data_6N3X # _model_server_result.job_id PZcoy0lHzLmvWEndax9Q-A _model_server_result.datetime_utc '2024-11-21 18:01:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n3x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 6N3X # _exptl.entry_id 6N3X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.46 _cell.angle_gamma 90 _cell.entry_id 6N3X _cell.length_a 77.877 _cell.length_b 46.41 _cell.length_c 64.032 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N3X _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6N3X _atom_sites.fract_transf_matrix[1][1] 0.012841 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001002 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015665 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 KBD A 1 201 1 KBD 836 . D 3 EDO A 1 202 1 EDO EDO . E 3 EDO A 1 203 2 EDO EDO . F 4 CL B 1 201 1 CL CL . G 5 HOH A 1 301 309 HOH HOH . G 5 HOH A 2 302 65 HOH HOH . G 5 HOH A 3 303 311 HOH HOH . G 5 HOH A 4 304 312 HOH HOH . G 5 HOH A 5 305 334 HOH HOH . G 5 HOH A 6 306 261 HOH HOH . G 5 HOH A 7 307 171 HOH HOH . G 5 HOH A 8 308 330 HOH HOH . G 5 HOH A 9 309 133 HOH HOH . G 5 HOH A 10 310 161 HOH HOH . G 5 HOH A 11 311 115 HOH HOH . G 5 HOH A 12 312 64 HOH HOH . G 5 HOH A 13 313 185 HOH HOH . G 5 HOH A 14 314 25 HOH HOH . G 5 HOH A 15 315 324 HOH HOH . G 5 HOH A 16 316 235 HOH HOH . G 5 HOH A 17 317 10 HOH HOH . G 5 HOH A 18 318 316 HOH HOH . G 5 HOH A 19 319 30 HOH HOH . G 5 HOH A 20 320 19 HOH HOH . G 5 HOH A 21 321 6 HOH HOH . G 5 HOH A 22 322 308 HOH HOH . G 5 HOH A 23 323 95 HOH HOH . G 5 HOH A 24 324 132 HOH HOH . G 5 HOH A 25 325 228 HOH HOH . G 5 HOH A 26 326 130 HOH HOH . G 5 HOH A 27 327 67 HOH HOH . G 5 HOH A 28 328 92 HOH HOH . G 5 HOH A 29 329 29 HOH HOH . G 5 HOH A 30 330 77 HOH HOH . G 5 HOH A 31 331 104 HOH HOH . G 5 HOH A 32 332 211 HOH HOH . G 5 HOH A 33 333 194 HOH HOH . G 5 HOH A 34 334 18 HOH HOH . G 5 HOH A 35 335 122 HOH HOH . G 5 HOH A 36 336 96 HOH HOH . G 5 HOH A 37 337 35 HOH HOH . G 5 HOH A 38 338 74 HOH HOH . G 5 HOH A 39 339 153 HOH HOH . G 5 HOH A 40 340 85 HOH HOH . G 5 HOH A 41 341 31 HOH HOH . G 5 HOH A 42 342 14 HOH HOH . G 5 HOH A 43 343 296 HOH HOH . G 5 HOH A 44 344 175 HOH HOH . G 5 HOH A 45 345 76 HOH HOH . G 5 HOH A 46 346 173 HOH HOH . G 5 HOH A 47 347 68 HOH HOH . G 5 HOH A 48 348 73 HOH HOH . G 5 HOH A 49 349 276 HOH HOH . G 5 HOH A 50 350 181 HOH HOH . G 5 HOH A 51 351 208 HOH HOH . G 5 HOH A 52 352 71 HOH HOH . G 5 HOH A 53 353 97 HOH HOH . G 5 HOH A 54 354 46 HOH HOH . G 5 HOH A 55 355 52 HOH HOH . G 5 HOH A 56 356 293 HOH HOH . G 5 HOH A 57 357 188 HOH HOH . G 5 HOH A 58 358 127 HOH HOH . G 5 HOH A 59 359 66 HOH HOH . G 5 HOH A 60 360 141 HOH HOH . G 5 HOH A 61 361 16 HOH HOH . G 5 HOH A 62 362 120 HOH HOH . G 5 HOH A 63 363 306 HOH HOH . G 5 HOH A 64 364 116 HOH HOH . G 5 HOH A 65 365 94 HOH HOH . G 5 HOH A 66 366 121 HOH HOH . G 5 HOH A 67 367 212 HOH HOH . G 5 HOH A 68 368 278 HOH HOH . G 5 HOH A 69 369 160 HOH HOH . G 5 HOH A 70 370 191 HOH HOH . G 5 HOH A 71 371 40 HOH HOH . G 5 HOH A 72 372 143 HOH HOH . G 5 HOH A 73 373 118 HOH HOH . G 5 HOH A 74 374 163 HOH HOH . G 5 HOH A 75 375 125 HOH HOH . G 5 HOH A 76 376 34 HOH HOH . G 5 HOH A 77 377 263 HOH HOH . G 5 HOH A 78 378 4 HOH HOH . G 5 HOH A 79 379 214 HOH HOH . G 5 HOH A 80 380 49 HOH HOH . G 5 HOH A 81 381 147 HOH HOH . G 5 HOH A 82 382 158 HOH HOH . G 5 HOH A 83 383 106 HOH HOH . G 5 HOH A 84 384 195 HOH HOH . G 5 HOH A 85 385 151 HOH HOH . G 5 HOH A 86 386 172 HOH HOH . G 5 HOH A 87 387 180 HOH HOH . G 5 HOH A 88 388 167 HOH HOH . G 5 HOH A 89 389 23 HOH HOH . G 5 HOH A 90 390 190 HOH HOH . G 5 HOH A 91 391 48 HOH HOH . G 5 HOH A 92 392 56 HOH HOH . G 5 HOH A 93 393 100 HOH HOH . G 5 HOH A 94 394 156 HOH HOH . G 5 HOH A 95 395 192 HOH HOH . G 5 HOH A 96 396 165 HOH HOH . G 5 HOH A 97 397 27 HOH HOH . G 5 HOH A 98 398 215 HOH HOH . G 5 HOH A 99 399 335 HOH HOH . G 5 HOH A 100 400 43 HOH HOH . G 5 HOH A 101 401 193 HOH HOH . G 5 HOH A 102 402 57 HOH HOH . G 5 HOH A 103 403 138 HOH HOH . G 5 HOH A 104 404 307 HOH HOH . G 5 HOH A 105 405 328 HOH HOH . G 5 HOH A 106 406 217 HOH HOH . G 5 HOH A 107 407 24 HOH HOH . G 5 HOH A 108 408 109 HOH HOH . G 5 HOH A 109 409 60 HOH HOH . G 5 HOH A 110 410 89 HOH HOH . G 5 HOH A 111 411 101 HOH HOH . G 5 HOH A 112 412 268 HOH HOH . G 5 HOH A 113 413 103 HOH HOH . G 5 HOH A 114 414 2 HOH HOH . G 5 HOH A 115 415 202 HOH HOH . G 5 HOH A 116 416 149 HOH HOH . G 5 HOH A 117 417 36 HOH HOH . G 5 HOH A 118 418 176 HOH HOH . G 5 HOH A 119 419 264 HOH HOH . G 5 HOH A 120 420 216 HOH HOH . G 5 HOH A 121 421 110 HOH HOH . G 5 HOH A 122 422 142 HOH HOH . G 5 HOH A 123 423 318 HOH HOH . G 5 HOH A 124 424 272 HOH HOH . G 5 HOH A 125 425 282 HOH HOH . G 5 HOH A 126 426 135 HOH HOH . G 5 HOH A 127 427 319 HOH HOH . G 5 HOH A 128 428 315 HOH HOH . G 5 HOH A 129 429 250 HOH HOH . G 5 HOH A 130 430 305 HOH HOH . G 5 HOH A 131 431 168 HOH HOH . G 5 HOH A 132 432 219 HOH HOH . G 5 HOH A 133 433 78 HOH HOH . G 5 HOH A 134 434 321 HOH HOH . G 5 HOH A 135 435 221 HOH HOH . G 5 HOH A 136 436 218 HOH HOH . G 5 HOH A 137 437 273 HOH HOH . G 5 HOH A 138 438 283 HOH HOH . G 5 HOH A 139 439 277 HOH HOH . G 5 HOH A 140 440 253 HOH HOH . G 5 HOH A 141 441 200 HOH HOH . G 5 HOH A 142 442 280 HOH HOH . G 5 HOH A 143 443 285 HOH HOH . G 5 HOH A 144 444 251 HOH HOH . G 5 HOH A 145 445 150 HOH HOH . G 5 HOH A 146 446 79 HOH HOH . G 5 HOH A 147 447 140 HOH HOH . G 5 HOH A 148 448 72 HOH HOH . G 5 HOH A 149 449 323 HOH HOH . G 5 HOH A 150 450 299 HOH HOH . G 5 HOH A 151 451 224 HOH HOH . H 5 HOH B 1 301 314 HOH HOH . H 5 HOH B 2 302 310 HOH HOH . H 5 HOH B 3 303 322 HOH HOH . H 5 HOH B 4 304 145 HOH HOH . H 5 HOH B 5 305 98 HOH HOH . H 5 HOH B 6 306 327 HOH HOH . H 5 HOH B 7 307 207 HOH HOH . H 5 HOH B 8 308 333 HOH HOH . H 5 HOH B 9 309 249 HOH HOH . H 5 HOH B 10 310 197 HOH HOH . H 5 HOH B 11 311 246 HOH HOH . H 5 HOH B 12 312 182 HOH HOH . H 5 HOH B 13 313 63 HOH HOH . H 5 HOH B 14 314 186 HOH HOH . H 5 HOH B 15 315 242 HOH HOH . H 5 HOH B 16 316 55 HOH HOH . H 5 HOH B 17 317 134 HOH HOH . H 5 HOH B 18 318 12 HOH HOH . H 5 HOH B 19 319 113 HOH HOH . H 5 HOH B 20 320 20 HOH HOH . H 5 HOH B 21 321 21 HOH HOH . H 5 HOH B 22 322 102 HOH HOH . H 5 HOH B 23 323 231 HOH HOH . H 5 HOH B 24 324 189 HOH HOH . H 5 HOH B 25 325 37 HOH HOH . H 5 HOH B 26 326 105 HOH HOH . H 5 HOH B 27 327 131 HOH HOH . H 5 HOH B 28 328 32 HOH HOH . H 5 HOH B 29 329 320 HOH HOH . H 5 HOH B 30 330 260 HOH HOH . H 5 HOH B 31 331 41 HOH HOH . H 5 HOH B 32 332 88 HOH HOH . H 5 HOH B 33 333 93 HOH HOH . H 5 HOH B 34 334 8 HOH HOH . H 5 HOH B 35 335 9 HOH HOH . H 5 HOH B 36 336 128 HOH HOH . H 5 HOH B 37 337 129 HOH HOH . H 5 HOH B 38 338 45 HOH HOH . H 5 HOH B 39 339 61 HOH HOH . H 5 HOH B 40 340 33 HOH HOH . H 5 HOH B 41 341 62 HOH HOH . H 5 HOH B 42 342 11 HOH HOH . H 5 HOH B 43 343 184 HOH HOH . H 5 HOH B 44 344 155 HOH HOH . H 5 HOH B 45 345 59 HOH HOH . H 5 HOH B 46 346 51 HOH HOH . H 5 HOH B 47 347 254 HOH HOH . H 5 HOH B 48 348 210 HOH HOH . H 5 HOH B 49 349 13 HOH HOH . H 5 HOH B 50 350 83 HOH HOH . H 5 HOH B 51 351 54 HOH HOH . H 5 HOH B 52 352 81 HOH HOH . H 5 HOH B 53 353 187 HOH HOH . H 5 HOH B 54 354 70 HOH HOH . H 5 HOH B 55 355 154 HOH HOH . H 5 HOH B 56 356 114 HOH HOH . H 5 HOH B 57 357 126 HOH HOH . H 5 HOH B 58 358 152 HOH HOH . H 5 HOH B 59 359 75 HOH HOH . H 5 HOH B 60 360 146 HOH HOH . H 5 HOH B 61 361 44 HOH HOH . H 5 HOH B 62 362 252 HOH HOH . H 5 HOH B 63 363 248 HOH HOH . H 5 HOH B 64 364 17 HOH HOH . H 5 HOH B 65 365 99 HOH HOH . H 5 HOH B 66 366 139 HOH HOH . H 5 HOH B 67 367 164 HOH HOH . H 5 HOH B 68 368 203 HOH HOH . H 5 HOH B 69 369 298 HOH HOH . H 5 HOH B 70 370 53 HOH HOH . H 5 HOH B 71 371 162 HOH HOH . H 5 HOH B 72 372 144 HOH HOH . H 5 HOH B 73 373 50 HOH HOH . H 5 HOH B 74 374 233 HOH HOH . H 5 HOH B 75 375 7 HOH HOH . H 5 HOH B 76 376 220 HOH HOH . H 5 HOH B 77 377 47 HOH HOH . H 5 HOH B 78 378 28 HOH HOH . H 5 HOH B 79 379 117 HOH HOH . H 5 HOH B 80 380 157 HOH HOH . H 5 HOH B 81 381 86 HOH HOH . H 5 HOH B 82 382 148 HOH HOH . H 5 HOH B 83 383 42 HOH HOH . H 5 HOH B 84 384 201 HOH HOH . H 5 HOH B 85 385 87 HOH HOH . H 5 HOH B 86 386 159 HOH HOH . H 5 HOH B 87 387 169 HOH HOH . H 5 HOH B 88 388 38 HOH HOH . H 5 HOH B 89 389 166 HOH HOH . H 5 HOH B 90 390 183 HOH HOH . H 5 HOH B 91 391 179 HOH HOH . H 5 HOH B 92 392 337 HOH HOH . H 5 HOH B 93 393 82 HOH HOH . H 5 HOH B 94 394 225 HOH HOH . H 5 HOH B 95 395 69 HOH HOH . H 5 HOH B 96 396 111 HOH HOH . H 5 HOH B 97 397 198 HOH HOH . H 5 HOH B 98 398 255 HOH HOH . H 5 HOH B 99 399 247 HOH HOH . H 5 HOH B 100 400 90 HOH HOH . H 5 HOH B 101 401 209 HOH HOH . H 5 HOH B 102 402 205 HOH HOH . H 5 HOH B 103 403 238 HOH HOH . H 5 HOH B 104 404 237 HOH HOH . H 5 HOH B 105 405 331 HOH HOH . H 5 HOH B 106 406 91 HOH HOH . H 5 HOH B 107 407 84 HOH HOH . H 5 HOH B 108 408 178 HOH HOH . H 5 HOH B 109 409 300 HOH HOH . H 5 HOH B 110 410 119 HOH HOH . H 5 HOH B 111 411 234 HOH HOH . H 5 HOH B 112 412 262 HOH HOH . H 5 HOH B 113 413 80 HOH HOH . H 5 HOH B 114 414 170 HOH HOH . H 5 HOH B 115 415 317 HOH HOH . H 5 HOH B 116 416 108 HOH HOH . H 5 HOH B 117 417 297 HOH HOH . H 5 HOH B 118 418 232 HOH HOH . H 5 HOH B 119 419 239 HOH HOH . H 5 HOH B 120 420 325 HOH HOH . H 5 HOH B 121 421 284 HOH HOH . H 5 HOH B 122 422 196 HOH HOH . H 5 HOH B 123 423 123 HOH HOH . H 5 HOH B 124 424 256 HOH HOH . H 5 HOH B 125 425 136 HOH HOH . H 5 HOH B 126 426 177 HOH HOH . H 5 HOH B 127 427 332 HOH HOH . H 5 HOH B 128 428 279 HOH HOH . H 5 HOH B 129 429 281 HOH HOH . H 5 HOH B 130 430 304 HOH HOH . H 5 HOH B 131 431 326 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 -23.646 -14.071 -29.865 1 26.54 ? C1 EDO 203 A 1 HETATM 2 O O1 EDO . . . E 3 -24.469 -14.892 -29.029 1 34.07 ? O1 EDO 203 A 1 HETATM 3 C C2 EDO . . . E 3 -22.521 -13.455 -29.042 1 18.65 ? C2 EDO 203 A 1 HETATM 4 O O2 EDO . . . E 3 -21.641 -14.478 -28.559 1 38.55 ? O2 EDO 203 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #