data_6N48 # _model_server_result.job_id GxuW7cCtw1zhjnWEFCB7XA _model_server_result.datetime_utc '2024-11-23 07:21:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n48 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1403}' # _entry.id 6N48 # _exptl.entry_id 6N48 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 669.851 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(3R)-4-(4-tert-butylphenyl)-3-({2-[(4-methoxyphenyl)sulfanyl]-5-[methyl(propan-2-yl)sulfamoyl]benzene-1-carbonyl}amino)butanoyl]glycine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6N48 _cell.length_a 49.15 _cell.length_b 66.06 _cell.length_c 303.51 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N48 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 255 A CYS 1106 1_555 A SG CYS 340 A CYS 1191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf2 A SG CYS 333 A CYS 1184 1_555 A SG CYS 339 A CYS 1190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? # _chem_comp.formula 'C34 H43 N3 O7 S2' _chem_comp.formula_weight 669.851 _chem_comp.id KBY _chem_comp.mon_nstd_flag . _chem_comp.name N-[(3R)-4-(4-tert-butylphenyl)-3-({2-[(4-methoxyphenyl)sulfanyl]-5-[methyl(propan-2-yl)sulfamoyl]benzene-1-carbonyl}amino)butanoyl]glycine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C12 KBY doub 223 n y C1 C3 KBY sing 224 n y C2 O3 KBY sing 225 n n C2 C14 KBY doub 226 n y C2 C11 KBY sing 227 n y C3 C4 KBY doub 228 n y C3 C17 KBY sing 229 n n C4 C13 KBY sing 230 n y C4 S2 KBY sing 231 n n C5 C10 KBY sing 232 n y C5 C15 KBY doub 233 n y C5 S2 KBY sing 234 n n C6 N1 KBY sing 235 n n C7 C8 KBY sing 236 n n C7 C9 KBY sing 237 n n C7 N1 KBY sing 238 n n C10 C11 KBY doub 239 n y N1 S1 KBY sing 240 n n N2 C17 KBY sing 241 n n N2 C18 KBY sing 242 n n C12 C19 KBY sing 243 n y C12 S1 KBY sing 244 n n N3 C33 KBY sing 245 n n N3 C32 KBY sing 246 n n C13 C19 KBY doub 247 n y C14 C15 KBY sing 248 n y C16 O3 KBY sing 249 n n C17 O4 KBY doub 250 n n C18 C20 KBY sing 251 n n C18 C21 KBY sing 252 n n C20 C22 KBY sing 253 n n C21 C32 KBY sing 254 n n C22 C23 KBY doub 255 n y C22 C27 KBY sing 256 n y C23 C24 KBY sing 257 n y C24 C25 KBY doub 258 n y C25 C28 KBY sing 259 n n C25 C26 KBY sing 260 n y C26 C27 KBY doub 261 n y C28 C29 KBY sing 262 n n C28 C30 KBY sing 263 n n C28 C31 KBY sing 264 n n C32 O5 KBY doub 265 n n C33 C34 KBY sing 266 n n C34 O6 KBY doub 267 n n C34 O7 KBY sing 268 n n O1 S1 KBY doub 269 n n O2 S1 KBY doub 270 n n C1 H1 KBY sing 271 n n C6 H2 KBY sing 272 n n C6 H3 KBY sing 273 n n C6 H4 KBY sing 274 n n C7 H5 KBY sing 275 n n C8 H6 KBY sing 276 n n C8 H7 KBY sing 277 n n C8 H8 KBY sing 278 n n C9 H9 KBY sing 279 n n C9 H10 KBY sing 280 n n C9 H11 KBY sing 281 n n C10 H12 KBY sing 282 n n C11 H13 KBY sing 283 n n N2 H14 KBY sing 284 n n N3 H15 KBY sing 285 n n C13 H16 KBY sing 286 n n C14 H17 KBY sing 287 n n C15 H18 KBY sing 288 n n C16 H19 KBY sing 289 n n C16 H20 KBY sing 290 n n C16 H21 KBY sing 291 n n C18 H22 KBY sing 292 n n C19 H23 KBY sing 293 n n C20 H24 KBY sing 294 n n C20 H25 KBY sing 295 n n C21 H26 KBY sing 296 n n C21 H27 KBY sing 297 n n C23 H28 KBY sing 298 n n C24 H29 KBY sing 299 n n C26 H30 KBY sing 300 n n C27 H31 KBY sing 301 n n C29 H32 KBY sing 302 n n C29 H33 KBY sing 303 n n C29 H34 KBY sing 304 n n C30 H35 KBY sing 305 n n C30 H36 KBY sing 306 n n C30 H37 KBY sing 307 n n C31 H38 KBY sing 308 n n C31 H39 KBY sing 309 n n C31 H40 KBY sing 310 n n C33 H41 KBY sing 311 n n C33 H42 KBY sing 312 n n O7 H43 KBY sing 313 n n # _atom_sites.entry_id 6N48 _atom_sites.fract_transf_matrix[1][1] 0.020346 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015138 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 P0G A 1 1401 1401 P0G P0G . D 4 1WV A 1 1402 1402 1WV 1WV . E 5 KBY A 1 1403 1403 KBY KBY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KBY . . . E 5 13.508 -8.01 -20.617 1 82.41 ? C1 KBY 1403 A 1 HETATM 2 C C2 KBY . . . E 5 7.332 -8.559 -25.167 1 67.76 ? C2 KBY 1403 A 1 HETATM 3 C C3 KBY . . . E 5 12.643 -7.065 -21.151 1 82.66 ? C3 KBY 1403 A 1 HETATM 4 C C4 KBY . . . E 5 11.426 -7.47 -21.719 1 82.87 ? C4 KBY 1403 A 1 HETATM 5 C C5 KBY . . . E 5 9.069 -7.177 -23.506 1 83.86 ? C5 KBY 1403 A 1 HETATM 6 C C6 KBY . . . E 5 13.529 -9.904 -17.56 1 82.09 ? C6 KBY 1403 A 1 HETATM 7 C C7 KBY . . . E 5 12.777 -12.096 -18.389 1 78.66 ? C7 KBY 1403 A 1 HETATM 8 C C8 KBY . . . E 5 11.398 -11.466 -18.137 1 65.47 ? C8 KBY 1403 A 1 HETATM 9 C C9 KBY . . . E 5 13.081 -13.196 -17.358 1 73.14 ? C9 KBY 1403 A 1 HETATM 10 C C10 KBY . . . E 5 7.738 -7.333 -23.138 1 82.29 ? C10 KBY 1403 A 1 HETATM 11 C C11 KBY . . . E 5 6.869 -8.026 -23.973 1 74.03 ? C11 KBY 1403 A 1 HETATM 12 N N1 KBY . . . E 5 13.864 -11.08 -18.347 1 87.51 ? N1 KBY 1403 A 1 HETATM 13 C C12 KBY . . . E 5 13.18 -9.367 -20.643 1 80.73 ? C12 KBY 1403 A 1 HETATM 14 C C13 KBY . . . E 5 11.097 -8.816 -21.752 1 79.7 ? C13 KBY 1403 A 1 HETATM 15 C C14 KBY . . . E 5 8.661 -8.408 -25.532 1 79.06 ? C14 KBY 1403 A 1 HETATM 16 C C15 KBY . . . E 5 9.529 -7.717 -24.698 1 83.54 ? C15 KBY 1403 A 1 HETATM 17 C C16 KBY . . . E 5 5.441 -9.928 -25.284 1 55.82 ? C16 KBY 1403 A 1 HETATM 18 C C17 KBY . . . E 5 13.099 -5.572 -21.055 1 93.68 ? C17 KBY 1403 A 1 HETATM 19 C C19 KBY . . . E 5 11.973 -9.76 -21.215 1 79.55 ? C19 KBY 1403 A 1 HETATM 20 O O1 KBY . . . E 5 15.728 -10.075 -19.941 1 102.17 ? O1 KBY 1403 A 1 HETATM 21 O O2 KBY . . . E 5 14.419 -11.833 -20.826 1 79.23 ? O2 KBY 1403 A 1 HETATM 22 O O3 KBY . . . E 5 6.447 -9.255 -26.001 1 61.11 ? O3 KBY 1403 A 1 HETATM 23 O O4 KBY . . . E 5 12.311 -4.672 -21.081 1 90.13 ? O4 KBY 1403 A 1 HETATM 24 S S1 KBY . . . E 5 14.335 -10.622 -19.936 1 91.45 ? S1 KBY 1403 A 1 HETATM 25 S S2 KBY . . . E 5 10.244 -6.273 -22.431 1 97.75 ? S2 KBY 1403 A 1 HETATM 26 N N2 KBY . . . E 5 14.547 -5.289 -20.898 1 100.25 ? N2 KBY 1403 A 1 HETATM 27 C C18 KBY . . . E 5 14.983 -3.891 -20.796 1 98.55 ? C18 KBY 1403 A 1 HETATM 28 C C20 KBY . . . E 5 15.504 -3.441 -22.159 1 91.72 ? C20 KBY 1403 A 1 HETATM 29 C C21 KBY . . . E 5 16.047 -3.808 -19.711 1 97.04 ? C21 KBY 1403 A 1 HETATM 30 C C22 KBY . . . E 5 14.315 -3.262 -23.149 1 81.56 ? C22 KBY 1403 A 1 HETATM 31 C C23 KBY . . . E 5 14.025 -4.25 -24.083 1 80.06 ? C23 KBY 1403 A 1 HETATM 32 C C24 KBY . . . E 5 12.955 -4.084 -24.965 1 85.85 ? C24 KBY 1403 A 1 HETATM 33 C C25 KBY . . . E 5 12.178 -2.929 -24.909 1 91.33 ? C25 KBY 1403 A 1 HETATM 34 C C26 KBY . . . E 5 12.468 -1.943 -23.971 1 88.73 ? C26 KBY 1403 A 1 HETATM 35 C C27 KBY . . . E 5 13.534 -2.108 -23.091 1 82.67 ? C27 KBY 1403 A 1 HETATM 36 C C28 KBY . . . E 5 10.987 -2.744 -25.888 1 91.52 ? C28 KBY 1403 A 1 HETATM 37 C C29 KBY . . . E 5 11.34 -3.353 -27.247 1 92.63 ? C29 KBY 1403 A 1 HETATM 38 C C30 KBY . . . E 5 10.687 -1.252 -26.057 1 87.43 ? C30 KBY 1403 A 1 HETATM 39 C C31 KBY . . . E 5 9.75 -3.448 -25.319 1 84.76 ? C31 KBY 1403 A 1 HETATM 40 C C32 KBY . . . E 5 15.55 -3.906 -18.255 1 102.72 ? C32 KBY 1403 A 1 HETATM 41 O O5 KBY . . . E 5 14.924 -3.017 -17.793 1 102.91 ? O5 KBY 1403 A 1 HETATM 42 N N3 KBY . . . E 5 15.846 -5.079 -17.431 1 109.24 ? N3 KBY 1403 A 1 HETATM 43 C C33 KBY . . . E 5 16.613 -6.201 -17.956 1 104.54 ? C33 KBY 1403 A 1 HETATM 44 C C34 KBY . . . E 5 16.648 -7.338 -16.928 1 108.93 ? C34 KBY 1403 A 1 HETATM 45 O O6 KBY . . . E 5 17.364 -8.355 -17.132 1 105.34 ? O6 KBY 1403 A 1 HETATM 46 O O7 KBY . . . E 5 15.962 -7.254 -15.874 1 106.73 -1 O7 KBY 1403 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 46 #