data_6N3L
#
_model_server_result.job_id            wMoiQX04TAScFzoUv4AwPA 
_model_server_result.datetime_utc      '2024-11-28 00:04:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6n3l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2501}' 
#
_entry.id    6N3L 
#
_exptl.entry_id    6N3L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              468.431 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-{6-[(1-methyl-2-{[4-(trifluoromethyl)phenyl]amino}-1H-benzimidazol-5-yl)oxy]pyrimidin-4-yl}cyclopropanecarboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6N3L 
_cell.length_a            83.886 
_cell.length_b            122.233 
_cell.length_c            120.674 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6N3L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C23 H19 F3 N6 O2' 
_chem_comp.formula_weight    468.431 
_chem_comp.id                KAV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-{6-[(1-methyl-2-{[4-(trifluoromethyl)phenyl]amino}-1H-benzimidazol-5-yl)oxy]pyrimidin-4-yl}cyclopropanecarboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F12 C11 KAV sing 173 n n 
F13 C11 KAV sing 174 n n 
C11 C8 KAV sing 175 n n 
C11 F14 KAV sing 176 n n 
C9 C10 KAV doub 177 n y 
C9 C8 KAV sing 178 n y 
C10 C5 KAV sing 179 n y 
C8 C7 KAV doub 180 n y 
C7 C6 KAV sing 181 n y 
C5 C6 KAV doub 182 n y 
C5 N4 KAV sing 183 n n 
N4 C3 KAV sing 184 n n 
C1 N2 KAV sing 185 n n 
C3 N2 KAV sing 186 n y 
C3 N15 KAV doub 187 n y 
N2 C34 KAV sing 188 n y 
N15 C16 KAV sing 189 n y 
C34 C16 KAV doub 190 n y 
C34 C33 KAV sing 191 n y 
C16 C17 KAV sing 192 n y 
C33 C32 KAV doub 193 n y 
C17 C18 KAV doub 194 n y 
C32 C18 KAV sing 195 n y 
C18 O19 KAV sing 196 n n 
O19 C20 KAV sing 197 n n 
N31 C20 KAV doub 198 n y 
N31 C30 KAV sing 199 n y 
C20 C21 KAV sing 200 n y 
C30 N29 KAV doub 201 n y 
C21 C22 KAV doub 202 n y 
N29 C22 KAV sing 203 n y 
C22 N23 KAV sing 204 n n 
N23 C24 KAV sing 205 n n 
O25 C24 KAV doub 206 n n 
C24 C26 KAV sing 207 n n 
C26 C27 KAV sing 208 n n 
C26 C28 KAV sing 209 n n 
C27 C28 KAV sing 210 n n 
C6 H1 KAV sing 211 n n 
C7 H2 KAV sing 212 n n 
C10 H3 KAV sing 213 n n 
C17 H4 KAV sing 214 n n 
C21 H5 KAV sing 215 n n 
C26 H6 KAV sing 216 n n 
C28 H7 KAV sing 217 n n 
C28 H8 KAV sing 218 n n 
C1 H9 KAV sing 219 n n 
C1 H10 KAV sing 220 n n 
C1 H11 KAV sing 221 n n 
N4 H12 KAV sing 222 n n 
C9 H13 KAV sing 223 n n 
N23 H14 KAV sing 224 n n 
C27 H15 KAV sing 225 n n 
C27 H16 KAV sing 226 n n 
C30 H17 KAV sing 227 n n 
C32 H18 KAV sing 228 n n 
C33 H19 KAV sing 229 n n 
#
_atom_sites.entry_id                     6N3L 
_atom_sites.fract_transf_matrix[1][1]    0.011921 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008181 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008287 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 KAV A 1 2501 2501 KAV LIG . 
D 2 KAV B 1 2501 2501 KAV LIG . 
E 3 HOH A 1 2601 33 HOH HOH . 
E 3 HOH A 2 2602 10 HOH HOH . 
E 3 HOH A 3 2603 20 HOH HOH . 
E 3 HOH A 4 2604 17 HOH HOH . 
E 3 HOH A 5 2605 35 HOH HOH . 
E 3 HOH A 6 2606 22 HOH HOH . 
E 3 HOH A 7 2607 2 HOH HOH . 
E 3 HOH A 8 2608 24 HOH HOH . 
E 3 HOH A 9 2609 39 HOH HOH . 
E 3 HOH A 10 2610 1 HOH HOH . 
E 3 HOH A 11 2611 26 HOH HOH . 
E 3 HOH A 12 2612 13 HOH HOH . 
E 3 HOH A 13 2613 14 HOH HOH . 
E 3 HOH A 14 2614 7 HOH HOH . 
E 3 HOH A 15 2615 32 HOH HOH . 
E 3 HOH A 16 2616 11 HOH HOH . 
E 3 HOH A 17 2617 37 HOH HOH . 
E 3 HOH A 18 2618 4 HOH HOH . 
E 3 HOH A 19 2619 41 HOH HOH . 
E 3 HOH A 20 2620 36 HOH HOH . 
E 3 HOH A 21 2621 46 HOH HOH . 
E 3 HOH A 22 2622 27 HOH HOH . 
E 3 HOH A 23 2623 29 HOH HOH . 
E 3 HOH A 24 2624 9 HOH HOH . 
E 3 HOH A 25 2625 15 HOH HOH . 
E 3 HOH A 26 2626 40 HOH HOH . 
E 3 HOH A 27 2627 38 HOH HOH . 
F 3 HOH B 1 2601 6 HOH HOH . 
F 3 HOH B 2 2602 18 HOH HOH . 
F 3 HOH B 3 2603 31 HOH HOH . 
F 3 HOH B 4 2604 44 HOH HOH . 
F 3 HOH B 5 2605 25 HOH HOH . 
F 3 HOH B 6 2606 19 HOH HOH . 
F 3 HOH B 7 2607 3 HOH HOH . 
F 3 HOH B 8 2608 21 HOH HOH . 
F 3 HOH B 9 2609 48 HOH HOH . 
F 3 HOH B 10 2610 42 HOH HOH . 
F 3 HOH B 11 2611 47 HOH HOH . 
F 3 HOH B 12 2612 34 HOH HOH . 
F 3 HOH B 13 2613 45 HOH HOH . 
F 3 HOH B 14 2614 28 HOH HOH . 
F 3 HOH B 15 2615 8 HOH HOH . 
F 3 HOH B 16 2616 16 HOH HOH . 
F 3 HOH B 17 2617 23 HOH HOH . 
F 3 HOH B 18 2618 5 HOH HOH . 
F 3 HOH B 19 2619 12 HOH HOH . 
F 3 HOH B 20 2620 43 HOH HOH . 
F 3 HOH B 21 2621 30 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C5 KAV . . . D 2 28.728 149.659 -27.736 1 51.17 ? C5 KAV 2501 B 1 
HETATM 2 C C6 KAV . . . D 2 29.533 148.625 -28.241 1 48.47 ? C6 KAV 2501 B 1 
HETATM 3 C C7 KAV . . . D 2 29.513 147.372 -27.694 1 47.5 ? C7 KAV 2501 B 1 
HETATM 4 C C8 KAV . . . D 2 28.653 147.144 -26.641 1 50.51 ? C8 KAV 2501 B 1 
HETATM 5 C C10 KAV . . . D 2 27.886 149.408 -26.647 1 50.47 ? C10 KAV 2501 B 1 
HETATM 6 C C17 KAV . . . D 2 28.82 150.793 -33.159 1 45.28 ? C17 KAV 2501 B 1 
HETATM 7 C C20 KAV . . . D 2 29.804 150.526 -36.095 1 39.36 ? C20 KAV 2501 B 1 
HETATM 8 C C21 KAV . . . D 2 29.538 150.274 -37.444 1 39.82 ? C21 KAV 2501 B 1 
HETATM 9 C C22 KAV . . . D 2 30.37 149.372 -38.101 1 40.28 ? C22 KAV 2501 B 1 
HETATM 10 C C24 KAV . . . D 2 29.12 149.244 -40.237 1 48.28 ? C24 KAV 2501 B 1 
HETATM 11 C C26 KAV . . . D 2 29.073 148.724 -41.674 1 45.49 ? C26 KAV 2501 B 1 
HETATM 12 C C28 KAV . . . D 2 28.386 149.549 -42.758 1 44.81 ? C28 KAV 2501 B 1 
HETATM 13 C C1 KAV . . . D 2 29.573 153.869 -29.399 1 45.04 ? C1 KAV 2501 B 1 
HETATM 14 N N2 KAV . . . D 2 29.249 152.607 -30.122 1 49.08 ? N2 KAV 2501 B 1 
HETATM 15 C C3 KAV . . . D 2 28.906 151.331 -29.643 1 45.19 ? C3 KAV 2501 B 1 
HETATM 16 N N4 KAV . . . D 2 28.774 150.973 -28.292 1 50.5 ? N4 KAV 2501 B 1 
HETATM 17 C C9 KAV . . . D 2 27.85 148.147 -26.102 1 50.17 ? C9 KAV 2501 B 1 
HETATM 18 C C11 KAV . . . D 2 28.612 145.789 -25.988 1 47.87 ? C11 KAV 2501 B 1 
HETATM 19 F F12 KAV . . . D 2 29.881 145.45 -25.592 1 47.8 ? F12 KAV 2501 B 1 
HETATM 20 F F13 KAV . . . D 2 27.773 145.993 -24.934 1 41.1 ? F13 KAV 2501 B 1 
HETATM 21 F F14 KAV . . . D 2 28.148 144.667 -26.651 1 49.75 ? F14 KAV 2501 B 1 
HETATM 22 N N15 KAV . . . D 2 28.687 150.514 -30.634 1 40.3 ? N15 KAV 2501 B 1 
HETATM 23 C C16 KAV . . . D 2 28.895 151.177 -31.8 1 44.57 ? C16 KAV 2501 B 1 
HETATM 24 C C18 KAV . . . D 2 29.107 151.726 -34.163 1 45.22 ? C18 KAV 2501 B 1 
HETATM 25 O O19 KAV . . . D 2 29.013 151.419 -35.492 1 42.27 ? O19 KAV 2501 B 1 
HETATM 26 N N23 KAV . . . D 2 30.22 149.008 -39.443 1 44.76 ? N23 KAV 2501 B 1 
HETATM 27 O O25 KAV . . . D 2 28.162 149.863 -39.794 1 54.74 ? O25 KAV 2501 B 1 
HETATM 28 C C27 KAV . . . D 2 27.709 148.281 -42.238 1 42.99 ? C27 KAV 2501 B 1 
HETATM 29 N N29 KAV . . . D 2 31.34 148.788 -37.379 1 40.83 ? N29 KAV 2501 B 1 
HETATM 30 C C30 KAV . . . D 2 31.558 149.054 -36.076 1 38 ? C30 KAV 2501 B 1 
HETATM 31 N N31 KAV . . . D 2 30.804 149.924 -35.438 1 36.09 ? N31 KAV 2501 B 1 
HETATM 32 C C32 KAV . . . D 2 29.443 153.039 -33.806 1 46.48 ? C32 KAV 2501 B 1 
HETATM 33 C C33 KAV . . . D 2 29.514 153.435 -32.475 1 45.98 ? C33 KAV 2501 B 1 
HETATM 34 C C34 KAV . . . D 2 29.248 152.511 -31.486 1 44.85 ? C34 KAV 2501 B 1 
#
_model_server_stats.io_time_ms              133 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           34 
#