data_6N4I # _model_server_result.job_id FrXGqdF0OnLVn661nbr23Q _model_server_result.datetime_utc '2024-11-30 21:26:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n4i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1001}' # _entry.id 6N4I # _exptl.entry_id 6N4I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 717.996 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124 _cell.angle_gamma 90 _cell.entry_id 6N4I _cell.length_a 221.22 _cell.length_b 123.53 _cell.length_c 123.99 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N4I _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 2 E CYS 2 1_555 E SG CYS 16 E CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 E SG CYS 9 E CYS 9 1_555 E SG CYS 21 E CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 E SG CYS 15 E CYS 15 1_555 E SG CYS 25 E CYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 F SG CYS 2 F CYS 2 1_555 F SG CYS 16 F CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 F SG CYS 9 F CYS 9 1_555 F SG CYS 21 F CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 F SG CYS 15 F CYS 15 1_555 F SG CYS 25 F CYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 G SG CYS 2 G CYS 2 1_555 G SG CYS 16 G CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf8 G SG CYS 9 G CYS 9 1_555 G SG CYS 21 G CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 G SG CYS 15 G CYS 15 1_555 G SG CYS 25 G CYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 H SG CYS 2 H CYS 2 1_555 H SG CYS 16 H CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf11 H SG CYS 9 H CYS 9 1_555 H SG CYS 21 H CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 H SG CYS 15 H CYS 15 1_555 H SG CYS 25 H CYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C39 H76 N O8 P' _chem_comp.formula_weight 717.996 _chem_comp.id 6OU _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C47 6OU sing 1 n n C48 C49 6OU sing 2 n n C47 C46 6OU sing 3 n n C41 C40 6OU doub 4 z n C41 C42 6OU sing 5 n n C40 C39 6OU sing 6 n n C27 C28 6OU sing 7 n n C27 O26 6OU sing 8 n n C28 N29 6OU sing 9 n n C01 C02 6OU sing 10 n n C42 C43 6OU sing 11 n n C02 C03 6OU sing 12 n n C45 C46 6OU sing 13 n n C45 C44 6OU sing 14 n n C39 C38 6OU sing 15 n n C33 C34 6OU sing 16 n n C33 C31 6OU sing 17 n n C44 C43 6OU sing 18 n n O26 P23 6OU sing 19 n n O24 P23 6OU doub 20 n n C35 C34 6OU sing 21 n n C35 C36 6OU sing 22 n n C38 C37 6OU sing 23 n n C36 C37 6OU sing 24 n n C31 O30 6OU sing 25 n n C31 O32 6OU doub 26 n n O22 P23 6OU sing 27 n n O22 C21 6OU sing 28 n n O30 C20 6OU sing 29 n n P23 O25 6OU sing 30 n n C03 C04 6OU sing 31 n n C04 C05 6OU sing 32 n n C19 C20 6OU sing 33 n n C19 O18 6OU sing 34 n n C21 C20 6OU sing 35 n n C15 C14 6OU sing 36 n n C15 C16 6OU sing 37 n n O18 C16 6OU sing 38 n n C14 C13 6OU sing 39 n n C05 C06 6OU sing 40 n n C16 O17 6OU doub 41 n n C06 C07 6OU sing 42 n n C11 C10 6OU sing 43 n n C11 C12 6OU sing 44 n n C13 C12 6OU sing 45 n n C10 C09 6OU sing 46 n n C07 C08 6OU sing 47 n n C09 C08 6OU sing 48 n n C01 H1 6OU sing 49 n n C01 H2 6OU sing 50 n n C01 H3 6OU sing 51 n n C02 H4 6OU sing 52 n n C02 H5 6OU sing 53 n n C03 H6 6OU sing 54 n n C03 H7 6OU sing 55 n n C04 H8 6OU sing 56 n n C04 H9 6OU sing 57 n n C05 H10 6OU sing 58 n n C05 H11 6OU sing 59 n n C06 H12 6OU sing 60 n n C06 H13 6OU sing 61 n n C07 H14 6OU sing 62 n n C07 H15 6OU sing 63 n n C08 H16 6OU sing 64 n n C08 H17 6OU sing 65 n n C09 H18 6OU sing 66 n n C09 H19 6OU sing 67 n n C10 H20 6OU sing 68 n n C10 H21 6OU sing 69 n n C11 H22 6OU sing 70 n n C11 H23 6OU sing 71 n n C12 H24 6OU sing 72 n n C12 H25 6OU sing 73 n n C13 H26 6OU sing 74 n n C13 H27 6OU sing 75 n n C14 H28 6OU sing 76 n n C14 H29 6OU sing 77 n n C15 H30 6OU sing 78 n n C15 H31 6OU sing 79 n n C19 H32 6OU sing 80 n n C19 H33 6OU sing 81 n n C20 H34 6OU sing 82 n n C21 H35 6OU sing 83 n n C21 H36 6OU sing 84 n n O25 H37 6OU sing 85 n n C27 H38 6OU sing 86 n n C27 H39 6OU sing 87 n n C28 H40 6OU sing 88 n n C28 H41 6OU sing 89 n n N29 H42 6OU sing 90 n n N29 H43 6OU sing 91 n n C33 H45 6OU sing 92 n n C33 H46 6OU sing 93 n n C34 H47 6OU sing 94 n n C34 H48 6OU sing 95 n n C35 H49 6OU sing 96 n n C35 H50 6OU sing 97 n n C36 H51 6OU sing 98 n n C36 H52 6OU sing 99 n n C37 H53 6OU sing 100 n n C37 H54 6OU sing 101 n n C38 H55 6OU sing 102 n n C38 H56 6OU sing 103 n n C39 H57 6OU sing 104 n n C39 H58 6OU sing 105 n n C40 H59 6OU sing 106 n n C41 H60 6OU sing 107 n n C42 H61 6OU sing 108 n n C42 H62 6OU sing 109 n n C43 H63 6OU sing 110 n n C43 H64 6OU sing 111 n n C44 H65 6OU sing 112 n n C44 H66 6OU sing 113 n n C45 H67 6OU sing 114 n n C45 H68 6OU sing 115 n n C46 H69 6OU sing 116 n n C46 H70 6OU sing 117 n n C47 H71 6OU sing 118 n n C47 H72 6OU sing 119 n n C48 H73 6OU sing 120 n n C48 H74 6OU sing 121 n n C49 H75 6OU sing 122 n n C49 H76 6OU sing 123 n n C49 H77 6OU sing 124 n n # _atom_sites.entry_id 6N4I _atom_sites.fract_transf_matrix[1][1] 0.00452 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003049 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008095 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009728 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 6OU A 1 1001 4 6OU PTE . J 3 6OU A 1 1002 7 6OU PTE . K 3 6OU A 1 1003 9 6OU PTE . L 3 6OU B 1 1001 1 6OU PTE . M 3 6OU B 1 1002 8 6OU PTE . N 3 6OU B 1 1003 10 6OU PTE . O 3 6OU C 1 1001 2 6OU PTE . P 3 6OU C 1 1002 5 6OU PTE . Q 3 6OU D 1 1001 3 6OU PTE . R 3 6OU D 1 1002 6 6OU PTE . S 3 6OU D 1 1003 11 6OU PTE . T 3 6OU D 1 1004 12 6OU PTE . U 3 6OU D 1 1005 19 6OU PTE . V 3 6OU E 1 101 20 6OU PTE . W 3 6OU F 1 101 17 6OU PTE . X 3 6OU G 1 101 18 6OU PTE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C08 6OU . . . I 3 97.253 256.111 231.579 1 92.47 ? C08 6OU 1001 A 1 HETATM 2 C C09 6OU . . . I 3 96.01 256.741 232.204 1 83.88 ? C09 6OU 1001 A 1 HETATM 3 C C10 6OU . . . I 3 94.891 256.969 231.191 1 68.53 ? C10 6OU 1001 A 1 HETATM 4 C C11 6OU . . . I 3 93.659 257.602 231.82 1 68.23 ? C11 6OU 1001 A 1 HETATM 5 C C12 6OU . . . I 3 92.482 257.616 230.853 1 60.88 ? C12 6OU 1001 A 1 HETATM 6 C C13 6OU . . . I 3 91.269 256.836 231.351 1 70.23 ? C13 6OU 1001 A 1 HETATM 7 C C14 6OU . . . I 3 90.019 257.249 230.577 1 69.78 ? C14 6OU 1001 A 1 HETATM 8 C C15 6OU . . . I 3 88.91 256.196 230.564 1 59.32 ? C15 6OU 1001 A 1 HETATM 9 C C16 6OU . . . I 3 87.57 256.815 230.165 1 62.3 ? C16 6OU 1001 A 1 HETATM 10 O O17 6OU . . . I 3 87.485 257.979 230.001 1 84.1 ? O17 6OU 1001 A 1 HETATM 11 O O18 6OU . . . I 3 86.424 256.02 230.023 1 47.31 ? O18 6OU 1001 A 1 HETATM 12 C C19 6OU . . . I 3 85.451 256.52 229.147 1 57.83 ? C19 6OU 1001 A 1 HETATM 13 C C20 6OU . . . I 3 84.342 257.267 229.911 1 71.47 ? C20 6OU 1001 A 1 HETATM 14 C C21 6OU . . . I 3 83.17 257.611 228.995 1 91.75 ? C21 6OU 1001 A 1 HETATM 15 O O22 6OU . . . I 3 81.963 257.29 229.617 1 87.04 ? O22 6OU 1001 A 1 HETATM 16 P P23 6OU . . . I 3 80.61 257.719 228.781 1 121.31 ? P23 6OU 1001 A 1 HETATM 17 O O24 6OU . . . I 3 80.482 256.744 227.45 1 69.04 ? O24 6OU 1001 A 1 HETATM 18 O O25 6OU . . . I 3 80.705 259.161 228.341 1 103.08 ? O25 6OU 1001 A 1 HETATM 19 O O26 6OU . . . I 3 79.398 257.58 229.673 1 196.86 ? O26 6OU 1001 A 1 HETATM 20 O O30 6OU . . . I 3 84.875 258.468 230.405 1 77.8 ? O30 6OU 1001 A 1 HETATM 21 C C31 6OU . . . I 3 84.128 259.168 231.372 1 90.83 ? C31 6OU 1001 A 1 HETATM 22 O O32 6OU . . . I 3 82.941 259.149 231.394 1 94.83 ? O32 6OU 1001 A 1 HETATM 23 C C33 6OU . . . I 3 84.877 259.992 232.418 1 86.84 ? C33 6OU 1001 A 1 HETATM 24 C C34 6OU . . . I 3 83.955 260.92 233.199 1 83.61 ? C34 6OU 1001 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #