data_6N3G # _model_server_result.job_id R70aNB3vsEthHO5rc_Xa3g _model_server_result.datetime_utc '2024-11-23 21:29:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n3g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6N3G # _exptl.entry_id 6N3G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6N3G _cell.length_a 151.84 _cell.length_b 151.84 _cell.length_c 53.74 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N3G _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 52 A CYS 52 1_555 K ZN ZN . A ZN 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc2 A SG CYS 55 A CYS 55 1_555 K ZN ZN . A ZN 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc3 A SG CYS 65 A CYS 65 1_555 L ZN ZN . A ZN 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc4 A SG CYS 68 A CYS 68 1_555 L ZN ZN . A ZN 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc5 A SG CYS 74 A CYS 74 1_555 K ZN ZN . A ZN 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc6 A SG CYS 78 A CYS 78 1_555 K ZN ZN . A ZN 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc7 A NE2 HIS 86 A HIS 86 1_555 L ZN ZN . A ZN 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc8 A SG CYS 90 A CYS 90 1_555 L ZN ZN . A ZN 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc9 A SG CYS 209 A CYS 209 1_555 M ZN ZN . A ZN 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc10 A SG CYS 262 A CYS 262 1_555 M ZN ZN . A ZN 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc11 A SG CYS 264 A CYS 264 1_555 M ZN ZN . A ZN 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc12 A SG CYS 267 A CYS 267 1_555 M ZN ZN . A ZN 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 371 n n N HN1 SAH sing 372 n n N HN2 SAH sing 373 n n CA CB SAH sing 374 n n CA C SAH sing 375 n n CA HA SAH sing 376 n n CB CG SAH sing 377 n n CB HB1 SAH sing 378 n n CB HB2 SAH sing 379 n n CG SD SAH sing 380 n n CG HG1 SAH sing 381 n n CG HG2 SAH sing 382 n n SD C5' SAH sing 383 n n C O SAH doub 384 n n C OXT SAH sing 385 n n OXT HXT SAH sing 386 n n C5' C4' SAH sing 387 n n C5' "H5'1" SAH sing 388 n n C5' "H5'2" SAH sing 389 n n C4' O4' SAH sing 390 n n C4' C3' SAH sing 391 n n C4' H4' SAH sing 392 n n O4' C1' SAH sing 393 n n C3' O3' SAH sing 394 n n C3' C2' SAH sing 395 n n C3' H3' SAH sing 396 n n O3' HO3' SAH sing 397 n n C2' O2' SAH sing 398 n n C2' C1' SAH sing 399 n n C2' H2' SAH sing 400 n n O2' HO2' SAH sing 401 n n C1' N9 SAH sing 402 n n C1' H1' SAH sing 403 n n N9 C8 SAH sing 404 n y N9 C4 SAH sing 405 n y C8 N7 SAH doub 406 n y C8 H8 SAH sing 407 n n N7 C5 SAH sing 408 n y C5 C6 SAH sing 409 n y C5 C4 SAH doub 410 n y C6 N6 SAH sing 411 n n C6 N1 SAH doub 412 n y N6 HN61 SAH sing 413 n n N6 HN62 SAH sing 414 n n N1 C2 SAH sing 415 n y C2 N3 SAH doub 416 n y C2 H2 SAH sing 417 n n N3 C4 SAH sing 418 n y # _atom_sites.entry_id 6N3G _atom_sites.fract_transf_matrix[1][1] 0.006586 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006586 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018608 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 501 504 SAH SAH . C 3 12P A 1 502 505 12P PE8 . D 4 NI A 1 503 1 NI NI . E 4 NI A 1 504 2 NI NI . F 5 EOH A 1 505 1 EOH EOH . G 5 EOH A 1 506 2 EOH EOH . H 5 EOH A 1 507 3 EOH EOH . I 5 EOH A 1 508 4 EOH EOH . J 5 EOH A 1 509 5 EOH EOH . K 6 ZN A 1 510 507 ZN ZN . L 6 ZN A 1 511 508 ZN ZN . M 6 ZN A 1 512 509 ZN ZN . N 7 HOH A 1 601 3 HOH HOH . N 7 HOH A 2 602 21 HOH HOH . N 7 HOH A 3 603 46 HOH HOH . N 7 HOH A 4 604 27 HOH HOH . N 7 HOH A 5 605 59 HOH HOH . N 7 HOH A 6 606 25 HOH HOH . N 7 HOH A 7 607 54 HOH HOH . N 7 HOH A 8 608 29 HOH HOH . N 7 HOH A 9 609 44 HOH HOH . N 7 HOH A 10 610 60 HOH HOH . N 7 HOH A 11 611 47 HOH HOH . N 7 HOH A 12 612 23 HOH HOH . N 7 HOH A 13 613 28 HOH HOH . N 7 HOH A 14 614 8 HOH HOH . N 7 HOH A 15 615 57 HOH HOH . N 7 HOH A 16 616 45 HOH HOH . N 7 HOH A 17 617 7 HOH HOH . N 7 HOH A 18 618 9 HOH HOH . N 7 HOH A 19 619 72 HOH HOH . N 7 HOH A 20 620 15 HOH HOH . N 7 HOH A 21 621 38 HOH HOH . N 7 HOH A 22 622 16 HOH HOH . N 7 HOH A 23 623 14 HOH HOH . N 7 HOH A 24 624 2 HOH HOH . N 7 HOH A 25 625 55 HOH HOH . N 7 HOH A 26 626 5 HOH HOH . N 7 HOH A 27 627 30 HOH HOH . N 7 HOH A 28 628 35 HOH HOH . N 7 HOH A 29 629 26 HOH HOH . N 7 HOH A 30 630 74 HOH HOH . N 7 HOH A 31 631 22 HOH HOH . N 7 HOH A 32 632 19 HOH HOH . N 7 HOH A 33 633 18 HOH HOH . N 7 HOH A 34 634 6 HOH HOH . N 7 HOH A 35 635 61 HOH HOH . N 7 HOH A 36 636 1 HOH HOH . N 7 HOH A 37 637 64 HOH HOH . N 7 HOH A 38 638 40 HOH HOH . N 7 HOH A 39 639 4 HOH HOH . N 7 HOH A 40 640 34 HOH HOH . N 7 HOH A 41 641 39 HOH HOH . N 7 HOH A 42 642 12 HOH HOH . N 7 HOH A 43 643 58 HOH HOH . N 7 HOH A 44 644 11 HOH HOH . N 7 HOH A 45 645 36 HOH HOH . N 7 HOH A 46 646 10 HOH HOH . N 7 HOH A 47 647 52 HOH HOH . N 7 HOH A 48 648 20 HOH HOH . N 7 HOH A 49 649 24 HOH HOH . N 7 HOH A 50 650 76 HOH HOH . N 7 HOH A 51 651 50 HOH HOH . N 7 HOH A 52 652 48 HOH HOH . N 7 HOH A 53 653 31 HOH HOH . N 7 HOH A 54 654 53 HOH HOH . N 7 HOH A 55 655 17 HOH HOH . N 7 HOH A 56 656 75 HOH HOH . N 7 HOH A 57 657 62 HOH HOH . N 7 HOH A 58 658 41 HOH HOH . N 7 HOH A 59 659 32 HOH HOH . N 7 HOH A 60 660 73 HOH HOH . N 7 HOH A 61 661 71 HOH HOH . N 7 HOH A 62 662 13 HOH HOH . N 7 HOH A 63 663 67 HOH HOH . N 7 HOH A 64 664 66 HOH HOH . N 7 HOH A 65 665 65 HOH HOH . N 7 HOH A 66 666 77 HOH HOH . N 7 HOH A 67 667 70 HOH HOH . N 7 HOH A 68 668 33 HOH HOH . N 7 HOH A 69 669 51 HOH HOH . N 7 HOH A 70 670 69 HOH HOH . N 7 HOH A 71 671 43 HOH HOH . N 7 HOH A 72 672 49 HOH HOH . N 7 HOH A 73 673 56 HOH HOH . N 7 HOH A 74 674 78 HOH HOH . N 7 HOH A 75 675 63 HOH HOH . N 7 HOH A 76 676 68 HOH HOH . N 7 HOH A 77 677 79 HOH HOH . N 7 HOH A 78 678 37 HOH HOH . N 7 HOH A 79 679 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 168.546 58.427 8.315 1 23.1 ? N SAH 501 A 1 HETATM 2 C CA SAH . . . B 2 167.529 58.014 7.348 1 26.44 ? CA SAH 501 A 1 HETATM 3 C CB SAH . . . B 2 167.697 56.548 7.01 1 24.6 ? CB SAH 501 A 1 HETATM 4 C CG SAH . . . B 2 168.326 56.25 5.643 1 23.31 ? CG SAH 501 A 1 HETATM 5 S SD SAH . . . B 2 167.642 56.925 4.089 1 25.43 ? SD SAH 501 A 1 HETATM 6 C C SAH . . . B 2 166.125 58.296 7.899 1 28.86 ? C SAH 501 A 1 HETATM 7 O O SAH . . . B 2 165.083 58.202 7.237 1 27.77 ? O SAH 501 A 1 HETATM 8 O OXT SAH . . . B 2 166.004 58.661 9.068 1 27.88 ? OXT SAH 501 A 1 HETATM 9 C C5' SAH . . . B 2 169.104 57.964 3.732 1 22.32 ? C5' SAH 501 A 1 HETATM 10 C C4' SAH . . . B 2 169.236 59.313 4.448 1 25.21 ? C4' SAH 501 A 1 HETATM 11 O O4' SAH . . . B 2 170.002 59.074 5.607 1 26.48 ? O4' SAH 501 A 1 HETATM 12 C C3' SAH . . . B 2 170.155 60.272 3.705 1 25.23 ? C3' SAH 501 A 1 HETATM 13 O O3' SAH . . . B 2 169.447 61.125 2.844 1 25.92 ? O3' SAH 501 A 1 HETATM 14 C C2' SAH . . . B 2 170.812 61.12 4.763 1 27.5 ? C2' SAH 501 A 1 HETATM 15 O O2' SAH . . . B 2 169.968 62.156 5.203 1 26.41 ? O2' SAH 501 A 1 HETATM 16 C C1' SAH . . . B 2 170.874 60.14 5.89 1 28.25 ? C1' SAH 501 A 1 HETATM 17 N N9 SAH . . . B 2 172.18 59.497 6.021 1 25.93 ? N9 SAH 501 A 1 HETATM 18 C C8 SAH . . . B 2 172.474 58.206 5.697 1 22.86 ? C8 SAH 501 A 1 HETATM 19 N N7 SAH . . . B 2 173.777 57.974 5.997 1 25.62 ? N7 SAH 501 A 1 HETATM 20 C C5 SAH . . . B 2 174.302 59.1 6.503 1 27.72 ? C5 SAH 501 A 1 HETATM 21 C C6 SAH . . . B 2 175.559 59.419 6.963 1 30.01 ? C6 SAH 501 A 1 HETATM 22 N N6 SAH . . . B 2 176.535 58.539 6.977 1 20.9 ? N6 SAH 501 A 1 HETATM 23 N N1 SAH . . . B 2 175.81 60.673 7.436 1 23.42 ? N1 SAH 501 A 1 HETATM 24 C C2 SAH . . . B 2 174.808 61.625 7.455 1 28.33 ? C2 SAH 501 A 1 HETATM 25 N N3 SAH . . . B 2 173.55 61.309 6.993 1 26.86 ? N3 SAH 501 A 1 HETATM 26 C C4 SAH . . . B 2 173.304 60.06 6.538 1 27.45 ? C4 SAH 501 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 26 #