data_6N30 # _model_server_result.job_id oIqbF4qVhXazr5t3iey0Dg _model_server_result.datetime_utc '2024-11-04 23:13:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n30 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":600}' # _entry.id 6N30 # _exptl.entry_id 6N30 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6N30 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N30 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 W N N ? 10 Y N N ? 10 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D O ALA 35 c3 ALA 35 1_555 U CD GLU 31 H GLU 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.242 ? covale ? covale2 D N ARG 36 c3 ARG 36 1_555 U OE2 GLU 31 H GLU 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale3 N CA GLY 174 C GLY 174 1_555 W O1A ATP . C ATP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? metalc ? metalc1 N OG1 THR 176 C THR 176 1_555 X MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc2 O OG1 THR 176 A THR 176 1_555 Z MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? covale ? covale4 P NE2 GLN 172 B GLN 172 1_555 AA O1G ATP . B ATP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale5 P CA GLY 174 B GLY 174 1_555 AA O1A ATP . B ATP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? metalc ? metalc3 P OG1 THR 176 B THR 176 1_555 BA MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc4 S OG1 THR 165 E THR 165 1_555 EA MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc5 W O2G ATP . C ATP 600 1_555 X MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc6 W O2B ATP . C ATP 600 1_555 X MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc7 W O3B ATP . C ATP 600 1_555 X MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? metalc ? metalc8 Y O2B ATP . A ATP 600 1_555 Z MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc9 AA O3G ATP . B ATP 600 1_555 BA MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc10 AA O2B ATP . B ATP 600 1_555 BA MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc11 DA O2B ADP . E ADP 600 1_555 EA MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6N30 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 10 ATP C 1 600 600 ATP ATP . X 11 MG C 1 601 601 MG MG . Y 10 ATP A 1 600 600 ATP ATP . Z 11 MG A 1 601 601 MG MG . AA 10 ATP B 1 600 600 ATP ATP . BA 11 MG B 1 601 601 MG MG . CA 12 PO4 D 1 600 600 PO4 PO4 . DA 13 ADP E 1 600 600 ADP ADP . EA 11 MG E 1 601 601 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . AA 10 140.982 190.061 231.498 1 54.63 ? PG ATP 600 B 1 HETATM 2 O O1G ATP . . . AA 10 140.883 191.317 230.669 1 54.63 ? O1G ATP 600 B 1 HETATM 3 O O2G ATP . . . AA 10 142.376 189.768 231.989 1 54.63 ? O2G ATP 600 B 1 HETATM 4 O O3G ATP . . . AA 10 139.951 189.909 232.583 1 54.63 ? O3G ATP 600 B 1 HETATM 5 P PB ATP . . . AA 10 139.276 188.467 229.85 1 54.63 ? PB ATP 600 B 1 HETATM 6 O O1B ATP . . . AA 10 139.492 187.201 229.069 1 54.63 ? O1B ATP 600 B 1 HETATM 7 O O2B ATP . . . AA 10 138.2 188.53 230.887 1 54.63 ? O2B ATP 600 B 1 HETATM 8 O O3B ATP . . . AA 10 140.712 188.862 230.459 1 54.63 ? O3B ATP 600 B 1 HETATM 9 P PA ATP . . . AA 10 137.604 189.548 227.921 1 54.63 ? PA ATP 600 B 1 HETATM 10 O O1A ATP . . . AA 10 137.597 188.282 227.073 1 54.63 ? O1A ATP 600 B 1 HETATM 11 O O2A ATP . . . AA 10 136.493 189.855 228.883 1 54.63 ? O2A ATP 600 B 1 HETATM 12 O O3A ATP . . . AA 10 138.961 189.591 228.766 1 54.63 ? O3A ATP 600 B 1 HETATM 13 O O5' ATP . . . AA 10 137.799 190.852 227.004 1 54.63 ? O5' ATP 600 B 1 HETATM 14 C C5' ATP . . . AA 10 137.881 190.735 225.594 1 54.63 ? C5' ATP 600 B 1 HETATM 15 C C4' ATP . . . AA 10 137.563 192.06 224.941 1 54.63 ? C4' ATP 600 B 1 HETATM 16 O O4' ATP . . . AA 10 137.149 191.801 223.603 1 54.63 ? O4' ATP 600 B 1 HETATM 17 C C3' ATP . . . AA 10 136.4 192.72 225.648 1 54.63 ? C3' ATP 600 B 1 HETATM 18 O O3' ATP . . . AA 10 136.768 194.031 226.068 1 54.63 ? O3' ATP 600 B 1 HETATM 19 C C2' ATP . . . AA 10 135.313 192.853 224.615 1 54.63 ? C2' ATP 600 B 1 HETATM 20 O O2' ATP . . . AA 10 134.822 194.192 224.647 1 54.63 ? O2' ATP 600 B 1 HETATM 21 C C1' ATP . . . AA 10 135.992 192.57 223.288 1 54.63 ? C1' ATP 600 B 1 HETATM 22 N N9 ATP . . . AA 10 135.114 191.808 222.369 1 54.63 ? N9 ATP 600 B 1 HETATM 23 C C8 ATP . . . AA 10 134.613 192.258 221.204 1 54.63 ? C8 ATP 600 B 1 HETATM 24 N N7 ATP . . . AA 10 133.842 191.317 220.601 1 54.63 ? N7 ATP 600 B 1 HETATM 25 C C5 ATP . . . AA 10 133.847 190.241 221.398 1 54.63 ? C5 ATP 600 B 1 HETATM 26 C C6 ATP . . . AA 10 133.243 188.901 221.363 1 54.63 ? C6 ATP 600 B 1 HETATM 27 N N6 ATP . . . AA 10 132.459 188.529 220.332 1 54.63 ? N6 ATP 600 B 1 HETATM 28 N N1 ATP . . . AA 10 133.493 188.072 222.391 1 54.63 ? N1 ATP 600 B 1 HETATM 29 C C2 ATP . . . AA 10 134.275 188.44 223.418 1 54.63 ? C2 ATP 600 B 1 HETATM 30 N N3 ATP . . . AA 10 134.856 189.643 223.52 1 54.63 ? N3 ATP 600 B 1 HETATM 31 C C4 ATP . . . AA 10 134.683 190.568 222.558 1 54.63 ? C4 ATP 600 B 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 73 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #