data_6N4M # _model_server_result.job_id Ne_5IvI_zRF_jKx7VIi3xA _model_server_result.datetime_utc '2024-11-17 10:44:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6n4m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6N4M # _exptl.entry_id 6N4M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6N4M _cell.length_a 45.806 _cell.length_b 74.579 _cell.length_c 75.02 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N4M _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 16 A SER 16 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc2 A SG CYS 97 A CYS 97 1_555 D FE1 SF4 . A SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc3 A SG CYS 132 A CYS 132 1_555 D FE2 SF4 . A SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc4 B O3B ADP . A ADP 301 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc5 C MG MG . A MG 302 1_555 E O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc6 C MG MG . A MG 302 1_555 E O HOH . A HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc7 C MG MG . A MG 302 1_555 E O HOH . A HOH 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc8 C MG MG . A MG 302 1_555 E O HOH . A HOH 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 334 n n FE1 S3 SF4 sing 335 n n FE1 S4 SF4 sing 336 n n FE2 S1 SF4 sing 337 n n FE2 S3 SF4 sing 338 n n FE2 S4 SF4 sing 339 n n FE3 S1 SF4 sing 340 n n FE3 S2 SF4 sing 341 n n FE3 S4 SF4 sing 342 n n FE4 S1 SF4 sing 343 n n FE4 S2 SF4 sing 344 n n FE4 S3 SF4 sing 345 n n # _atom_sites.entry_id 6N4M _atom_sites.fract_transf_matrix[1][1] 0.021831 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013409 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01333 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 301 1 ADP ADP . C 3 MG A 1 302 1 MG MG . D 4 SF4 A 1 303 2 SF4 FES . E 5 HOH A 1 401 93 HOH HOH . E 5 HOH A 2 402 63 HOH HOH . E 5 HOH A 3 403 85 HOH HOH . E 5 HOH A 4 404 78 HOH HOH . E 5 HOH A 5 405 19 HOH HOH . E 5 HOH A 6 406 95 HOH HOH . E 5 HOH A 7 407 55 HOH HOH . E 5 HOH A 8 408 45 HOH HOH . E 5 HOH A 9 409 105 HOH HOH . E 5 HOH A 10 410 49 HOH HOH . E 5 HOH A 11 411 13 HOH HOH . E 5 HOH A 12 412 70 HOH HOH . E 5 HOH A 13 413 87 HOH HOH . E 5 HOH A 14 414 103 HOH HOH . E 5 HOH A 15 415 39 HOH HOH . E 5 HOH A 16 416 15 HOH HOH . E 5 HOH A 17 417 29 HOH HOH . E 5 HOH A 18 418 27 HOH HOH . E 5 HOH A 19 419 3 HOH HOH . E 5 HOH A 20 420 40 HOH HOH . E 5 HOH A 21 421 75 HOH HOH . E 5 HOH A 22 422 1 HOH HOH . E 5 HOH A 23 423 99 HOH HOH . E 5 HOH A 24 424 30 HOH HOH . E 5 HOH A 25 425 22 HOH HOH . E 5 HOH A 26 426 2 HOH HOH . E 5 HOH A 27 427 4 HOH HOH . E 5 HOH A 28 428 88 HOH HOH . E 5 HOH A 29 429 118 HOH HOH . E 5 HOH A 30 430 56 HOH HOH . E 5 HOH A 31 431 14 HOH HOH . E 5 HOH A 32 432 51 HOH HOH . E 5 HOH A 33 433 34 HOH HOH . E 5 HOH A 34 434 48 HOH HOH . E 5 HOH A 35 435 26 HOH HOH . E 5 HOH A 36 436 77 HOH HOH . E 5 HOH A 37 437 74 HOH HOH . E 5 HOH A 38 438 18 HOH HOH . E 5 HOH A 39 439 8 HOH HOH . E 5 HOH A 40 440 97 HOH HOH . E 5 HOH A 41 441 9 HOH HOH . E 5 HOH A 42 442 16 HOH HOH . E 5 HOH A 43 443 17 HOH HOH . E 5 HOH A 44 444 20 HOH HOH . E 5 HOH A 45 445 73 HOH HOH . E 5 HOH A 46 446 11 HOH HOH . E 5 HOH A 47 447 67 HOH HOH . E 5 HOH A 48 448 50 HOH HOH . E 5 HOH A 49 449 47 HOH HOH . E 5 HOH A 50 450 36 HOH HOH . E 5 HOH A 51 451 57 HOH HOH . E 5 HOH A 52 452 42 HOH HOH . E 5 HOH A 53 453 7 HOH HOH . E 5 HOH A 54 454 5 HOH HOH . E 5 HOH A 55 455 12 HOH HOH . E 5 HOH A 56 456 117 HOH HOH . E 5 HOH A 57 457 112 HOH HOH . E 5 HOH A 58 458 32 HOH HOH . E 5 HOH A 59 459 43 HOH HOH . E 5 HOH A 60 460 72 HOH HOH . E 5 HOH A 61 461 38 HOH HOH . E 5 HOH A 62 462 76 HOH HOH . E 5 HOH A 63 463 66 HOH HOH . E 5 HOH A 64 464 101 HOH HOH . E 5 HOH A 65 465 59 HOH HOH . E 5 HOH A 66 466 79 HOH HOH . E 5 HOH A 67 467 113 HOH HOH . E 5 HOH A 68 468 116 HOH HOH . E 5 HOH A 69 469 21 HOH HOH . E 5 HOH A 70 470 98 HOH HOH . E 5 HOH A 71 471 6 HOH HOH . E 5 HOH A 72 472 114 HOH HOH . E 5 HOH A 73 473 37 HOH HOH . E 5 HOH A 74 474 35 HOH HOH . E 5 HOH A 75 475 23 HOH HOH . E 5 HOH A 76 476 28 HOH HOH . E 5 HOH A 77 477 24 HOH HOH . E 5 HOH A 78 478 53 HOH HOH . E 5 HOH A 79 479 86 HOH HOH . E 5 HOH A 80 480 81 HOH HOH . E 5 HOH A 81 482 54 HOH HOH . E 5 HOH A 82 483 96 HOH HOH . E 5 HOH A 83 484 41 HOH HOH . E 5 HOH A 84 485 62 HOH HOH . E 5 HOH A 85 486 44 HOH HOH . E 5 HOH A 86 487 119 HOH HOH . E 5 HOH A 87 488 91 HOH HOH . E 5 HOH A 88 489 33 HOH HOH . E 5 HOH A 89 490 109 HOH HOH . E 5 HOH A 90 491 71 HOH HOH . E 5 HOH A 91 492 100 HOH HOH . E 5 HOH A 92 493 108 HOH HOH . E 5 HOH A 93 494 89 HOH HOH . E 5 HOH A 94 495 52 HOH HOH . E 5 HOH A 95 496 25 HOH HOH . E 5 HOH A 96 497 68 HOH HOH . E 5 HOH A 97 498 31 HOH HOH . E 5 HOH A 98 499 120 HOH HOH . E 5 HOH A 99 500 104 HOH HOH . E 5 HOH A 100 501 10 HOH HOH . E 5 HOH A 101 502 82 HOH HOH . E 5 HOH A 102 503 115 HOH HOH . E 5 HOH A 103 504 102 HOH HOH . E 5 HOH A 104 505 58 HOH HOH . E 5 HOH A 105 506 46 HOH HOH . E 5 HOH A 106 507 84 HOH HOH . E 5 HOH A 107 508 107 HOH HOH . E 5 HOH A 108 509 121 HOH HOH . E 5 HOH A 109 510 61 HOH HOH . E 5 HOH A 110 511 122 HOH HOH . E 5 HOH A 111 512 94 HOH HOH . E 5 HOH A 112 513 64 HOH HOH . E 5 HOH A 113 514 65 HOH HOH . E 5 HOH A 114 515 60 HOH HOH . E 5 HOH A 115 516 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . D 4 -13.037 -0.502 1.269 1 17.49 ? FE1 SF4 303 A 1 HETATM 2 FE FE2 SF4 . . . D 4 -11.238 1.315 0.433 1 17.75 ? FE2 SF4 303 A 1 HETATM 3 S S3 SF4 . . . D 4 -13.466 1.61 0.662 1 17.43 ? S3 SF4 303 A 1 HETATM 4 S S4 SF4 . . . D 4 -10.796 -0.491 1.673 1 17.95 ? S4 SF4 303 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #