data_6N3K # _model_server_result.job_id tZDrQ95X7Y7d-o26bvR8rw _model_server_result.datetime_utc '2024-10-27 22:22:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n3k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6N3K # _exptl.entry_id 6N3K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.477 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-{cis-4-[(2,6-difluorophenyl)methoxy]cyclohexyl}-N'-(3-phenylpropyl)urea" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6N3K _cell.length_a 50.073 _cell.length_b 77.276 _cell.length_c 87.103 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N3K _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H28 F2 N2 O2' _chem_comp.formula_weight 402.477 _chem_comp.id K9V _chem_comp.mon_nstd_flag . _chem_comp.name "N-{cis-4-[(2,6-difluorophenyl)methoxy]cyclohexyl}-N'-(3-phenylpropyl)urea" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 C25 K9V doub 173 n y C24 C23 K9V sing 174 n y C25 C26 K9V sing 175 n y C23 C21 K9V doub 176 n y C26 F27 K9V sing 177 n n C26 C20 K9V doub 178 n y C21 C20 K9V sing 179 n y C21 F22 K9V sing 180 n n C20 C19 K9V sing 181 n n C19 O18 K9V sing 182 n n O18 C17 K9V sing 183 n n C28 C17 K9V sing 184 n n C28 C29 K9V sing 185 n n C17 C16 K9V sing 186 n n C16 C15 K9V sing 187 n n C29 C14 K9V sing 188 n n C15 C14 K9V sing 189 n n C14 N13 K9V sing 190 n n N13 C02 K9V sing 191 n n C02 O01 K9V doub 192 n n C02 N03 K9V sing 193 n n C12 C11 K9V doub 194 n y C12 C07 K9V sing 195 n y N03 C04 K9V sing 196 n n C06 C07 K9V sing 197 n n C06 C05 K9V sing 198 n n C11 C10 K9V sing 199 n y C07 C08 K9V doub 200 n y C04 C05 K9V sing 201 n n C10 C09 K9V doub 202 n y C08 C09 K9V sing 203 n y C10 H1 K9V sing 204 n n C15 H2 K9V sing 205 n n C15 H3 K9V sing 206 n n C17 H4 K9V sing 207 n n C24 H5 K9V sing 208 n n C28 H6 K9V sing 209 n n C28 H7 K9V sing 210 n n N03 H8 K9V sing 211 n n C04 H9 K9V sing 212 n n C04 H10 K9V sing 213 n n C05 H11 K9V sing 214 n n C05 H12 K9V sing 215 n n C06 H13 K9V sing 216 n n C06 H14 K9V sing 217 n n C08 H15 K9V sing 218 n n C09 H16 K9V sing 219 n n C11 H17 K9V sing 220 n n C12 H18 K9V sing 221 n n N13 H19 K9V sing 222 n n C14 H20 K9V sing 223 n n C16 H21 K9V sing 224 n n C16 H22 K9V sing 225 n n C19 H23 K9V sing 226 n n C19 H24 K9V sing 227 n n C23 H25 K9V sing 228 n n C25 H26 K9V sing 229 n n C29 H27 K9V sing 230 n n C29 H28 K9V sing 231 n n # _atom_sites.entry_id 6N3K _atom_sites.fract_transf_matrix[1][1] 0.019971 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012941 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011481 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K9V A 1 401 1 K9V LIG . C 3 HOH A 1 501 58 HOH HOH . C 3 HOH A 2 502 103 HOH HOH . C 3 HOH A 3 503 88 HOH HOH . C 3 HOH A 4 504 31 HOH HOH . C 3 HOH A 5 505 86 HOH HOH . C 3 HOH A 6 506 50 HOH HOH . C 3 HOH A 7 507 8 HOH HOH . C 3 HOH A 8 508 11 HOH HOH . C 3 HOH A 9 509 7 HOH HOH . C 3 HOH A 10 510 19 HOH HOH . C 3 HOH A 11 511 143 HOH HOH . C 3 HOH A 12 512 27 HOH HOH . C 3 HOH A 13 513 93 HOH HOH . C 3 HOH A 14 514 5 HOH HOH . C 3 HOH A 15 515 17 HOH HOH . C 3 HOH A 16 516 30 HOH HOH . C 3 HOH A 17 517 55 HOH HOH . C 3 HOH A 18 518 23 HOH HOH . C 3 HOH A 19 519 78 HOH HOH . C 3 HOH A 20 520 15 HOH HOH . C 3 HOH A 21 521 74 HOH HOH . C 3 HOH A 22 522 100 HOH HOH . C 3 HOH A 23 523 69 HOH HOH . C 3 HOH A 24 524 131 HOH HOH . C 3 HOH A 25 525 53 HOH HOH . C 3 HOH A 26 526 81 HOH HOH . C 3 HOH A 27 527 140 HOH HOH . C 3 HOH A 28 528 92 HOH HOH . C 3 HOH A 29 529 4 HOH HOH . C 3 HOH A 30 530 122 HOH HOH . C 3 HOH A 31 531 22 HOH HOH . C 3 HOH A 32 532 44 HOH HOH . C 3 HOH A 33 533 36 HOH HOH . C 3 HOH A 34 534 124 HOH HOH . C 3 HOH A 35 535 121 HOH HOH . C 3 HOH A 36 536 54 HOH HOH . C 3 HOH A 37 537 95 HOH HOH . C 3 HOH A 38 538 91 HOH HOH . C 3 HOH A 39 539 66 HOH HOH . C 3 HOH A 40 540 42 HOH HOH . C 3 HOH A 41 541 14 HOH HOH . C 3 HOH A 42 542 16 HOH HOH . C 3 HOH A 43 543 10 HOH HOH . C 3 HOH A 44 544 43 HOH HOH . C 3 HOH A 45 545 71 HOH HOH . C 3 HOH A 46 546 25 HOH HOH . C 3 HOH A 47 547 82 HOH HOH . C 3 HOH A 48 548 41 HOH HOH . C 3 HOH A 49 549 63 HOH HOH . C 3 HOH A 50 550 39 HOH HOH . C 3 HOH A 51 551 21 HOH HOH . C 3 HOH A 52 552 60 HOH HOH . C 3 HOH A 53 553 89 HOH HOH . C 3 HOH A 54 554 34 HOH HOH . C 3 HOH A 55 555 32 HOH HOH . C 3 HOH A 56 556 76 HOH HOH . C 3 HOH A 57 557 114 HOH HOH . C 3 HOH A 58 558 62 HOH HOH . C 3 HOH A 59 559 46 HOH HOH . C 3 HOH A 60 560 6 HOH HOH . C 3 HOH A 61 561 147 HOH HOH . C 3 HOH A 62 562 12 HOH HOH . C 3 HOH A 63 563 1 HOH HOH . C 3 HOH A 64 564 132 HOH HOH . C 3 HOH A 65 565 73 HOH HOH . C 3 HOH A 66 566 49 HOH HOH . C 3 HOH A 67 567 84 HOH HOH . C 3 HOH A 68 568 9 HOH HOH . C 3 HOH A 69 569 29 HOH HOH . C 3 HOH A 70 570 105 HOH HOH . C 3 HOH A 71 571 2 HOH HOH . C 3 HOH A 72 572 117 HOH HOH . C 3 HOH A 73 573 153 HOH HOH . C 3 HOH A 74 574 64 HOH HOH . C 3 HOH A 75 575 40 HOH HOH . C 3 HOH A 76 576 87 HOH HOH . C 3 HOH A 77 577 110 HOH HOH . C 3 HOH A 78 578 96 HOH HOH . C 3 HOH A 79 579 142 HOH HOH . C 3 HOH A 80 580 57 HOH HOH . C 3 HOH A 81 581 51 HOH HOH . C 3 HOH A 82 582 115 HOH HOH . C 3 HOH A 83 583 77 HOH HOH . C 3 HOH A 84 584 70 HOH HOH . C 3 HOH A 85 585 94 HOH HOH . C 3 HOH A 86 586 148 HOH HOH . C 3 HOH A 87 587 52 HOH HOH . C 3 HOH A 88 588 28 HOH HOH . C 3 HOH A 89 589 75 HOH HOH . C 3 HOH A 90 590 99 HOH HOH . C 3 HOH A 91 591 13 HOH HOH . C 3 HOH A 92 592 113 HOH HOH . C 3 HOH A 93 593 67 HOH HOH . C 3 HOH A 94 594 20 HOH HOH . C 3 HOH A 95 595 38 HOH HOH . C 3 HOH A 96 596 83 HOH HOH . C 3 HOH A 97 597 37 HOH HOH . C 3 HOH A 98 598 80 HOH HOH . C 3 HOH A 99 599 45 HOH HOH . C 3 HOH A 100 600 26 HOH HOH . C 3 HOH A 101 601 33 HOH HOH . C 3 HOH A 102 602 111 HOH HOH . C 3 HOH A 103 603 138 HOH HOH . C 3 HOH A 104 604 65 HOH HOH . C 3 HOH A 105 605 3 HOH HOH . C 3 HOH A 106 606 145 HOH HOH . C 3 HOH A 107 607 85 HOH HOH . C 3 HOH A 108 608 151 HOH HOH . C 3 HOH A 109 609 102 HOH HOH . C 3 HOH A 110 610 101 HOH HOH . C 3 HOH A 111 611 18 HOH HOH . C 3 HOH A 112 612 61 HOH HOH . C 3 HOH A 113 613 116 HOH HOH . C 3 HOH A 114 614 47 HOH HOH . C 3 HOH A 115 615 146 HOH HOH . C 3 HOH A 116 616 126 HOH HOH . C 3 HOH A 117 617 48 HOH HOH . C 3 HOH A 118 618 72 HOH HOH . C 3 HOH A 119 619 130 HOH HOH . C 3 HOH A 120 620 139 HOH HOH . C 3 HOH A 121 621 152 HOH HOH . C 3 HOH A 122 622 134 HOH HOH . C 3 HOH A 123 623 90 HOH HOH . C 3 HOH A 124 624 127 HOH HOH . C 3 HOH A 125 625 120 HOH HOH . C 3 HOH A 126 626 119 HOH HOH . C 3 HOH A 127 627 79 HOH HOH . C 3 HOH A 128 628 59 HOH HOH . C 3 HOH A 129 629 106 HOH HOH . C 3 HOH A 130 630 118 HOH HOH . C 3 HOH A 131 631 112 HOH HOH . C 3 HOH A 132 632 104 HOH HOH . C 3 HOH A 133 633 98 HOH HOH . C 3 HOH A 134 634 24 HOH HOH . C 3 HOH A 135 635 109 HOH HOH . C 3 HOH A 136 636 35 HOH HOH . C 3 HOH A 137 637 125 HOH HOH . C 3 HOH A 138 638 144 HOH HOH . C 3 HOH A 139 639 135 HOH HOH . C 3 HOH A 140 640 108 HOH HOH . C 3 HOH A 141 641 137 HOH HOH . C 3 HOH A 142 642 107 HOH HOH . C 3 HOH A 143 643 150 HOH HOH . C 3 HOH A 144 644 128 HOH HOH . C 3 HOH A 145 645 97 HOH HOH . C 3 HOH A 146 646 136 HOH HOH . C 3 HOH A 147 647 129 HOH HOH . C 3 HOH A 148 648 133 HOH HOH . C 3 HOH A 149 649 141 HOH HOH . C 3 HOH A 150 650 149 HOH HOH . C 3 HOH A 151 651 56 HOH HOH . C 3 HOH A 152 652 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 K9V . . . B 2 13.609 81.149 108.671 1 35.99 ? C10 K9V 401 A 1 HETATM 2 C C15 K9V . . . B 2 7.493 89.467 103.71 1 29.11 ? C15 K9V 401 A 1 HETATM 3 C C17 K9V . . . B 2 5.283 89.715 102.411 1 39.4 ? C17 K9V 401 A 1 HETATM 4 C C20 K9V . . . B 2 4.408 89.671 99.042 1 43.78 ? C20 K9V 401 A 1 HETATM 5 C C21 K9V . . . B 2 5.692 89.669 98.498 1 43.33 ? C21 K9V 401 A 1 HETATM 6 C C24 K9V . . . B 2 4.91 88.39 96.62 1 48.52 ? C24 K9V 401 A 1 HETATM 7 C C26 K9V . . . B 2 3.374 89.027 98.368 1 47.4 ? C26 K9V 401 A 1 HETATM 8 C C28 K9V . . . B 2 5.415 88.192 102.345 1 35.99 ? C28 K9V 401 A 1 HETATM 9 O O01 K9V . . . B 2 6.7 86.597 106.834 1 32.26 ? O01 K9V 401 A 1 HETATM 10 C C02 K9V . . . B 2 7.746 86.769 106.305 1 34.17 ? C02 K9V 401 A 1 HETATM 11 N N03 K9V . . . B 2 8.932 86.108 106.839 1 34.36 ? N03 K9V 401 A 1 HETATM 12 C C04 K9V . . . B 2 8.765 85.256 108.007 1 37.45 ? C04 K9V 401 A 1 HETATM 13 C C05 K9V . . . B 2 10.086 84.574 108.352 1 35.68 ? C05 K9V 401 A 1 HETATM 14 C C06 K9V . . . B 2 10.627 83.799 107.159 1 33.96 ? C06 K9V 401 A 1 HETATM 15 C C07 K9V . . . B 2 11.692 82.862 107.672 1 35.9 ? C07 K9V 401 A 1 HETATM 16 C C08 K9V . . . B 2 12.089 82.979 108.997 1 35.38 ? C08 K9V 401 A 1 HETATM 17 C C09 K9V . . . B 2 13.052 82.116 109.499 1 33.48 ? C09 K9V 401 A 1 HETATM 18 C C11 K9V . . . B 2 13.208 81.037 107.342 1 38.75 ? C11 K9V 401 A 1 HETATM 19 C C12 K9V . . . B 2 12.24 81.894 106.836 1 41.84 ? C12 K9V 401 A 1 HETATM 20 N N13 K9V . . . B 2 7.907 87.633 105.131 1 35.13 ? N13 K9V 401 A 1 HETATM 21 C C14 K9V . . . B 2 6.823 88.368 104.507 1 29.67 ? C14 K9V 401 A 1 HETATM 22 C C16 K9V . . . B 2 6.436 90.406 103.136 1 37.55 ? C16 K9V 401 A 1 HETATM 23 O O18 K9V . . . B 2 5.342 90.221 101.1 1 46.25 ? O18 K9V 401 A 1 HETATM 24 C C19 K9V . . . B 2 4.146 90.365 100.385 1 37.96 ? C19 K9V 401 A 1 HETATM 25 F F22 K9V . . . B 2 6.712 90.29 99.157 1 48.36 ? F22 K9V 401 A 1 HETATM 26 C C23 K9V . . . B 2 5.945 89.034 97.288 1 42.96 ? C23 K9V 401 A 1 HETATM 27 C C25 K9V . . . B 2 3.626 88.385 97.159 1 47.77 ? C25 K9V 401 A 1 HETATM 28 F F27 K9V . . . B 2 2.11 89.02 98.894 1 54 ? F27 K9V 401 A 1 HETATM 29 C C29 K9V . . . B 2 5.964 87.496 103.597 1 36.13 ? C29 K9V 401 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #