data_6N3G
#
_model_server_result.job_id            bjT1oGE_dYqR0h1lePzeWA 
_model_server_result.datetime_utc      '2024-11-27 15:17:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6n3g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    6N3G 
#
_exptl.entry_id    6N3G 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6N3G 
_cell.length_a            151.84 
_cell.length_b            151.84 
_cell.length_c            53.74 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6N3G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 52 A CYS 52 1_555 K ZN ZN . A ZN 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
metalc ? metalc2 A SG CYS 55 A CYS 55 1_555 K ZN ZN . A ZN 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc3 A SG CYS 65 A CYS 65 1_555 L ZN ZN . A ZN 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc4 A SG CYS 68 A CYS 68 1_555 L ZN ZN . A ZN 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc5 A SG CYS 74 A CYS 74 1_555 K ZN ZN . A ZN 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc6 A SG CYS 78 A CYS 78 1_555 K ZN ZN . A ZN 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc7 A NE2 HIS 86 A HIS 86 1_555 L ZN ZN . A ZN 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc8 A SG CYS 90 A CYS 90 1_555 L ZN ZN . A ZN 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc9 A SG CYS 209 A CYS 209 1_555 M ZN ZN . A ZN 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc10 A SG CYS 262 A CYS 262 1_555 M ZN ZN . A ZN 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc11 A SG CYS 264 A CYS 264 1_555 M ZN ZN . A ZN 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc12 A SG CYS 267 A CYS 267 1_555 M ZN ZN . A ZN 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6N3G 
_atom_sites.fract_transf_matrix[1][1]    0.006586 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006586 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018608 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SAH A 1 501 504 SAH SAH . 
C 3 12P A 1 502 505 12P PE8 . 
D 4 NI A 1 503 1 NI NI . 
E 4 NI A 1 504 2 NI NI . 
F 5 EOH A 1 505 1 EOH EOH . 
G 5 EOH A 1 506 2 EOH EOH . 
H 5 EOH A 1 507 3 EOH EOH . 
I 5 EOH A 1 508 4 EOH EOH . 
J 5 EOH A 1 509 5 EOH EOH . 
K 6 ZN A 1 510 507 ZN ZN . 
L 6 ZN A 1 511 508 ZN ZN . 
M 6 ZN A 1 512 509 ZN ZN . 
N 7 HOH A 1 601 3 HOH HOH . 
N 7 HOH A 2 602 21 HOH HOH . 
N 7 HOH A 3 603 46 HOH HOH . 
N 7 HOH A 4 604 27 HOH HOH . 
N 7 HOH A 5 605 59 HOH HOH . 
N 7 HOH A 6 606 25 HOH HOH . 
N 7 HOH A 7 607 54 HOH HOH . 
N 7 HOH A 8 608 29 HOH HOH . 
N 7 HOH A 9 609 44 HOH HOH . 
N 7 HOH A 10 610 60 HOH HOH . 
N 7 HOH A 11 611 47 HOH HOH . 
N 7 HOH A 12 612 23 HOH HOH . 
N 7 HOH A 13 613 28 HOH HOH . 
N 7 HOH A 14 614 8 HOH HOH . 
N 7 HOH A 15 615 57 HOH HOH . 
N 7 HOH A 16 616 45 HOH HOH . 
N 7 HOH A 17 617 7 HOH HOH . 
N 7 HOH A 18 618 9 HOH HOH . 
N 7 HOH A 19 619 72 HOH HOH . 
N 7 HOH A 20 620 15 HOH HOH . 
N 7 HOH A 21 621 38 HOH HOH . 
N 7 HOH A 22 622 16 HOH HOH . 
N 7 HOH A 23 623 14 HOH HOH . 
N 7 HOH A 24 624 2 HOH HOH . 
N 7 HOH A 25 625 55 HOH HOH . 
N 7 HOH A 26 626 5 HOH HOH . 
N 7 HOH A 27 627 30 HOH HOH . 
N 7 HOH A 28 628 35 HOH HOH . 
N 7 HOH A 29 629 26 HOH HOH . 
N 7 HOH A 30 630 74 HOH HOH . 
N 7 HOH A 31 631 22 HOH HOH . 
N 7 HOH A 32 632 19 HOH HOH . 
N 7 HOH A 33 633 18 HOH HOH . 
N 7 HOH A 34 634 6 HOH HOH . 
N 7 HOH A 35 635 61 HOH HOH . 
N 7 HOH A 36 636 1 HOH HOH . 
N 7 HOH A 37 637 64 HOH HOH . 
N 7 HOH A 38 638 40 HOH HOH . 
N 7 HOH A 39 639 4 HOH HOH . 
N 7 HOH A 40 640 34 HOH HOH . 
N 7 HOH A 41 641 39 HOH HOH . 
N 7 HOH A 42 642 12 HOH HOH . 
N 7 HOH A 43 643 58 HOH HOH . 
N 7 HOH A 44 644 11 HOH HOH . 
N 7 HOH A 45 645 36 HOH HOH . 
N 7 HOH A 46 646 10 HOH HOH . 
N 7 HOH A 47 647 52 HOH HOH . 
N 7 HOH A 48 648 20 HOH HOH . 
N 7 HOH A 49 649 24 HOH HOH . 
N 7 HOH A 50 650 76 HOH HOH . 
N 7 HOH A 51 651 50 HOH HOH . 
N 7 HOH A 52 652 48 HOH HOH . 
N 7 HOH A 53 653 31 HOH HOH . 
N 7 HOH A 54 654 53 HOH HOH . 
N 7 HOH A 55 655 17 HOH HOH . 
N 7 HOH A 56 656 75 HOH HOH . 
N 7 HOH A 57 657 62 HOH HOH . 
N 7 HOH A 58 658 41 HOH HOH . 
N 7 HOH A 59 659 32 HOH HOH . 
N 7 HOH A 60 660 73 HOH HOH . 
N 7 HOH A 61 661 71 HOH HOH . 
N 7 HOH A 62 662 13 HOH HOH . 
N 7 HOH A 63 663 67 HOH HOH . 
N 7 HOH A 64 664 66 HOH HOH . 
N 7 HOH A 65 665 65 HOH HOH . 
N 7 HOH A 66 666 77 HOH HOH . 
N 7 HOH A 67 667 70 HOH HOH . 
N 7 HOH A 68 668 33 HOH HOH . 
N 7 HOH A 69 669 51 HOH HOH . 
N 7 HOH A 70 670 69 HOH HOH . 
N 7 HOH A 71 671 43 HOH HOH . 
N 7 HOH A 72 672 49 HOH HOH . 
N 7 HOH A 73 673 56 HOH HOH . 
N 7 HOH A 74 674 78 HOH HOH . 
N 7 HOH A 75 675 63 HOH HOH . 
N 7 HOH A 76 676 68 HOH HOH . 
N 7 HOH A 77 677 79 HOH HOH . 
N 7 HOH A 78 678 37 HOH HOH . 
N 7 HOH A 79 679 42 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               169.992 
_atom_site.Cartn_y               53.483 
_atom_site.Cartn_z               -1.027 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        76.92 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           503 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#