data_6N30 # _model_server_result.job_id 5axN55l7Y3Ea0Y6lCSwcdw _model_server_result.datetime_utc '2024-11-04 23:11:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n30 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":600}' # _entry.id 6N30 # _exptl.entry_id 6N30 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6N30 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N30 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 13 _struct_asym.id DA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D O ALA 35 c3 ALA 35 1_555 U CD GLU 31 H GLU 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.242 ? covale ? covale2 D N ARG 36 c3 ARG 36 1_555 U OE2 GLU 31 H GLU 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale3 N CA GLY 174 C GLY 174 1_555 W O1A ATP . C ATP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? metalc ? metalc1 N OG1 THR 176 C THR 176 1_555 X MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc2 O OG1 THR 176 A THR 176 1_555 Z MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? covale ? covale4 P NE2 GLN 172 B GLN 172 1_555 AA O1G ATP . B ATP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale5 P CA GLY 174 B GLY 174 1_555 AA O1A ATP . B ATP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? metalc ? metalc3 P OG1 THR 176 B THR 176 1_555 BA MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc4 S OG1 THR 165 E THR 165 1_555 EA MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc5 W O2G ATP . C ATP 600 1_555 X MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc6 W O2B ATP . C ATP 600 1_555 X MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc7 W O3B ATP . C ATP 600 1_555 X MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? metalc ? metalc8 Y O2B ATP . A ATP 600 1_555 Z MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc9 AA O3G ATP . B ATP 600 1_555 BA MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc10 AA O2B ATP . B ATP 600 1_555 BA MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc11 DA O2B ADP . E ADP 600 1_555 EA MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6N30 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 10 ATP C 1 600 600 ATP ATP . X 11 MG C 1 601 601 MG MG . Y 10 ATP A 1 600 600 ATP ATP . Z 11 MG A 1 601 601 MG MG . AA 10 ATP B 1 600 600 ATP ATP . BA 11 MG B 1 601 601 MG MG . CA 12 PO4 D 1 600 600 PO4 PO4 . DA 13 ADP E 1 600 600 ADP ADP . EA 11 MG E 1 601 601 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . DA 13 162.852 203.77 230.82 1 48.61 ? PB ADP 600 E 1 HETATM 2 O O1B ADP . . . DA 13 162.056 203.136 229.721 1 48.61 ? O1B ADP 600 E 1 HETATM 3 O O2B ADP . . . DA 13 162.055 204.548 231.826 1 48.61 ? O2B ADP 600 E 1 HETATM 4 O O3B ADP . . . DA 13 163.863 202.828 231.412 1 48.61 ? O3B ADP 600 E 1 HETATM 5 P PA ADP . . . DA 13 163.271 205.983 229.036 1 48.61 ? PA ADP 600 E 1 HETATM 6 O O1A ADP . . . DA 13 161.885 205.7 228.563 1 48.61 ? O1A ADP 600 E 1 HETATM 7 O O2A ADP . . . DA 13 163.547 207.353 229.579 1 48.61 ? O2A ADP 600 E 1 HETATM 8 O O3A ADP . . . DA 13 163.746 204.92 230.143 1 48.61 ? O3A ADP 600 E 1 HETATM 9 O O5' ADP . . . DA 13 164.288 205.805 227.821 1 48.61 ? O5' ADP 600 E 1 HETATM 10 C C5' ADP . . . DA 13 163.802 205.376 226.566 1 48.61 ? C5' ADP 600 E 1 HETATM 11 C C4' ADP . . . DA 13 164.87 205.595 225.512 1 48.61 ? C4' ADP 600 E 1 HETATM 12 O O4' ADP . . . DA 13 164.294 205.4 224.225 1 48.61 ? O4' ADP 600 E 1 HETATM 13 C C3' ADP . . . DA 13 165.392 207.008 225.568 1 48.61 ? C3' ADP 600 E 1 HETATM 14 O O3' ADP . . . DA 13 166.801 206.94 225.691 1 48.61 ? O3' ADP 600 E 1 HETATM 15 C C2' ADP . . . DA 13 165.105 207.623 224.231 1 48.61 ? C2' ADP 600 E 1 HETATM 16 O O2' ADP . . . DA 13 166.355 207.937 223.624 1 48.61 ? O2' ADP 600 E 1 HETATM 17 C C1' ADP . . . DA 13 164.41 206.557 223.413 1 48.61 ? C1' ADP 600 E 1 HETATM 18 N N9 ADP . . . DA 13 163.036 206.984 223.085 1 48.61 ? N9 ADP 600 E 1 HETATM 19 C C8 ADP . . . DA 13 161.951 206.701 223.817 1 48.61 ? C8 ADP 600 E 1 HETATM 20 N N7 ADP . . . DA 13 160.828 207.22 223.272 1 48.61 ? N7 ADP 600 E 1 HETATM 21 C C5 ADP . . . DA 13 161.196 207.851 222.154 1 48.61 ? C5 ADP 600 E 1 HETATM 22 C C6 ADP . . . DA 13 160.505 208.618 221.106 1 48.61 ? C6 ADP 600 E 1 HETATM 23 N N6 ADP . . . DA 13 159.168 208.799 221.148 1 48.61 ? N6 ADP 600 E 1 HETATM 24 N N1 ADP . . . DA 13 161.253 209.112 220.102 1 48.61 ? N1 ADP 600 E 1 HETATM 25 C C2 ADP . . . DA 13 162.583 208.93 220.054 1 48.61 ? C2 ADP 600 E 1 HETATM 26 N N3 ADP . . . DA 13 163.277 208.25 220.975 1 48.61 ? N3 ADP 600 E 1 HETATM 27 C C4 ADP . . . DA 13 162.649 207.696 222.032 1 48.61 ? C4 ADP 600 E 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #