data_6N48 # _model_server_result.job_id lehxUCbpayGIOnKJLme-iA _model_server_result.datetime_utc '2024-11-23 07:27:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n48 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1402}' # _entry.id 6N48 # _exptl.entry_id 6N48 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.434 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2,3-dihydroxypropyl (7Z)-tetradec-7-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6N48 _cell.length_a 49.15 _cell.length_b 66.06 _cell.length_c 303.51 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N48 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 255 A CYS 1106 1_555 A SG CYS 340 A CYS 1191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf2 A SG CYS 333 A CYS 1184 1_555 A SG CYS 339 A CYS 1190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? # _chem_comp.formula 'C17 H32 O4' _chem_comp.formula_weight 300.434 _chem_comp.id 1WV _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2,3-dihydroxypropyl (7Z)-tetradec-7-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 O21 1WV sing 1 n n C20 C18 1WV sing 2 n n O19 C18 1WV sing 3 n n C18 C17 1WV sing 4 n n C17 O16 1WV sing 5 n n O16 C14 1WV sing 6 n n C14 O15 1WV doub 7 n n C14 C13 1WV sing 8 n n C13 C12 1WV sing 9 n n C12 C11 1WV sing 10 n n C11 C10 1WV sing 11 n n C10 C09 1WV sing 12 n n C09 C08 1WV sing 13 n n C08 C07 1WV doub 14 z n C10 H1 1WV sing 15 n n C13 H2 1WV sing 16 n n C17 H3 1WV sing 17 n n C17 H4 1WV sing 18 n n C20 H5 1WV sing 19 n n C20 H6 1WV sing 20 n n C07 H8 1WV sing 21 n n C08 H10 1WV sing 22 n n C09 H12 1WV sing 23 n n C09 H13 1WV sing 24 n n C11 H14 1WV sing 25 n n C12 H15 1WV sing 26 n n C18 H16 1WV sing 27 n n O19 H17 1WV sing 28 n n O21 H18 1WV sing 29 n n C07 C1 1WV sing 30 n n C1 C2 1WV sing 31 n n C2 C3 1WV sing 32 n n C3 C4 1WV sing 33 n n C4 C5 1WV sing 34 n n C5 C6 1WV sing 35 n n C10 H7 1WV sing 36 n n C13 H9 1WV sing 37 n n C11 H11 1WV sing 38 n n C12 H19 1WV sing 39 n n C1 H20 1WV sing 40 n n C1 H21 1WV sing 41 n n C2 H22 1WV sing 42 n n C2 H23 1WV sing 43 n n C3 H24 1WV sing 44 n n C3 H25 1WV sing 45 n n C4 H26 1WV sing 46 n n C4 H27 1WV sing 47 n n C5 H28 1WV sing 48 n n C5 H29 1WV sing 49 n n C6 H30 1WV sing 50 n n C6 H31 1WV sing 51 n n C6 H32 1WV sing 52 n n # _atom_sites.entry_id 6N48 _atom_sites.fract_transf_matrix[1][1] 0.020346 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015138 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 P0G A 1 1401 1401 P0G P0G . D 4 1WV A 1 1402 1402 1WV 1WV . E 5 KBY A 1 1403 1403 KBY KBY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 1WV . . . D 4 -13.702 -20.305 -50.531 1 67.3 ? C10 1WV 1402 A 1 HETATM 2 C C13 1WV . . . D 4 -13.015 -19.467 -53.856 1 80.03 ? C13 1WV 1402 A 1 HETATM 3 C C17 1WV . . . D 4 -12.677 -20.117 -57.458 1 90.09 ? C17 1WV 1402 A 1 HETATM 4 C C20 1WV . . . D 4 -13.1 -21.143 -59.693 1 90.8 ? C20 1WV 1402 A 1 HETATM 5 C C07 1WV . . . D 4 -14.182 -20.972 -46.776 1 55.93 ? C07 1WV 1402 A 1 HETATM 6 C C08 1WV . . . D 4 -14.611 -20.915 -48.241 1 55.63 ? C08 1WV 1402 A 1 HETATM 7 C C09 1WV . . . D 4 -13.77 -19.931 -49.052 1 65.55 ? C09 1WV 1402 A 1 HETATM 8 C C11 1WV . . . D 4 -12.788 -19.374 -51.324 1 68.53 ? C11 1WV 1402 A 1 HETATM 9 C C12 1WV . . . D 4 -12.294 -20.008 -52.623 1 68.41 ? C12 1WV 1402 A 1 HETATM 10 C C14 1WV . . . D 4 -12.325 -19.883 -55.154 1 90.97 ? C14 1WV 1402 A 1 HETATM 11 O O15 1WV . . . D 4 -11.775 -21.161 -54.997 1 88.75 ? O15 1WV 1402 A 1 HETATM 12 O O16 1WV . . . D 4 -13.252 -19.901 -56.201 1 96.65 ? O16 1WV 1402 A 1 HETATM 13 C C18 1WV . . . D 4 -13.751 -20.662 -58.398 1 100.46 ? C18 1WV 1402 A 1 HETATM 14 O O19 1WV . . . D 4 -14.675 -19.65 -58.687 1 97.68 ? O19 1WV 1402 A 1 HETATM 15 O O21 1WV . . . D 4 -13.619 -22.405 -60.013 1 85.42 ? O21 1WV 1402 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 64 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #