data_6N3L # _model_server_result.job_id jcXRf4CN3zmMZ7HeUsnzhg _model_server_result.datetime_utc '2024-11-24 06:36:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n3l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2501}' # _entry.id 6N3L # _exptl.entry_id 6N3L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 468.431 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{6-[(1-methyl-2-{[4-(trifluoromethyl)phenyl]amino}-1H-benzimidazol-5-yl)oxy]pyrimidin-4-yl}cyclopropanecarboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6N3L _cell.length_a 83.886 _cell.length_b 122.233 _cell.length_c 120.674 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N3L _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C23 H19 F3 N6 O2' _chem_comp.formula_weight 468.431 _chem_comp.id KAV _chem_comp.mon_nstd_flag . _chem_comp.name N-{6-[(1-methyl-2-{[4-(trifluoromethyl)phenyl]amino}-1H-benzimidazol-5-yl)oxy]pyrimidin-4-yl}cyclopropanecarboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F12 C11 KAV sing 173 n n F13 C11 KAV sing 174 n n C11 C8 KAV sing 175 n n C11 F14 KAV sing 176 n n C9 C10 KAV doub 177 n y C9 C8 KAV sing 178 n y C10 C5 KAV sing 179 n y C8 C7 KAV doub 180 n y C7 C6 KAV sing 181 n y C5 C6 KAV doub 182 n y C5 N4 KAV sing 183 n n N4 C3 KAV sing 184 n n C1 N2 KAV sing 185 n n C3 N2 KAV sing 186 n y C3 N15 KAV doub 187 n y N2 C34 KAV sing 188 n y N15 C16 KAV sing 189 n y C34 C16 KAV doub 190 n y C34 C33 KAV sing 191 n y C16 C17 KAV sing 192 n y C33 C32 KAV doub 193 n y C17 C18 KAV doub 194 n y C32 C18 KAV sing 195 n y C18 O19 KAV sing 196 n n O19 C20 KAV sing 197 n n N31 C20 KAV doub 198 n y N31 C30 KAV sing 199 n y C20 C21 KAV sing 200 n y C30 N29 KAV doub 201 n y C21 C22 KAV doub 202 n y N29 C22 KAV sing 203 n y C22 N23 KAV sing 204 n n N23 C24 KAV sing 205 n n O25 C24 KAV doub 206 n n C24 C26 KAV sing 207 n n C26 C27 KAV sing 208 n n C26 C28 KAV sing 209 n n C27 C28 KAV sing 210 n n C6 H1 KAV sing 211 n n C7 H2 KAV sing 212 n n C10 H3 KAV sing 213 n n C17 H4 KAV sing 214 n n C21 H5 KAV sing 215 n n C26 H6 KAV sing 216 n n C28 H7 KAV sing 217 n n C28 H8 KAV sing 218 n n C1 H9 KAV sing 219 n n C1 H10 KAV sing 220 n n C1 H11 KAV sing 221 n n N4 H12 KAV sing 222 n n C9 H13 KAV sing 223 n n N23 H14 KAV sing 224 n n C27 H15 KAV sing 225 n n C27 H16 KAV sing 226 n n C30 H17 KAV sing 227 n n C32 H18 KAV sing 228 n n C33 H19 KAV sing 229 n n # _atom_sites.entry_id 6N3L _atom_sites.fract_transf_matrix[1][1] 0.011921 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008181 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008287 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 KAV A 1 2501 2501 KAV LIG . D 2 KAV B 1 2501 2501 KAV LIG . E 3 HOH A 1 2601 33 HOH HOH . E 3 HOH A 2 2602 10 HOH HOH . E 3 HOH A 3 2603 20 HOH HOH . E 3 HOH A 4 2604 17 HOH HOH . E 3 HOH A 5 2605 35 HOH HOH . E 3 HOH A 6 2606 22 HOH HOH . E 3 HOH A 7 2607 2 HOH HOH . E 3 HOH A 8 2608 24 HOH HOH . E 3 HOH A 9 2609 39 HOH HOH . E 3 HOH A 10 2610 1 HOH HOH . E 3 HOH A 11 2611 26 HOH HOH . E 3 HOH A 12 2612 13 HOH HOH . E 3 HOH A 13 2613 14 HOH HOH . E 3 HOH A 14 2614 7 HOH HOH . E 3 HOH A 15 2615 32 HOH HOH . E 3 HOH A 16 2616 11 HOH HOH . E 3 HOH A 17 2617 37 HOH HOH . E 3 HOH A 18 2618 4 HOH HOH . E 3 HOH A 19 2619 41 HOH HOH . E 3 HOH A 20 2620 36 HOH HOH . E 3 HOH A 21 2621 46 HOH HOH . E 3 HOH A 22 2622 27 HOH HOH . E 3 HOH A 23 2623 29 HOH HOH . E 3 HOH A 24 2624 9 HOH HOH . E 3 HOH A 25 2625 15 HOH HOH . E 3 HOH A 26 2626 40 HOH HOH . E 3 HOH A 27 2627 38 HOH HOH . F 3 HOH B 1 2601 6 HOH HOH . F 3 HOH B 2 2602 18 HOH HOH . F 3 HOH B 3 2603 31 HOH HOH . F 3 HOH B 4 2604 44 HOH HOH . F 3 HOH B 5 2605 25 HOH HOH . F 3 HOH B 6 2606 19 HOH HOH . F 3 HOH B 7 2607 3 HOH HOH . F 3 HOH B 8 2608 21 HOH HOH . F 3 HOH B 9 2609 48 HOH HOH . F 3 HOH B 10 2610 42 HOH HOH . F 3 HOH B 11 2611 47 HOH HOH . F 3 HOH B 12 2612 34 HOH HOH . F 3 HOH B 13 2613 45 HOH HOH . F 3 HOH B 14 2614 28 HOH HOH . F 3 HOH B 15 2615 8 HOH HOH . F 3 HOH B 16 2616 16 HOH HOH . F 3 HOH B 17 2617 23 HOH HOH . F 3 HOH B 18 2618 5 HOH HOH . F 3 HOH B 19 2619 12 HOH HOH . F 3 HOH B 20 2620 43 HOH HOH . F 3 HOH B 21 2621 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 KAV . . . C 2 15.597 135.901 -2.347 1 51.62 ? C5 KAV 2501 A 1 HETATM 2 C C6 KAV . . . C 2 16.707 135.231 -1.817 1 51.69 ? C6 KAV 2501 A 1 HETATM 3 C C7 KAV . . . C 2 17.971 135.275 -2.367 1 46.05 ? C7 KAV 2501 A 1 HETATM 4 C C8 KAV . . . C 2 18.099 136.037 -3.505 1 51.04 ? C8 KAV 2501 A 1 HETATM 5 C C10 KAV . . . C 2 15.78 136.678 -3.514 1 49.36 ? C10 KAV 2501 A 1 HETATM 6 C C17 KAV . . . C 2 14.529 135.763 3.14 1 45.37 ? C17 KAV 2501 A 1 HETATM 7 C C20 KAV . . . C 2 14.91 134.794 6.153 1 43.72 ? C20 KAV 2501 A 1 HETATM 8 C C21 KAV . . . C 2 15.085 135.109 7.484 1 41.8 ? C21 KAV 2501 A 1 HETATM 9 C C22 KAV . . . C 2 16.015 134.319 8.183 1 45 ? C22 KAV 2501 A 1 HETATM 10 C C24 KAV . . . C 2 16.076 135.584 10.342 1 44.84 ? C24 KAV 2501 A 1 HETATM 11 C C26 KAV . . . C 2 16.528 135.602 11.776 1 44.78 ? C26 KAV 2501 A 1 HETATM 12 C C28 KAV . . . C 2 15.992 136.708 12.674 1 42.37 ? C28 KAV 2501 A 1 HETATM 13 C C1 KAV . . . C 2 11.687 134.51 -0.636 1 48.08 ? C1 KAV 2501 A 1 HETATM 14 N N2 KAV . . . C 2 12.834 135.05 0.106 1 46.24 ? N2 KAV 2501 A 1 HETATM 15 C C3 KAV . . . C 2 13.988 135.608 -0.367 1 44.83 ? C3 KAV 2501 A 1 HETATM 16 N N4 KAV . . . C 2 14.3 135.79 -1.734 1 53.3 ? N4 KAV 2501 A 1 HETATM 17 C C9 KAV . . . C 2 17.036 136.739 -4.093 1 47.12 ? C9 KAV 2501 A 1 HETATM 18 C C11 KAV . . . C 2 19.44 136.115 -4.135 1 47.05 ? C11 KAV 2501 A 1 HETATM 19 F F12 KAV . . . C 2 19.617 135.187 -5.105 1 45.38 ? F12 KAV 2501 A 1 HETATM 20 F F13 KAV . . . C 2 19.415 137.294 -4.782 1 50.06 ? F13 KAV 2501 A 1 HETATM 21 F F14 KAV . . . C 2 20.492 135.928 -3.26 1 50.2 ? F14 KAV 2501 A 1 HETATM 22 N N15 KAV . . . C 2 14.744 135.937 0.64 1 39.23 ? N15 KAV 2501 A 1 HETATM 23 C C16 KAV . . . C 2 14.148 135.633 1.791 1 43.78 ? C16 KAV 2501 A 1 HETATM 24 C C18 KAV . . . C 2 13.661 135.315 4.142 1 47.63 ? C18 KAV 2501 A 1 HETATM 25 O O19 KAV . . . C 2 13.992 135.48 5.48 1 48.52 ? O19 KAV 2501 A 1 HETATM 26 N N23 KAV . . . C 2 16.316 134.514 9.56 1 47.29 ? N23 KAV 2501 A 1 HETATM 27 O O25 KAV . . . C 2 15.485 136.54 9.92 1 48.89 ? O25 KAV 2501 A 1 HETATM 28 C C27 KAV . . . C 2 17.432 136.772 12.153 1 42.72 ? C27 KAV 2501 A 1 HETATM 29 N N29 KAV . . . C 2 16.724 133.356 7.518 1 41.53 ? N29 KAV 2501 A 1 HETATM 30 C C30 KAV . . . C 2 16.543 133.111 6.234 1 43.89 ? C30 KAV 2501 A 1 HETATM 31 N N31 KAV . . . C 2 15.634 133.829 5.559 1 45.28 ? N31 KAV 2501 A 1 HETATM 32 C C32 KAV . . . C 2 12.405 134.748 3.804 1 46.37 ? C32 KAV 2501 A 1 HETATM 33 C C33 KAV . . . C 2 12.012 134.62 2.484 1 46.82 ? C33 KAV 2501 A 1 HETATM 34 C C34 KAV . . . C 2 12.896 135.065 1.479 1 47.89 ? C34 KAV 2501 A 1 # _model_server_stats.io_time_ms 80 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #