH A 3 703 7 HOH HOH . N 9 HOH A 4 704 4 HOH HOH . N 9 HOH A 5 705 11 HOH HOH . N 9 HOH A 6 706 13 HOH HOH . N 9 HOH A 7 707 16 HOH HOH . N 9 HOH A 8 708 12 HOH HOH . O 9 HOH B 1 501 15 HOH HOH . O 9 HOH B 2 502 8 HOH HOH . O 9 HOH B 3 503 10 HOH HOH . O 9 HOH B 4 504 1 HOH HOH . O 9 HOH B 5 505 6 HOH HOH . O 9 HOH B 6 506 17 HOH HOH . P 9 HOH C 1 701 14 HOH HOH . P 9 HOH C 2 702 18 HOH HOH . P 9 HOH C 3 703 9 HOH HOH . P 9 HOH C 4 704 20 HOH HOH . P 9 HOH C 5 705 1 HOH HOH . P 9 HOH C 6 706 19 HOH HOH . Q 9 HOH D 1 501 2 HOH HOH . Q 9 HOH D 2 502 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . F 4 33.288 5.777 18.018 1 95.12 ? N1A COA 602 A 1 HETATM 2 C C2A COA . . . F 4 33.853 5.726 16.793 1 96.04 ? C2A COA 602 A 1 HETATM 3 N N3A COA . . . F 4 33.247 5.114 15.762 1 96.74 ? N3A COA 602 A 1 HETATM 4 C C4A COA . . . F 4 32.03 4.538 15.99 1 97.21 ? C4A COA 602 A 1 HETATM 5 C C5A COA . . . F 4 31.425 4.575 17.224 1 95.85 ? C5A COA 602 A 1 HETATM 6 C C6A COA . . . F 4 32.078 5.212 18.26 1 93.68 ? C6A COA 602 A 1 HETATM 7 N N6A COA . . . F 4 31.515 5.267 19.491 1 88.12 ? N6A COA 602 A 1 HETATM 8 N N7A COA . . . F 4 30.23 3.921 17.128 1 93.77 ? N7A COA 602 A 1 HETATM 9 C C8A COA . . . F 4 30.047 3.462 15.86 1 95.44 ? C8A COA 602 A 1 HETATM 10 N N9A COA . . . F 4 31.215 3.865 15.096 1 98.53 ? N9A COA 602 A 1 HETATM 11 C C1B COA . . . F 4 31.514 3.322 13.77 1 104.14 ? C1B COA 602 A 1 HETATM 12 C C2B COA . . . F 4 30.415 2.354 13.316 1 104.11 ? C2B COA 602 A 1 HETATM 13 O O2B COA . . . F 4 30.785 0.97 13.404 1 104.77 ? O2B COA 602 A 1 HETATM 14 C C3B COA . . . F 4 30.084 2.762 11.901 1 105.33 ? C3B COA 602 A 1 HETATM 15 O O3B COA . . . F 4 30.979 2.077 11.023 1 107.86 ? O3B COA 602 A 1 HETATM 16 P P3B COA . . . F 4 30.624 0.728 10.214 1 113.36 ? P3B COA 602 A 1 HETATM 17 O O7A COA . . . F 4 31.844 -0.149 10.369 1 109.33 ? O7A COA 602 A 1 HETATM 18 O O8A COA . . . F 4 30.382 1.175 8.79 1 105.99 ? O8A COA 602 A 1 HETATM 19 O O9A COA . . . F 4 29.398 0.163 10.893 1 108.56 ? O9A COA 602 A 1 HETATM 20 C C4B COA . . . F 4 30.465 4.233 11.902 1 104.9 ? C4B COA 602 A 1 HETATM 21 O O4B COA . . . F 4 31.642 4.277 12.722 1 105.13 ? O4B COA 602 A 1 HETATM 22 C C5B COA . . . F 4 29.417 5.175 12.488 1 100.89 ? C5B COA 602 A 1 HETATM 23 O O5B COA . . . F 4 28.152 4.997 11.85 1 101.24 ? O5B COA 602 A 1 HETATM 24 P P1A COA . . . F 4 26.999 4.169 12.61 1 99.18 ? P1A COA 602 A 1 HETATM 25 O O1A COA . . . F 4 27.563 3.813 13.951 1 93.26 ? O1A COA 602 A 1 HETATM 26 O O2A COA . . . F 4 26.512 3.055 11.723 1 97.75 ? O2A COA 602 A 1 HETATM 27 O O3A COA . . . F 4 25.756 5.166 12.866 1 87.28 ? O3A COA 602 A 1 HETATM 28 P P2A COA . . . F 4 25.643 6.696 13.383 1 89.06 ? P2A COA 602 A 1 HETATM 29 O O4A COA . . . F 4 26.959 7.121 13.982 1 84.42 ? O4A COA 602 A 1 HETATM 30 O O5A COA . . . F 4 24.37 6.874 14.169 1 77.61 ? O5A COA 602 A 1 HETATM 31 O O6A COA . . . F 4 25.444 7.425 11.86 1 88.19 ? O6A COA 602 A 1 HETATM 32 C CBP COA . . . F 4 24.179 7.915 9.819 1 85.98 ? CBP COA 602 A 1 HETATM 33 C CCP COA . . . F 4 24.253 7.124 11.121 1 85.62 ? CCP COA 602 A 1 HETATM 34 C CDP COA . . . F 4 24.485 9.388 10.06 1 82.06 ? CDP COA 602 A 1 HETATM 35 C CEP COA . . . F 4 22.738 7.98 9.332 1 81.98 ? CEP COA 602 A 1 HETATM 36 C CAP COA . . . F 4 25.088 7.31 8.736 1 87.14 ? CAP COA 602 A 1 HETATM 37 O OAP COA . . . F 4 24.787 5.9 8.603 1 85.98 ? OAP COA 602 A 1 HETATM 38 C C9P COA . . . F 4 25.118 8.004 7.385 1 86.29 ? C9P COA 602 A 1 HETATM 39 O O9P COA . . . F 4 25.763 9.031 7.215 1 85.13 ? O9P COA 602 A 1 HETATM 40 N N8P COA . . . F 4 24.427 7.417 6.411 1 83.42 ? N8P COA 602 A 1 HETATM 41 C C7P COA . . . F 4 24.275 7.835 5.015 1 72.15 ? C7P COA 602 A 1 HETATM 42 C C6P COA . . . F 4 23.077 7.095 4.41 1 71.12 ? C6P COA 602 A 1 HETATM 43 C C5P COA . . . F 4 22.975 5.685 4.967 1 75.8 ? C5P COA 602 A 1 HETATM 44 O O5P COA . . . F 4 21.985 5.319 5.596 1 75.89 ? O5P COA 602 A 1 HETATM 45 N N4P COA . . . F 4 24.001 4.853 4.763 1 76.15 ? N4P COA 602 A 1 HETATM 46 C C3P COA . . . F 4 24.142 3.462 5.201 1 78.9 ? C3P COA 602 A 1 HETATM 47 C C2P COA . . . F 4 23.875 2.536 4.017 1 75.33 ? C2P COA 602 A 1 HETATM 48 S S1P COA . . . F 4 25.073 2.783 2.678 1 82.39 ? S1P COA 602 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #