data_6N3Y # _model_server_result.job_id A9wOhnxmPr8nVX_wlNSdiw _model_server_result.datetime_utc '2025-01-25 11:50:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n3y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6N3Y # _exptl.entry_id 6N3Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 469.451 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-{[2-(1H-indol-3-yl)ethyl]carbamoyl}guanosine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.32 _cell.angle_gamma 90 _cell.entry_id 6N3Y _cell.length_a 78.161 _cell.length_b 46.327 _cell.length_c 63.896 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N3Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H23 N7 O6' _chem_comp.formula_weight 469.451 _chem_comp.id HHJ _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-{[2-(1H-indol-3-yl)ethyl]carbamoyl}guanosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C2 HHJ sing 129 n n N1 C2 HHJ doub 130 n n N1 C6 HHJ sing 131 n n C2 N3 HHJ sing 132 n n O6 C6 HHJ doub 133 n n C6 C5 HHJ sing 134 n n N3 C4 HHJ sing 135 n n O2' C2' HHJ sing 136 n n C5 C4 HHJ doub 137 n y C5 N7 HHJ sing 138 n y C4 N9 HHJ sing 139 n y C20 C19 HHJ doub 140 n y C20 C21 HHJ sing 141 n y C19 C18 HHJ sing 142 n y N7 C8 HHJ doub 143 n y N9 C8 HHJ sing 144 n y N9 C1' HHJ sing 145 n n C2' C1' HHJ sing 146 n n C2' C3' HHJ sing 147 n n C1' O4' HHJ sing 148 n n C21 C22 HHJ doub 149 n y C18 C17 HHJ doub 150 n y O3' C3' HHJ sing 151 n n C3' C4' HHJ sing 152 n n C22 C17 HHJ sing 153 n y C22 N23 HHJ sing 154 n y C17 C12 HHJ sing 155 n y O4' C4' HHJ sing 156 n n C4' C5' HHJ sing 157 n n N23 C16 HHJ sing 158 n y C12 C10 HHJ sing 159 n n C12 C16 HHJ doub 160 n y C10 C9 HHJ sing 161 n n C5' O5' HHJ sing 162 n n C9 N4 HHJ sing 163 n n O5' C1 HHJ sing 164 n n N4 C1 HHJ sing 165 n n C1 O2 HHJ doub 166 n n N2 H1 HHJ sing 167 n n N2 H2 HHJ sing 168 n n N3 H3 HHJ sing 169 n n C8 H4 HHJ sing 170 n n C1' H5 HHJ sing 171 n n C2' H6 HHJ sing 172 n n O2' H7 HHJ sing 173 n n C3' H8 HHJ sing 174 n n O3' H9 HHJ sing 175 n n C4' H10 HHJ sing 176 n n C5' H11 HHJ sing 177 n n C5' H12 HHJ sing 178 n n N4 H13 HHJ sing 179 n n C9 H14 HHJ sing 180 n n C9 H15 HHJ sing 181 n n C10 H16 HHJ sing 182 n n C10 H17 HHJ sing 183 n n C16 H18 HHJ sing 184 n n C18 H19 HHJ sing 185 n n C19 H20 HHJ sing 186 n n C20 H21 HHJ sing 187 n n C21 H22 HHJ sing 188 n n N23 H23 HHJ sing 189 n n # _atom_sites.entry_id 6N3Y _atom_sites.fract_transf_matrix[1][1] 0.012794 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000967 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021586 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015695 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HHJ A 1 201 1 HHJ 098 . D 3 CL B 1 201 1 CL CL . E 3 CL B 1 202 2 CL CL . F 4 HOH A 1 301 4 HOH HOH . F 4 HOH A 2 302 23 HOH HOH . F 4 HOH A 3 303 41 HOH HOH . F 4 HOH A 4 304 18 HOH HOH . F 4 HOH A 5 305 9 HOH HOH . F 4 HOH A 6 306 15 HOH HOH . F 4 HOH A 7 307 26 HOH HOH . F 4 HOH A 8 308 31 HOH HOH . F 4 HOH A 9 309 11 HOH HOH . F 4 HOH A 10 310 35 HOH HOH . F 4 HOH A 11 311 37 HOH HOH . F 4 HOH A 12 312 20 HOH HOH . F 4 HOH A 13 313 38 HOH HOH . F 4 HOH A 14 314 5 HOH HOH . F 4 HOH A 15 315 29 HOH HOH . F 4 HOH A 16 316 24 HOH HOH . F 4 HOH A 17 317 13 HOH HOH . F 4 HOH A 18 318 28 HOH HOH . F 4 HOH A 19 319 55 HOH HOH . F 4 HOH A 20 320 10 HOH HOH . F 4 HOH A 21 321 44 HOH HOH . F 4 HOH A 22 322 51 HOH HOH . F 4 HOH A 23 323 34 HOH HOH . F 4 HOH A 24 324 49 HOH HOH . F 4 HOH A 25 325 40 HOH HOH . F 4 HOH A 26 326 50 HOH HOH . F 4 HOH A 27 327 52 HOH HOH . F 4 HOH A 28 328 1 HOH HOH . F 4 HOH A 29 329 45 HOH HOH . F 4 HOH A 30 330 42 HOH HOH . G 4 HOH B 1 301 17 HOH HOH . G 4 HOH B 2 302 54 HOH HOH . G 4 HOH B 3 303 12 HOH HOH . G 4 HOH B 4 304 27 HOH HOH . G 4 HOH B 5 305 8 HOH HOH . G 4 HOH B 6 306 19 HOH HOH . G 4 HOH B 7 307 33 HOH HOH . G 4 HOH B 8 308 47 HOH HOH . G 4 HOH B 9 309 43 HOH HOH . G 4 HOH B 10 310 14 HOH HOH . G 4 HOH B 11 311 16 HOH HOH . G 4 HOH B 12 312 2 HOH HOH . G 4 HOH B 13 313 56 HOH HOH . G 4 HOH B 14 314 22 HOH HOH . G 4 HOH B 15 315 36 HOH HOH . G 4 HOH B 16 316 53 HOH HOH . G 4 HOH B 17 317 46 HOH HOH . G 4 HOH B 18 318 7 HOH HOH . G 4 HOH B 19 319 3 HOH HOH . G 4 HOH B 20 320 48 HOH HOH . G 4 HOH B 21 321 25 HOH HOH . G 4 HOH B 22 322 6 HOH HOH . G 4 HOH B 23 323 32 HOH HOH . G 4 HOH B 24 324 39 HOH HOH . G 4 HOH B 25 325 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 HHJ . . . C 2 -29.88 4.4 -35.015 1 18.64 ? O6 HHJ 201 A 1 HETATM 2 C C6 HHJ . . . C 2 -29.199 4.643 -33.998 1 16.91 ? C6 HHJ 201 A 1 HETATM 3 N N1 HHJ . . . C 2 -27.861 4.723 -34.048 1 16.72 ? N1 HHJ 201 A 1 HETATM 4 C C2 HHJ . . . C 2 -27.097 4.981 -32.979 1 13.8 ? C2 HHJ 201 A 1 HETATM 5 N N2 HHJ . . . C 2 -25.749 5.044 -33.139 1 18.02 ? N2 HHJ 201 A 1 HETATM 6 N N3 HHJ . . . C 2 -27.641 5.205 -31.759 1 19.69 ? N3 HHJ 201 A 1 HETATM 7 C C4 HHJ . . . C 2 -28.982 5.153 -31.57 1 24.57 ? C4 HHJ 201 A 1 HETATM 8 C C5 HHJ . . . C 2 -29.859 4.864 -32.709 1 19.93 ? C5 HHJ 201 A 1 HETATM 9 N N7 HHJ . . . C 2 -31.127 4.871 -32.256 1 27 ? N7 HHJ 201 A 1 HETATM 10 C C8 HHJ . . . C 2 -31.07 5.149 -30.926 1 25.81 ? C8 HHJ 201 A 1 HETATM 11 N N9 HHJ . . . C 2 -29.794 5.3 -30.523 1 24.53 ? N9 HHJ 201 A 1 HETATM 12 C C1' HHJ . . . C 2 -29.372 5.666 -29.175 1 16.97 ? C1' HHJ 201 A 1 HETATM 13 O O4' HHJ . . . C 2 -29.727 4.636 -28.294 1 14.09 ? O4' HHJ 201 A 1 HETATM 14 C C2' HHJ . . . C 2 -30.104 6.905 -28.657 1 20.33 ? C2' HHJ 201 A 1 HETATM 15 O O2' HHJ . . . C 2 -29.524 8.112 -29.114 1 26.1 ? O2' HHJ 201 A 1 HETATM 16 C C3' HHJ . . . C 2 -30.04 6.712 -27.138 1 21.34 ? C3' HHJ 201 A 1 HETATM 17 O O3' HHJ . . . C 2 -28.914 7.413 -26.609 1 19.98 ? O3' HHJ 201 A 1 HETATM 18 C C4' HHJ . . . C 2 -29.867 5.195 -26.966 1 19.08 ? C4' HHJ 201 A 1 HETATM 19 C C5' HHJ . . . C 2 -31.011 4.511 -26.276 1 22.11 ? C5' HHJ 201 A 1 HETATM 20 O O5' HHJ . . . C 2 -30.71 4.316 -24.907 1 37.86 ? O5' HHJ 201 A 1 HETATM 21 C C1 HHJ . . . C 2 -31.644 4.716 -23.89 1 43.6 ? C1 HHJ 201 A 1 HETATM 22 O O2 HHJ . . . C 2 -32.728 4.162 -23.84 1 48.26 ? O2 HHJ 201 A 1 HETATM 23 N N4 HHJ . . . C 2 -31.215 5.685 -23.093 1 50.15 ? N4 HHJ 201 A 1 HETATM 24 C C9 HHJ . . . C 2 -32.07 6.69 -22.511 1 41.91 ? C9 HHJ 201 A 1 HETATM 25 C C10 HHJ . . . C 2 -32.514 7.801 -23.457 1 25.11 ? C10 HHJ 201 A 1 HETATM 26 C C12 HHJ . . . C 2 -33.985 8.022 -23.188 1 35.11 ? C12 HHJ 201 A 1 HETATM 27 C C16 HHJ . . . C 2 -35.025 7.824 -24.089 1 42.16 ? C16 HHJ 201 A 1 HETATM 28 C C17 HHJ . . . C 2 -34.573 8.432 -21.992 1 51.19 ? C17 HHJ 201 A 1 HETATM 29 C C18 HHJ . . . C 2 -34.001 8.764 -20.763 1 24.94 ? C18 HHJ 201 A 1 HETATM 30 C C19 HHJ . . . C 2 -34.825 9.156 -19.71 1 23.7 ? C19 HHJ 201 A 1 HETATM 31 C C20 HHJ . . . C 2 -36.208 9.214 -19.9 1 26.34 ? C20 HHJ 201 A 1 HETATM 32 C C21 HHJ . . . C 2 -36.767 8.883 -21.134 1 48.88 ? C21 HHJ 201 A 1 HETATM 33 C C22 HHJ . . . C 2 -35.946 8.487 -22.187 1 55.46 ? C22 HHJ 201 A 1 HETATM 34 N N23 HHJ . . . C 2 -36.197 8.113 -23.467 1 53.05 ? N23 HHJ 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 34 #