data_6N4I
#
_model_server_result.job_id            j23ayKe-eh9cvhdVCgh_xQ 
_model_server_result.datetime_utc      '2024-11-28 01:36:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6n4i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1002}' 
#
_entry.id    6N4I 
#
_exptl.entry_id    6N4I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              717.996 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    16 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          124 
_cell.angle_gamma         90 
_cell.entry_id            6N4I 
_cell.length_a            221.22 
_cell.length_b            123.53 
_cell.length_c            123.99 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6N4I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 2 E CYS 2 1_555 E SG CYS 16 E CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 E SG CYS 9 E CYS 9 1_555 E SG CYS 21 E CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf3 E SG CYS 15 E CYS 15 1_555 E SG CYS 25 E CYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 F SG CYS 2 F CYS 2 1_555 F SG CYS 16 F CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf5 F SG CYS 9 F CYS 9 1_555 F SG CYS 21 F CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 F SG CYS 15 F CYS 15 1_555 F SG CYS 25 F CYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf7 G SG CYS 2 G CYS 2 1_555 G SG CYS 16 G CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf8 G SG CYS 9 G CYS 9 1_555 G SG CYS 21 G CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf9 G SG CYS 15 G CYS 15 1_555 G SG CYS 25 G CYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf10 H SG CYS 2 H CYS 2 1_555 H SG CYS 16 H CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf11 H SG CYS 9 H CYS 9 1_555 H SG CYS 21 H CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf12 H SG CYS 15 H CYS 15 1_555 H SG CYS 25 H CYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
#
_chem_comp.formula           'C39 H76 N O8 P' 
_chem_comp.formula_weight    717.996 
_chem_comp.id                6OU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C48 C47 6OU sing 1 n n 
C48 C49 6OU sing 2 n n 
C47 C46 6OU sing 3 n n 
C41 C40 6OU doub 4 z n 
C41 C42 6OU sing 5 n n 
C40 C39 6OU sing 6 n n 
C27 C28 6OU sing 7 n n 
C27 O26 6OU sing 8 n n 
C28 N29 6OU sing 9 n n 
C01 C02 6OU sing 10 n n 
C42 C43 6OU sing 11 n n 
C02 C03 6OU sing 12 n n 
C45 C46 6OU sing 13 n n 
C45 C44 6OU sing 14 n n 
C39 C38 6OU sing 15 n n 
C33 C34 6OU sing 16 n n 
C33 C31 6OU sing 17 n n 
C44 C43 6OU sing 18 n n 
O26 P23 6OU sing 19 n n 
O24 P23 6OU doub 20 n n 
C35 C34 6OU sing 21 n n 
C35 C36 6OU sing 22 n n 
C38 C37 6OU sing 23 n n 
C36 C37 6OU sing 24 n n 
C31 O30 6OU sing 25 n n 
C31 O32 6OU doub 26 n n 
O22 P23 6OU sing 27 n n 
O22 C21 6OU sing 28 n n 
O30 C20 6OU sing 29 n n 
P23 O25 6OU sing 30 n n 
C03 C04 6OU sing 31 n n 
C04 C05 6OU sing 32 n n 
C19 C20 6OU sing 33 n n 
C19 O18 6OU sing 34 n n 
C21 C20 6OU sing 35 n n 
C15 C14 6OU sing 36 n n 
C15 C16 6OU sing 37 n n 
O18 C16 6OU sing 38 n n 
C14 C13 6OU sing 39 n n 
C05 C06 6OU sing 40 n n 
C16 O17 6OU doub 41 n n 
C06 C07 6OU sing 42 n n 
C11 C10 6OU sing 43 n n 
C11 C12 6OU sing 44 n n 
C13 C12 6OU sing 45 n n 
C10 C09 6OU sing 46 n n 
C07 C08 6OU sing 47 n n 
C09 C08 6OU sing 48 n n 
C01 H1 6OU sing 49 n n 
C01 H2 6OU sing 50 n n 
C01 H3 6OU sing 51 n n 
C02 H4 6OU sing 52 n n 
C02 H5 6OU sing 53 n n 
C03 H6 6OU sing 54 n n 
C03 H7 6OU sing 55 n n 
C04 H8 6OU sing 56 n n 
C04 H9 6OU sing 57 n n 
C05 H10 6OU sing 58 n n 
C05 H11 6OU sing 59 n n 
C06 H12 6OU sing 60 n n 
C06 H13 6OU sing 61 n n 
C07 H14 6OU sing 62 n n 
C07 H15 6OU sing 63 n n 
C08 H16 6OU sing 64 n n 
C08 H17 6OU sing 65 n n 
C09 H18 6OU sing 66 n n 
C09 H19 6OU sing 67 n n 
C10 H20 6OU sing 68 n n 
C10 H21 6OU sing 69 n n 
C11 H22 6OU sing 70 n n 
C11 H23 6OU sing 71 n n 
C12 H24 6OU sing 72 n n 
C12 H25 6OU sing 73 n n 
C13 H26 6OU sing 74 n n 
C13 H27 6OU sing 75 n n 
C14 H28 6OU sing 76 n n 
C14 H29 6OU sing 77 n n 
C15 H30 6OU sing 78 n n 
C15 H31 6OU sing 79 n n 
C19 H32 6OU sing 80 n n 
C19 H33 6OU sing 81 n n 
C20 H34 6OU sing 82 n n 
C21 H35 6OU sing 83 n n 
C21 H36 6OU sing 84 n n 
O25 H37 6OU sing 85 n n 
C27 H38 6OU sing 86 n n 
C27 H39 6OU sing 87 n n 
C28 H40 6OU sing 88 n n 
C28 H41 6OU sing 89 n n 
N29 H42 6OU sing 90 n n 
N29 H43 6OU sing 91 n n 
C33 H45 6OU sing 92 n n 
C33 H46 6OU sing 93 n n 
C34 H47 6OU sing 94 n n 
C34 H48 6OU sing 95 n n 
C35 H49 6OU sing 96 n n 
C35 H50 6OU sing 97 n n 
C36 H51 6OU sing 98 n n 
C36 H52 6OU sing 99 n n 
C37 H53 6OU sing 100 n n 
C37 H54 6OU sing 101 n n 
C38 H55 6OU sing 102 n n 
C38 H56 6OU sing 103 n n 
C39 H57 6OU sing 104 n n 
C39 H58 6OU sing 105 n n 
C40 H59 6OU sing 106 n n 
C41 H60 6OU sing 107 n n 
C42 H61 6OU sing 108 n n 
C42 H62 6OU sing 109 n n 
C43 H63 6OU sing 110 n n 
C43 H64 6OU sing 111 n n 
C44 H65 6OU sing 112 n n 
C44 H66 6OU sing 113 n n 
C45 H67 6OU sing 114 n n 
C45 H68 6OU sing 115 n n 
C46 H69 6OU sing 116 n n 
C46 H70 6OU sing 117 n n 
C47 H71 6OU sing 118 n n 
C47 H72 6OU sing 119 n n 
C48 H73 6OU sing 120 n n 
C48 H74 6OU sing 121 n n 
C49 H75 6OU sing 122 n n 
C49 H76 6OU sing 123 n n 
C49 H77 6OU sing 124 n n 
#
_atom_sites.entry_id                     6N4I 
_atom_sites.fract_transf_matrix[1][1]    0.00452 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003049 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008095 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009728 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 6OU A 1 1001 4 6OU PTE . 
J 3 6OU A 1 1002 7 6OU PTE . 
K 3 6OU A 1 1003 9 6OU PTE . 
L 3 6OU B 1 1001 1 6OU PTE . 
M 3 6OU B 1 1002 8 6OU PTE . 
N 3 6OU B 1 1003 10 6OU PTE . 
O 3 6OU C 1 1001 2 6OU PTE . 
P 3 6OU C 1 1002 5 6OU PTE . 
Q 3 6OU D 1 1001 3 6OU PTE . 
R 3 6OU D 1 1002 6 6OU PTE . 
S 3 6OU D 1 1003 11 6OU PTE . 
T 3 6OU D 1 1004 12 6OU PTE . 
U 3 6OU D 1 1005 19 6OU PTE . 
V 3 6OU E 1 101 20 6OU PTE . 
W 3 6OU F 1 101 17 6OU PTE . 
X 3 6OU G 1 101 18 6OU PTE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 6OU . . . M 3 80.484 269.271 238.138 1 68.37 ? C13 6OU 1002 B 1 
HETATM 2 C C14 6OU . . . M 3 80.349 268.282 236.986 1 81.31 ? C14 6OU 1002 B 1 
HETATM 3 C C15 6OU . . . M 3 81.163 267.006 237.199 1 114.21 ? C15 6OU 1002 B 1 
HETATM 4 C C16 6OU . . . M 3 81.649 266.445 235.87 1 136.76 ? C16 6OU 1002 B 1 
HETATM 5 O O17 6OU . . . M 3 82.775 266.102 235.762 1 145.12 ? O17 6OU 1002 B 1 
HETATM 6 O O18 6OU . . . M 3 80.751 266.337 234.795 1 147.82 ? O18 6OU 1002 B 1 
HETATM 7 C C19 6OU . . . M 3 81.309 266.133 233.523 1 153.85 ? C19 6OU 1002 B 1 
HETATM 8 C C20 6OU . . . M 3 80.209 265.611 232.574 1 144.83 ? C20 6OU 1002 B 1 
HETATM 9 C C21 6OU . . . M 3 78.92 266.451 232.638 1 129.08 ? C21 6OU 1002 B 1 
HETATM 10 O O22 6OU . . . M 3 78.376 266.652 231.361 1 113.92 ? O22 6OU 1002 B 1 
HETATM 11 P P23 6OU . . . M 3 76.927 267.453 231.265 1 125.2 ? P23 6OU 1002 B 1 
HETATM 12 O O24 6OU . . . M 3 76.115 267.194 232.513 1 150.11 ? O24 6OU 1002 B 1 
HETATM 13 O O25 6OU . . . M 3 77.232 268.934 231.17 1 177.23 ? O25 6OU 1002 B 1 
HETATM 14 O O26 6OU . . . M 3 76.037 266.966 229.949 1 105.95 ? O26 6OU 1002 B 1 
HETATM 15 C C27 6OU . . . M 3 74.633 266.89 230.025 1 97.1 ? C27 6OU 1002 B 1 
HETATM 16 C C28 6OU . . . M 3 74.087 268.238 230.502 1 89.27 ? C28 6OU 1002 B 1 
HETATM 17 N N29 6OU . . . M 3 72.698 268.136 230.921 1 82.71 ? N29 6OU 1002 B 1 
HETATM 18 O O30 6OU . . . M 3 79.866 264.271 232.854 1 146.73 ? O30 6OU 1002 B 1 
HETATM 19 C C31 6OU . . . M 3 80.427 263.636 233.979 1 109.39 ? C31 6OU 1002 B 1 
HETATM 20 O O32 6OU . . . M 3 81.404 262.971 233.842 1 83.54 ? O32 6OU 1002 B 1 
HETATM 21 C C33 6OU . . . M 3 79.796 263.787 235.372 1 100.08 ? C33 6OU 1002 B 1 
HETATM 22 C C34 6OU . . . M 3 78.404 264.437 235.398 1 90.56 ? C34 6OU 1002 B 1 
HETATM 23 C C35 6OU . . . M 3 78.241 265.521 236.475 1 70.88 ? C35 6OU 1002 B 1 
HETATM 24 C C36 6OU . . . M 3 77.033 266.434 236.233 1 52.99 ? C36 6OU 1002 B 1 
HETATM 25 C C37 6OU . . . M 3 75.939 265.751 235.408 1 64.93 ? C37 6OU 1002 B 1 
HETATM 26 C C38 6OU . . . M 3 74.581 265.733 236.111 1 87.97 ? C38 6OU 1002 B 1 
HETATM 27 C C39 6OU . . . M 3 73.418 266.005 235.153 1 91.89 ? C39 6OU 1002 B 1 
#
_model_server_stats.io_time_ms              81 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#