data_6N4L # _model_server_result.job_id W5IGu3aGv2kXTIvg8zlrgA _model_server_result.datetime_utc '2024-11-17 10:45:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n4l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6N4L # _exptl.entry_id 6N4L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6N4L _cell.length_a 45.587 _cell.length_b 74.63 _cell.length_c 75.398 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N4L _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OD1 ASP 278 A ASP 278 1_555 A CA GLY 283 A GLY 283 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.534 ? metalc ? metalc1 A OG SER 16 A SER 16 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc2 A SG CYS 97 A CYS 97 1_555 D FE1 SF4 . A SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc3 A SG CYS 132 A CYS 132 1_555 D FE2 SF4 . A SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc4 B O3B ADP . A ADP 301 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc5 C MG MG . A MG 302 1_555 E O HOH . A HOH 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc6 C MG MG . A MG 302 1_555 E O HOH . A HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc7 C MG MG . A MG 302 1_555 E O HOH . A HOH 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc8 C MG MG . A MG 302 1_555 E O HOH . A HOH 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 334 n n FE1 S3 SF4 sing 335 n n FE1 S4 SF4 sing 336 n n FE2 S1 SF4 sing 337 n n FE2 S3 SF4 sing 338 n n FE2 S4 SF4 sing 339 n n FE3 S1 SF4 sing 340 n n FE3 S2 SF4 sing 341 n n FE3 S4 SF4 sing 342 n n FE4 S1 SF4 sing 343 n n FE4 S2 SF4 sing 344 n n FE4 S3 SF4 sing 345 n n # _atom_sites.entry_id 6N4L _atom_sites.fract_transf_matrix[1][1] 0.021936 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013399 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013263 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 301 1 ADP ADP . C 3 MG A 1 302 1 MG MG . D 4 SF4 A 1 303 2 SF4 FES . E 5 HOH A 1 401 199 HOH HOH . E 5 HOH A 2 402 248 HOH HOH . E 5 HOH A 3 403 238 HOH HOH . E 5 HOH A 4 404 222 HOH HOH . E 5 HOH A 5 405 137 HOH HOH . E 5 HOH A 6 406 136 HOH HOH . E 5 HOH A 7 407 247 HOH HOH . E 5 HOH A 8 408 154 HOH HOH . E 5 HOH A 9 409 230 HOH HOH . E 5 HOH A 10 410 83 HOH HOH . E 5 HOH A 11 411 151 HOH HOH . E 5 HOH A 12 412 176 HOH HOH . E 5 HOH A 13 413 127 HOH HOH . E 5 HOH A 14 414 223 HOH HOH . E 5 HOH A 15 415 249 HOH HOH . E 5 HOH A 16 416 224 HOH HOH . E 5 HOH A 17 417 81 HOH HOH . E 5 HOH A 18 418 200 HOH HOH . E 5 HOH A 19 419 128 HOH HOH . E 5 HOH A 20 420 264 HOH HOH . E 5 HOH A 21 421 162 HOH HOH . E 5 HOH A 22 422 103 HOH HOH . E 5 HOH A 23 423 119 HOH HOH . E 5 HOH A 24 424 72 HOH HOH . E 5 HOH A 25 425 219 HOH HOH . E 5 HOH A 26 426 268 HOH HOH . E 5 HOH A 27 427 177 HOH HOH . E 5 HOH A 28 428 173 HOH HOH . E 5 HOH A 29 429 75 HOH HOH . E 5 HOH A 30 430 217 HOH HOH . E 5 HOH A 31 431 179 HOH HOH . E 5 HOH A 32 432 187 HOH HOH . E 5 HOH A 33 433 2 HOH HOH . E 5 HOH A 34 434 40 HOH HOH . E 5 HOH A 35 435 6 HOH HOH . E 5 HOH A 36 436 22 HOH HOH . E 5 HOH A 37 437 259 HOH HOH . E 5 HOH A 38 438 172 HOH HOH . E 5 HOH A 39 439 209 HOH HOH . E 5 HOH A 40 440 20 HOH HOH . E 5 HOH A 41 441 43 HOH HOH . E 5 HOH A 42 442 13 HOH HOH . E 5 HOH A 43 443 100 HOH HOH . E 5 HOH A 44 444 206 HOH HOH . E 5 HOH A 45 445 197 HOH HOH . E 5 HOH A 46 446 246 HOH HOH . E 5 HOH A 47 447 125 HOH HOH . E 5 HOH A 48 448 44 HOH HOH . E 5 HOH A 49 449 79 HOH HOH . E 5 HOH A 50 450 68 HOH HOH . E 5 HOH A 51 451 140 HOH HOH . E 5 HOH A 52 452 14 HOH HOH . E 5 HOH A 53 453 3 HOH HOH . E 5 HOH A 54 454 53 HOH HOH . E 5 HOH A 55 455 88 HOH HOH . E 5 HOH A 56 456 250 HOH HOH . E 5 HOH A 57 457 70 HOH HOH . E 5 HOH A 58 458 45 HOH HOH . E 5 HOH A 59 459 93 HOH HOH . E 5 HOH A 60 460 87 HOH HOH . E 5 HOH A 61 461 38 HOH HOH . E 5 HOH A 62 462 201 HOH HOH . E 5 HOH A 63 463 101 HOH HOH . E 5 HOH A 64 464 76 HOH HOH . E 5 HOH A 65 465 205 HOH HOH . E 5 HOH A 66 466 145 HOH HOH . E 5 HOH A 67 467 146 HOH HOH . E 5 HOH A 68 468 57 HOH HOH . E 5 HOH A 69 469 233 HOH HOH . E 5 HOH A 70 470 108 HOH HOH . E 5 HOH A 71 471 28 HOH HOH . E 5 HOH A 72 472 263 HOH HOH . E 5 HOH A 73 473 11 HOH HOH . E 5 HOH A 74 474 92 HOH HOH . E 5 HOH A 75 475 212 HOH HOH . E 5 HOH A 76 476 143 HOH HOH . E 5 HOH A 77 477 21 HOH HOH . E 5 HOH A 78 478 231 HOH HOH . E 5 HOH A 79 479 19 HOH HOH . E 5 HOH A 80 480 17 HOH HOH . E 5 HOH A 81 481 262 HOH HOH . E 5 HOH A 82 482 24 HOH HOH . E 5 HOH A 83 483 167 HOH HOH . E 5 HOH A 84 484 15 HOH HOH . E 5 HOH A 85 485 189 HOH HOH . E 5 HOH A 86 486 25 HOH HOH . E 5 HOH A 87 487 65 HOH HOH . E 5 HOH A 88 488 34 HOH HOH . E 5 HOH A 89 489 181 HOH HOH . E 5 HOH A 90 490 18 HOH HOH . E 5 HOH A 91 491 208 HOH HOH . E 5 HOH A 92 492 220 HOH HOH . E 5 HOH A 93 493 102 HOH HOH . E 5 HOH A 94 494 9 HOH HOH . E 5 HOH A 95 495 41 HOH HOH . E 5 HOH A 96 496 95 HOH HOH . E 5 HOH A 97 497 80 HOH HOH . E 5 HOH A 98 498 114 HOH HOH . E 5 HOH A 99 499 7 HOH HOH . E 5 HOH A 100 500 239 HOH HOH . E 5 HOH A 101 501 60 HOH HOH . E 5 HOH A 102 502 64 HOH HOH . E 5 HOH A 103 503 82 HOH HOH . E 5 HOH A 104 504 160 HOH HOH . E 5 HOH A 105 505 178 HOH HOH . E 5 HOH A 106 506 265 HOH HOH . E 5 HOH A 107 507 110 HOH HOH . E 5 HOH A 108 508 55 HOH HOH . E 5 HOH A 109 509 4 HOH HOH . E 5 HOH A 110 510 29 HOH HOH . E 5 HOH A 111 511 243 HOH HOH . E 5 HOH A 112 512 121 HOH HOH . E 5 HOH A 113 513 54 HOH HOH . E 5 HOH A 114 514 10 HOH HOH . E 5 HOH A 115 515 107 HOH HOH . E 5 HOH A 116 516 26 HOH HOH . E 5 HOH A 117 517 185 HOH HOH . E 5 HOH A 118 518 182 HOH HOH . E 5 HOH A 119 519 191 HOH HOH . E 5 HOH A 120 520 126 HOH HOH . E 5 HOH A 121 521 52 HOH HOH . E 5 HOH A 122 522 30 HOH HOH . E 5 HOH A 123 523 138 HOH HOH . E 5 HOH A 124 524 214 HOH HOH . E 5 HOH A 125 525 1 HOH HOH . E 5 HOH A 126 526 159 HOH HOH . E 5 HOH A 127 527 49 HOH HOH . E 5 HOH A 128 528 267 HOH HOH . E 5 HOH A 129 529 5 HOH HOH . E 5 HOH A 130 530 69 HOH HOH . E 5 HOH A 131 531 58 HOH HOH . E 5 HOH A 132 532 244 HOH HOH . E 5 HOH A 133 533 149 HOH HOH . E 5 HOH A 134 534 67 HOH HOH . E 5 HOH A 135 535 142 HOH HOH . E 5 HOH A 136 536 77 HOH HOH . E 5 HOH A 137 537 155 HOH HOH . E 5 HOH A 138 538 242 HOH HOH . E 5 HOH A 139 539 228 HOH HOH . E 5 HOH A 140 540 56 HOH HOH . E 5 HOH A 141 541 31 HOH HOH . E 5 HOH A 142 542 120 HOH HOH . E 5 HOH A 143 543 96 HOH HOH . E 5 HOH A 144 544 183 HOH HOH . E 5 HOH A 145 545 8 HOH HOH . E 5 HOH A 146 546 117 HOH HOH . E 5 HOH A 147 547 184 HOH HOH . E 5 HOH A 148 548 50 HOH HOH . E 5 HOH A 149 549 252 HOH HOH . E 5 HOH A 150 550 180 HOH HOH . E 5 HOH A 151 551 141 HOH HOH . E 5 HOH A 152 552 89 HOH HOH . E 5 HOH A 153 553 37 HOH HOH . E 5 HOH A 154 554 48 HOH HOH . E 5 HOH A 155 555 144 HOH HOH . E 5 HOH A 156 556 170 HOH HOH . E 5 HOH A 157 557 147 HOH HOH . E 5 HOH A 158 558 35 HOH HOH . E 5 HOH A 159 559 16 HOH HOH . E 5 HOH A 160 560 210 HOH HOH . E 5 HOH A 161 561 36 HOH HOH . E 5 HOH A 162 562 51 HOH HOH . E 5 HOH A 163 564 175 HOH HOH . E 5 HOH A 164 565 39 HOH HOH . E 5 HOH A 165 566 204 HOH HOH . E 5 HOH A 166 567 23 HOH HOH . E 5 HOH A 167 568 91 HOH HOH . E 5 HOH A 168 569 66 HOH HOH . E 5 HOH A 169 570 211 HOH HOH . E 5 HOH A 170 571 33 HOH HOH . E 5 HOH A 171 572 226 HOH HOH . E 5 HOH A 172 573 42 HOH HOH . E 5 HOH A 173 574 62 HOH HOH . E 5 HOH A 174 575 215 HOH HOH . E 5 HOH A 175 576 266 HOH HOH . E 5 HOH A 176 577 84 HOH HOH . E 5 HOH A 177 578 188 HOH HOH . E 5 HOH A 178 579 195 HOH HOH . E 5 HOH A 179 580 169 HOH HOH . E 5 HOH A 180 581 32 HOH HOH . E 5 HOH A 181 582 61 HOH HOH . E 5 HOH A 182 583 47 HOH HOH . E 5 HOH A 183 584 229 HOH HOH . E 5 HOH A 184 585 106 HOH HOH . E 5 HOH A 185 586 115 HOH HOH . E 5 HOH A 186 587 111 HOH HOH . E 5 HOH A 187 588 171 HOH HOH . E 5 HOH A 188 589 86 HOH HOH . E 5 HOH A 189 590 12 HOH HOH . E 5 HOH A 190 591 152 HOH HOH . E 5 HOH A 191 592 46 HOH HOH . E 5 HOH A 192 593 174 HOH HOH . E 5 HOH A 193 594 98 HOH HOH . E 5 HOH A 194 595 78 HOH HOH . E 5 HOH A 195 596 166 HOH HOH . E 5 HOH A 196 597 153 HOH HOH . E 5 HOH A 197 598 63 HOH HOH . E 5 HOH A 198 599 225 HOH HOH . E 5 HOH A 199 600 198 HOH HOH . E 5 HOH A 200 601 157 HOH HOH . E 5 HOH A 201 602 190 HOH HOH . E 5 HOH A 202 603 164 HOH HOH . E 5 HOH A 203 604 258 HOH HOH . E 5 HOH A 204 605 168 HOH HOH . E 5 HOH A 205 606 123 HOH HOH . E 5 HOH A 206 607 99 HOH HOH . E 5 HOH A 207 608 150 HOH HOH . E 5 HOH A 208 609 216 HOH HOH . E 5 HOH A 209 610 104 HOH HOH . E 5 HOH A 210 611 218 HOH HOH . E 5 HOH A 211 612 196 HOH HOH . E 5 HOH A 212 613 163 HOH HOH . E 5 HOH A 213 614 251 HOH HOH . E 5 HOH A 214 615 97 HOH HOH . E 5 HOH A 215 616 240 HOH HOH . E 5 HOH A 216 617 158 HOH HOH . E 5 HOH A 217 618 148 HOH HOH . E 5 HOH A 218 619 186 HOH HOH . E 5 HOH A 219 620 232 HOH HOH . E 5 HOH A 220 621 135 HOH HOH . E 5 HOH A 221 622 213 HOH HOH . E 5 HOH A 222 623 132 HOH HOH . E 5 HOH A 223 624 192 HOH HOH . E 5 HOH A 224 625 194 HOH HOH . E 5 HOH A 225 626 241 HOH HOH . E 5 HOH A 226 627 122 HOH HOH . E 5 HOH A 227 628 133 HOH HOH . E 5 HOH A 228 629 165 HOH HOH . E 5 HOH A 229 630 130 HOH HOH . E 5 HOH A 230 631 245 HOH HOH . E 5 HOH A 231 632 124 HOH HOH . E 5 HOH A 232 633 207 HOH HOH . E 5 HOH A 233 634 275 HOH HOH . E 5 HOH A 234 635 274 HOH HOH . E 5 HOH A 235 636 261 HOH HOH . E 5 HOH A 236 637 236 HOH HOH . E 5 HOH A 237 638 161 HOH HOH . E 5 HOH A 238 639 139 HOH HOH . E 5 HOH A 239 640 256 HOH HOH . E 5 HOH A 240 641 253 HOH HOH . E 5 HOH A 241 642 27 HOH HOH . E 5 HOH A 242 643 156 HOH HOH . E 5 HOH A 243 644 118 HOH HOH . E 5 HOH A 244 645 269 HOH HOH . E 5 HOH A 245 646 272 HOH HOH . E 5 HOH A 246 647 94 HOH HOH . E 5 HOH A 247 648 271 HOH HOH . E 5 HOH A 248 649 90 HOH HOH . E 5 HOH A 249 650 134 HOH HOH . E 5 HOH A 250 651 74 HOH HOH . E 5 HOH A 251 652 270 HOH HOH . E 5 HOH A 252 653 257 HOH HOH . E 5 HOH A 253 654 85 HOH HOH . E 5 HOH A 254 655 116 HOH HOH . E 5 HOH A 255 656 129 HOH HOH . E 5 HOH A 256 657 237 HOH HOH . E 5 HOH A 257 658 276 HOH HOH . E 5 HOH A 258 659 73 HOH HOH . E 5 HOH A 259 660 113 HOH HOH . E 5 HOH A 260 661 109 HOH HOH . E 5 HOH A 261 662 235 HOH HOH . E 5 HOH A 262 663 221 HOH HOH . E 5 HOH A 263 664 131 HOH HOH . E 5 HOH A 264 665 234 HOH HOH . E 5 HOH A 265 666 193 HOH HOH . E 5 HOH A 266 667 273 HOH HOH . E 5 HOH A 267 668 254 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . D 4 13.204 0.474 1.294 1 12.2 ? FE1 SF4 303 A 1 HETATM 2 FE FE2 SF4 . . . D 4 11.392 -1.329 0.411 1 12.2 ? FE2 SF4 303 A 1 HETATM 3 S S3 SF4 . . . D 4 13.651 -1.63 0.637 1 12.49 ? S3 SF4 303 A 1 HETATM 4 S S4 SF4 . . . D 4 10.932 0.461 1.716 1 13.02 ? S4 SF4 303 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #