data_6N3W # _model_server_result.job_id D9hkYkiGS80LrIsu1L0fWw _model_server_result.datetime_utc '2025-01-25 11:37:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n3w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6N3W # _exptl.entry_id 6N3W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.415 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-[(2-phenylethyl)carbamoyl]guanosine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.74 _cell.angle_gamma 90 _cell.entry_id 6N3W _cell.length_a 77.972 _cell.length_b 46.21 _cell.length_c 63.844 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N3W _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H22 N6 O6' _chem_comp.formula_weight 430.415 _chem_comp.id KBJ _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-[(2-phenylethyl)carbamoyl]guanosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C6 KBJ doub 173 n n C6 N1 KBJ sing 174 n n C6 C5 KBJ sing 175 n n N1 C2 KBJ sing 176 n n N2 C2 KBJ sing 177 n n C2 N3 KBJ doub 178 n n C5 N7 KBJ sing 179 n y C5 C4 KBJ doub 180 n y N7 C8 KBJ doub 181 n y N3 C4 KBJ sing 182 n n C4 N9 KBJ sing 183 n y C8 N9 KBJ sing 184 n y N9 C1' KBJ sing 185 n n C1' C2' KBJ sing 186 n n C1' O4' KBJ sing 187 n n O2' C2' KBJ sing 188 n n C2' C3' KBJ sing 189 n n O4' C4' KBJ sing 190 n n C12 C11 KBJ doub 191 n y C12 C13 KBJ sing 192 n y C3' C4' KBJ sing 193 n n C3' O3' KBJ sing 194 n n C11 C10 KBJ sing 195 n y C4' C5' KBJ sing 196 n n C13 C14 KBJ doub 197 n y C5' O5' KBJ sing 198 n n C10 C3 KBJ doub 199 n y C14 C3 KBJ sing 200 n y O5' C1 KBJ sing 201 n n C3 C9 KBJ sing 202 n n O2 C1 KBJ doub 203 n n C1 N4 KBJ sing 204 n n C9 C7 KBJ sing 205 n n N4 C7 KBJ sing 206 n n C8 H1 KBJ sing 207 n n C10 H2 KBJ sing 208 n n C11 H3 KBJ sing 209 n n C12 H4 KBJ sing 210 n n N2 H5 KBJ sing 211 n n N2 H6 KBJ sing 212 n n C1' H8 KBJ sing 213 n n C2' H9 KBJ sing 214 n n O2' H10 KBJ sing 215 n n C3' H11 KBJ sing 216 n n O3' H12 KBJ sing 217 n n C4' H13 KBJ sing 218 n n C5' H14 KBJ sing 219 n n C5' H15 KBJ sing 220 n n N4 H16 KBJ sing 221 n n C7 H17 KBJ sing 222 n n C7 H18 KBJ sing 223 n n C9 H19 KBJ sing 224 n n C9 H20 KBJ sing 225 n n C13 H21 KBJ sing 226 n n C14 H22 KBJ sing 227 n n N1 H23 KBJ sing 228 n n # _atom_sites.entry_id 6N3W _atom_sites.fract_transf_matrix[1][1] 0.012825 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001064 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02164 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015717 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 KBJ A 1 201 1 KBJ 833 . D 3 HOH A 1 301 137 HOH HOH . D 3 HOH A 2 302 50 HOH HOH . D 3 HOH A 3 303 87 HOH HOH . D 3 HOH A 4 304 111 HOH HOH . D 3 HOH A 5 305 172 HOH HOH . D 3 HOH A 6 306 185 HOH HOH . D 3 HOH A 7 307 35 HOH HOH . D 3 HOH A 8 308 107 HOH HOH . D 3 HOH A 9 309 109 HOH HOH . D 3 HOH A 10 310 77 HOH HOH . D 3 HOH A 11 311 91 HOH HOH . D 3 HOH A 12 312 9 HOH HOH . D 3 HOH A 13 313 40 HOH HOH . D 3 HOH A 14 314 112 HOH HOH . D 3 HOH A 15 315 2 HOH HOH . D 3 HOH A 16 316 5 HOH HOH . D 3 HOH A 17 317 11 HOH HOH . D 3 HOH A 18 318 23 HOH HOH . D 3 HOH A 19 319 136 HOH HOH . D 3 HOH A 20 320 18 HOH HOH . D 3 HOH A 21 321 66 HOH HOH . D 3 HOH A 22 322 170 HOH HOH . D 3 HOH A 23 323 86 HOH HOH . D 3 HOH A 24 324 140 HOH HOH . D 3 HOH A 25 325 8 HOH HOH . D 3 HOH A 26 326 83 HOH HOH . D 3 HOH A 27 327 97 HOH HOH . D 3 HOH A 28 328 3 HOH HOH . D 3 HOH A 29 329 53 HOH HOH . D 3 HOH A 30 330 186 HOH HOH . D 3 HOH A 31 331 51 HOH HOH . D 3 HOH A 32 332 223 HOH HOH . D 3 HOH A 33 333 65 HOH HOH . D 3 HOH A 34 334 12 HOH HOH . D 3 HOH A 35 335 60 HOH HOH . D 3 HOH A 36 336 116 HOH HOH . D 3 HOH A 37 337 16 HOH HOH . D 3 HOH A 38 338 113 HOH HOH . D 3 HOH A 39 339 114 HOH HOH . D 3 HOH A 40 340 125 HOH HOH . D 3 HOH A 41 341 6 HOH HOH . D 3 HOH A 42 342 187 HOH HOH . D 3 HOH A 43 343 166 HOH HOH . D 3 HOH A 44 344 62 HOH HOH . D 3 HOH A 45 345 31 HOH HOH . D 3 HOH A 46 346 27 HOH HOH . D 3 HOH A 47 347 72 HOH HOH . D 3 HOH A 48 348 71 HOH HOH . D 3 HOH A 49 349 123 HOH HOH . D 3 HOH A 50 350 181 HOH HOH . D 3 HOH A 51 351 14 HOH HOH . D 3 HOH A 52 352 184 HOH HOH . D 3 HOH A 53 353 42 HOH HOH . D 3 HOH A 54 354 52 HOH HOH . D 3 HOH A 55 355 38 HOH HOH . D 3 HOH A 56 356 183 HOH HOH . D 3 HOH A 57 357 90 HOH HOH . D 3 HOH A 58 358 127 HOH HOH . D 3 HOH A 59 359 1 HOH HOH . D 3 HOH A 60 360 145 HOH HOH . D 3 HOH A 61 361 133 HOH HOH . D 3 HOH A 62 362 46 HOH HOH . D 3 HOH A 63 363 28 HOH HOH . D 3 HOH A 64 364 69 HOH HOH . D 3 HOH A 65 365 139 HOH HOH . D 3 HOH A 66 366 158 HOH HOH . D 3 HOH A 67 367 100 HOH HOH . D 3 HOH A 68 368 43 HOH HOH . D 3 HOH A 69 369 34 HOH HOH . D 3 HOH A 70 370 70 HOH HOH . D 3 HOH A 71 371 32 HOH HOH . D 3 HOH A 72 372 165 HOH HOH . D 3 HOH A 73 373 106 HOH HOH . D 3 HOH A 74 374 142 HOH HOH . D 3 HOH A 75 375 48 HOH HOH . D 3 HOH A 76 376 64 HOH HOH . D 3 HOH A 77 377 182 HOH HOH . D 3 HOH A 78 378 134 HOH HOH . D 3 HOH A 79 379 103 HOH HOH . D 3 HOH A 80 380 94 HOH HOH . D 3 HOH A 81 381 174 HOH HOH . D 3 HOH A 82 382 179 HOH HOH . D 3 HOH A 83 383 216 HOH HOH . D 3 HOH A 84 384 176 HOH HOH . D 3 HOH A 85 385 167 HOH HOH . D 3 HOH A 86 386 173 HOH HOH . D 3 HOH A 87 387 75 HOH HOH . D 3 HOH A 88 388 178 HOH HOH . D 3 HOH A 89 389 128 HOH HOH . D 3 HOH A 90 390 180 HOH HOH . D 3 HOH A 91 391 169 HOH HOH . D 3 HOH A 92 392 175 HOH HOH . D 3 HOH A 93 393 85 HOH HOH . D 3 HOH A 94 394 131 HOH HOH . D 3 HOH A 95 395 132 HOH HOH . D 3 HOH A 96 396 177 HOH HOH . D 3 HOH A 97 397 98 HOH HOH . D 3 HOH A 98 398 102 HOH HOH . D 3 HOH A 99 399 161 HOH HOH . D 3 HOH A 100 400 159 HOH HOH . D 3 HOH A 101 401 99 HOH HOH . D 3 HOH A 102 402 67 HOH HOH . D 3 HOH A 103 403 119 HOH HOH . D 3 HOH A 104 404 153 HOH HOH . E 3 HOH B 1 201 58 HOH HOH . E 3 HOH B 2 202 124 HOH HOH . E 3 HOH B 3 203 80 HOH HOH . E 3 HOH B 4 204 25 HOH HOH . E 3 HOH B 5 205 73 HOH HOH . E 3 HOH B 6 206 215 HOH HOH . E 3 HOH B 7 207 214 HOH HOH . E 3 HOH B 8 208 63 HOH HOH . E 3 HOH B 9 209 81 HOH HOH . E 3 HOH B 10 210 218 HOH HOH . E 3 HOH B 11 211 20 HOH HOH . E 3 HOH B 12 212 61 HOH HOH . E 3 HOH B 13 213 148 HOH HOH . E 3 HOH B 14 214 93 HOH HOH . E 3 HOH B 15 215 15 HOH HOH . E 3 HOH B 16 216 141 HOH HOH . E 3 HOH B 17 217 138 HOH HOH . E 3 HOH B 18 218 120 HOH HOH . E 3 HOH B 19 219 36 HOH HOH . E 3 HOH B 20 220 17 HOH HOH . E 3 HOH B 21 221 54 HOH HOH . E 3 HOH B 22 222 26 HOH HOH . E 3 HOH B 23 223 30 HOH HOH . E 3 HOH B 24 224 4 HOH HOH . E 3 HOH B 25 225 164 HOH HOH . E 3 HOH B 26 226 110 HOH HOH . E 3 HOH B 27 227 220 HOH HOH . E 3 HOH B 28 228 68 HOH HOH . E 3 HOH B 29 229 39 HOH HOH . E 3 HOH B 30 230 108 HOH HOH . E 3 HOH B 31 231 37 HOH HOH . E 3 HOH B 32 232 104 HOH HOH . E 3 HOH B 33 233 22 HOH HOH . E 3 HOH B 34 234 163 HOH HOH . E 3 HOH B 35 235 55 HOH HOH . E 3 HOH B 36 236 7 HOH HOH . E 3 HOH B 37 237 79 HOH HOH . E 3 HOH B 38 238 13 HOH HOH . E 3 HOH B 39 239 105 HOH HOH . E 3 HOH B 40 240 33 HOH HOH . E 3 HOH B 41 241 121 HOH HOH . E 3 HOH B 42 242 115 HOH HOH . E 3 HOH B 43 243 78 HOH HOH . E 3 HOH B 44 244 89 HOH HOH . E 3 HOH B 45 245 74 HOH HOH . E 3 HOH B 46 246 126 HOH HOH . E 3 HOH B 47 247 82 HOH HOH . E 3 HOH B 48 248 118 HOH HOH . E 3 HOH B 49 249 49 HOH HOH . E 3 HOH B 50 250 29 HOH HOH . E 3 HOH B 51 251 24 HOH HOH . E 3 HOH B 52 252 21 HOH HOH . E 3 HOH B 53 253 117 HOH HOH . E 3 HOH B 54 254 84 HOH HOH . E 3 HOH B 55 255 19 HOH HOH . E 3 HOH B 56 256 41 HOH HOH . E 3 HOH B 57 257 56 HOH HOH . E 3 HOH B 58 258 147 HOH HOH . E 3 HOH B 59 259 59 HOH HOH . E 3 HOH B 60 260 45 HOH HOH . E 3 HOH B 61 261 47 HOH HOH . E 3 HOH B 62 262 57 HOH HOH . E 3 HOH B 63 263 130 HOH HOH . E 3 HOH B 64 264 92 HOH HOH . E 3 HOH B 65 265 10 HOH HOH . E 3 HOH B 66 266 101 HOH HOH . E 3 HOH B 67 267 219 HOH HOH . E 3 HOH B 68 268 122 HOH HOH . E 3 HOH B 69 269 88 HOH HOH . E 3 HOH B 70 270 221 HOH HOH . E 3 HOH B 71 271 95 HOH HOH . E 3 HOH B 72 272 144 HOH HOH . E 3 HOH B 73 273 44 HOH HOH . E 3 HOH B 74 274 143 HOH HOH . E 3 HOH B 75 275 157 HOH HOH . E 3 HOH B 76 276 151 HOH HOH . E 3 HOH B 77 277 171 HOH HOH . E 3 HOH B 78 278 217 HOH HOH . E 3 HOH B 79 279 129 HOH HOH . E 3 HOH B 80 280 135 HOH HOH . E 3 HOH B 81 281 96 HOH HOH . E 3 HOH B 82 282 149 HOH HOH . E 3 HOH B 83 283 162 HOH HOH . E 3 HOH B 84 284 150 HOH HOH . E 3 HOH B 85 285 160 HOH HOH . E 3 HOH B 86 286 222 HOH HOH . E 3 HOH B 87 287 154 HOH HOH . E 3 HOH B 88 288 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KBJ . . . C 2 -31.905 4.706 -24.119 1 11.7 ? C1 KBJ 201 A 1 HETATM 2 C C2 KBJ . . . C 2 -26.764 5.021 -32.854 1 7.71 ? C2 KBJ 201 A 1 HETATM 3 C C3 KBJ . . . C 2 -32.88 8.264 -24.775 1 23.37 ? C3 KBJ 201 A 1 HETATM 4 C C4 KBJ . . . C 2 -28.684 5.178 -31.514 1 11.41 ? C4 KBJ 201 A 1 HETATM 5 C C5 KBJ . . . C 2 -29.516 4.884 -32.685 1 14.33 ? C5 KBJ 201 A 1 HETATM 6 C C6 KBJ . . . C 2 -28.82 4.684 -33.965 1 17.3 ? C6 KBJ 201 A 1 HETATM 7 C C8 KBJ . . . C 2 -30.789 5.149 -30.942 1 10.4 ? C8 KBJ 201 A 1 HETATM 8 C C10 KBJ . . . C 2 -32.008 8.931 -25.635 1 29.57 ? C10 KBJ 201 A 1 HETATM 9 C C11 KBJ . . . C 2 -32.334 9.105 -26.981 1 28.5 ? C11 KBJ 201 A 1 HETATM 10 C C12 KBJ . . . C 2 -33.54 8.615 -27.472 1 31.03 ? C12 KBJ 201 A 1 HETATM 11 O O6 KBJ . . . C 2 -29.477 4.433 -35.007 1 13.81 ? O6 KBJ 201 A 1 HETATM 12 N N1 KBJ . . . C 2 -27.482 4.779 -33.963 1 9.07 ? N1 KBJ 201 A 1 HETATM 13 N N2 KBJ . . . C 2 -25.418 5.103 -32.956 1 8.95 ? N2 KBJ 201 A 1 HETATM 14 N N3 KBJ . . . C 2 -27.339 5.235 -31.644 1 9.85 ? N3 KBJ 201 A 1 HETATM 15 N N7 KBJ . . . C 2 -30.796 4.883 -32.275 1 13.43 ? N7 KBJ 201 A 1 HETATM 16 N N9 KBJ . . . C 2 -29.522 5.31 -30.5 1 13.01 ? N9 KBJ 201 A 1 HETATM 17 C C1' KBJ . . . C 2 -29.107 5.659 -29.146 1 7.98 ? C1' KBJ 201 A 1 HETATM 18 O O4' KBJ . . . C 2 -29.428 4.601 -28.283 1 9.94 ? O4' KBJ 201 A 1 HETATM 19 C C2' KBJ . . . C 2 -29.869 6.861 -28.596 1 6.13 ? C2' KBJ 201 A 1 HETATM 20 O O2' KBJ . . . C 2 -29.339 8.092 -29.053 1 9.61 ? O2' KBJ 201 A 1 HETATM 21 C C3' KBJ . . . C 2 -29.791 6.636 -27.08 1 13.72 ? C3' KBJ 201 A 1 HETATM 22 O O3' KBJ . . . C 2 -28.715 7.378 -26.508 1 10.54 ? O3' KBJ 201 A 1 HETATM 23 C C4' KBJ . . . C 2 -29.53 5.128 -26.943 1 8.19 ? C4' KBJ 201 A 1 HETATM 24 C C5' KBJ . . . C 2 -30.599 4.397 -26.196 1 10.29 ? C5' KBJ 201 A 1 HETATM 25 O O5' KBJ . . . C 2 -30.734 4.967 -24.904 1 11.52 ? O5' KBJ 201 A 1 HETATM 26 O O2 KBJ . . . C 2 -32.535 3.685 -24.332 1 14.12 ? O2 KBJ 201 A 1 HETATM 27 N N4 KBJ . . . C 2 -32.194 5.615 -23.19 1 15.38 ? N4 KBJ 201 A 1 HETATM 28 C C7 KBJ . . . C 2 -31.534 6.914 -23.184 1 15.39 ? C7 KBJ 201 A 1 HETATM 29 C C9 KBJ . . . C 2 -32.519 8.077 -23.319 1 14.01 ? C9 KBJ 201 A 1 HETATM 30 C C13 KBJ . . . C 2 -34.416 7.958 -26.61 1 38.8 ? C13 KBJ 201 A 1 HETATM 31 C C14 KBJ . . . C 2 -34.089 7.785 -25.265 1 31.7 ? C14 KBJ 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #